RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 ACBD3Q9H3P7 528 aa9.4□□□□□ -0.9
LIMCH1-201ENST00000313860 TTLL5Q6EMB2 1281 aa9.4□□□□□ -0.9
LIMCH1-201ENST00000313860 ZMAT2Q96NC0 199 aaKnown RBP9.4□□□□□ -0.9
LIMCH1-201ENST00000313860 GBP4Q96PP9 640 aa9.4□□□□□ -0.9
LIMCH1-201ENST00000313860 GOLGA6L7A0A1B0GV03 622 aa9.39□□□□□ -0.91
LIMCH1-201ENST00000313860 NUCB2P80303 420 aa9.39□□□□□ -0.91
LIMCH1-201ENST00000313860 TMCO4Q5TGY1 634 aa9.39□□□□□ -0.91
LIMCH1-201ENST00000313860 SLKQ9H2G2 1235 aaPredicted RBP9.39□□□□□ -0.91
LIMCH1-201ENST00000313860 ARID4AP29374 1257 aaPredicted RBP9.39□□□□□ -0.91
LIMCH1-201ENST00000313860 ZWINTO95229 277 aa9.38□□□□□ -0.91
LIMCH1-201ENST00000313860 ERICH4A6NGS2 130 aa9.38□□□□□ -0.91
LIMCH1-201ENST00000313860 CCDC173Q0VFZ6 552 aa9.38□□□□□ -0.91
LIMCH1-201ENST00000313860 FOXD4L5Q5VV16 416 aaPredicted RBP9.38□□□□□ -0.91
LIMCH1-201ENST00000313860 FOXD4L4Q8WXT5 416 aaPredicted RBP9.38□□□□□ -0.91
LIMCH1-201ENST00000313860 FOXD4L1Q9NU39 408 aa9.38□□□□□ -0.91
LIMCH1-201ENST00000313860 SHTN1A0MZ66 631 aa9.38□□□□□ -0.91
LIMCH1-201ENST00000313860 HMGB1P09429 215 aaKnown RBP9.38□□□□□ -0.91
LIMCH1-201ENST00000313860 CHGAP10645 457 aaKnown RBP9.38□□□□□ -0.91
LIMCH1-201ENST00000313860 ZFYVE27Q5T4F4 411 aa9.38□□□□□ -0.91
LIMCH1-201ENST00000313860 WDR66Q8TBY9 1149 aa9.38□□□□□ -0.91
LIMCH1-201ENST00000313860 PAIP2Q9BPZ3 127 aaKnown RBP9.38□□□□□ -0.91
LIMCH1-201ENST00000313860 CHMP2AO43633 222 aa9.38□□□□□ -0.91
LIMCH1-201ENST00000313860 DDX10Q13206 875 aaKnown RBP9.38□□□□□ -0.91
LIMCH1-201ENST00000313860 PRPF31Q8WWY3 499 aaKnown RBP9.38□□□□□ -0.91
LIMCH1-201ENST00000313860 TRIM6-TRIM34B2RNG4 842 aa9.37□□□□□ -0.91
LIMCH1-201ENST00000313860 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.37□□□□□ -0.91
LIMCH1-201ENST00000313860 MCCP23508 829 aa9.37□□□□□ -0.91
LIMCH1-201ENST00000313860 ODF2Q5BJF6 829 aa9.37□□□□□ -0.91
LIMCH1-201ENST00000313860 MARCH6O60337 910 aa9.37□□□□□ -0.91
LIMCH1-201ENST00000313860 MFAP1P55081 439 aaKnown RBP9.36□□□□□ -0.91
LIMCH1-201ENST00000313860 CT47A1Q5JQC4 288 aaPredicted RBP9.36□□□□□ -0.91
LIMCH1-201ENST00000313860 BMS1Q14692 1282 aaKnown RBP9.36□□□□□ -0.91
LIMCH1-201ENST00000313860 SERPINA10Q9UK55 444 aa9.36□□□□□ -0.91
LIMCH1-201ENST00000313860 TPM2P07951 284 aa9.35□□□□□ -0.91
LIMCH1-201ENST00000313860 SEPT14Q6ZU15 432 aa9.35□□□□□ -0.91
LIMCH1-201ENST00000313860 CCDC34Q96HJ3 373 aa9.35□□□□□ -0.91
LIMCH1-201ENST00000313860 RBM10P98175 930 aaKnown RBP9.35□□□□□ -0.91
LIMCH1-201ENST00000313860 TPM1P09493 284 aa9.35□□□□□ -0.91
LIMCH1-201ENST00000313860 NOL8Q76FK4 1167 aaKnown RBP9.35□□□□□ -0.91
LIMCH1-201ENST00000313860 TAX1BP1Q86VP1 789 aa9.35□□□□□ -0.91
LIMCH1-201ENST00000313860 MIER1Q8N108 512 aa9.35□□□□□ -0.91
LIMCH1-201ENST00000313860 SEPT7Q16181 437 aaKnown RBP9.34□□□□□ -0.91
LIMCH1-201ENST00000313860 EIF3JO75822 258 aaKnown RBP9.34□□□□□ -0.91
LIMCH1-201ENST00000313860 SENP3Q9H4L4 574 aaPredicted RBP9.34□□□□□ -0.91
LIMCH1-201ENST00000313860 GIGYF2Q6Y7W6 1299 aaKnown RBP9.34□□□□□ -0.91
LIMCH1-201ENST00000313860 STAG3Q9UJ98 1225 aa9.33□□□□□ -0.92
LIMCH1-201ENST00000313860 POLD1P28340 1107 aa9.33□□□□□ -0.92
LIMCH1-201ENST00000313860 CAGE1Q8TC20 777 aa9.33□□□□□ -0.92
LIMCH1-201ENST00000313860 WHAMMQ8TF30 809 aa9.33□□□□□ -0.92
LIMCH1-201ENST00000313860 PLCD3Q8N3E9 789 aa9.33□□□□□ -0.92
LIMCH1-201ENST00000313860 FYB1O15117 783 aa9.33□□□□□ -0.92
LIMCH1-201ENST00000313860 CT47B1P0C2W7 299 aaPredicted RBP9.33□□□□□ -0.92
LIMCH1-201ENST00000313860 EZRP15311 586 aaKnown RBP9.33□□□□□ -0.92
LIMCH1-201ENST00000313860 GORABQ5T7V8 394 aa9.33□□□□□ -0.92
LIMCH1-201ENST00000313860 DAAM2Q86T65 1068 aa9.33□□□□□ -0.92
LIMCH1-201ENST00000313860 CHMP3Q9Y3E7 222 aa9.33□□□□□ -0.92
LIMCH1-201ENST00000313860 ZRANB2O95218 330 aaKnown RBP eCLIP9.32□□□□□ -0.92
LIMCH1-201ENST00000313860 TRERF1Q96PN7 1200 aa9.32□□□□□ -0.92
LIMCH1-201ENST00000313860 STK31Q9BXU1 1019 aa9.32□□□□□ -0.92
LIMCH1-201ENST00000313860 PPM1FP49593 454 aaPredicted RBP9.32□□□□□ -0.92
LIMCH1-201ENST00000313860 MRS2Q9HD23 443 aa9.32□□□□□ -0.92
LIMCH1-201ENST00000313860 PIK3R5Q8WYR1 880 aa9.32□□□□□ -0.92
LIMCH1-201ENST00000313860 PDIA4P13667 645 aaKnown RBP9.31□□□□□ -0.92
LIMCH1-201ENST00000313860 BANK1Q8NDB2 785 aa9.31□□□□□ -0.92
LIMCH1-201ENST00000313860 PPM1EQ8WY54 764 aa9.31□□□□□ -0.92
LIMCH1-201ENST00000313860 WWC3Q9ULE0 1092 aa9.31□□□□□ -0.92
LIMCH1-201ENST00000313860 IPO7O95373 1038 aaKnown RBP9.31□□□□□ -0.92
LIMCH1-201ENST00000313860 IRX3P78415 501 aaPredicted RBP9.31□□□□□ -0.92
LIMCH1-201ENST00000313860 CCDC160A6NGH7 325 aa9.31□□□□□ -0.92
LIMCH1-201ENST00000313860 CBX1P83916 185 aa9.31□□□□□ -0.92
LIMCH1-201ENST00000313860 HDAC5Q9UQL6 1122 aa9.31□□□□□ -0.92
LIMCH1-201ENST00000313860 TSPY4P0CV99 314 aa9.3□□□□□ -0.92
LIMCH1-201ENST00000313860 TSPY10P0CW01 314 aa9.3□□□□□ -0.92
LIMCH1-201ENST00000313860 FRAT1Q92837 279 aaPredicted RBP9.3□□□□□ -0.92
LIMCH1-201ENST00000313860 FBXW7Q969H0 707 aa9.3□□□□□ -0.92
LIMCH1-201ENST00000313860 R3HCC1Q9Y3T6 440 aaKnown RBP9.3□□□□□ -0.92
LIMCH1-201ENST00000313860 APBB1O00213 710 aa9.29□□□□□ -0.92
LIMCH1-201ENST00000313860 CCDC91Q7Z6B0 441 aa9.29□□□□□ -0.92
LIMCH1-201ENST00000313860 LCA5Q86VQ0 697 aa9.29□□□□□ -0.92
LIMCH1-201ENST00000313860 TIGD1Q96MW7 591 aa9.29□□□□□ -0.92
LIMCH1-201ENST00000313860 DDX11L8A8MPP1 907 aa9.29□□□□□ -0.92
LIMCH1-201ENST00000313860 U2SURPO15042 1029 aaKnown RBP9.29□□□□□ -0.92
LIMCH1-201ENST00000313860 CFAP45Q9UL16 551 aa9.29□□□□□ -0.92
LIMCH1-201ENST00000313860 KIF3CO14782 793 aa9.28□□□□□ -0.92
LIMCH1-201ENST00000313860 SETSIPP0DME0 302 aa9.28□□□□□ -0.92
LIMCH1-201ENST00000313860 FAM193AP78312 1265 aa9.28□□□□□ -0.92
LIMCH1-201ENST00000313860 DNAJC2Q99543 621 aaKnown RBP9.28□□□□□ -0.92
LIMCH1-201ENST00000313860 FOXD4L6Q3SYB3 417 aaPredicted RBP9.28□□□□□ -0.92
LIMCH1-201ENST00000313860 FOXD4L3Q6VB84 417 aaPredicted RBP9.28□□□□□ -0.92
LIMCH1-201ENST00000313860 NAP1L3Q99457 506 aaPredicted RBP9.28□□□□□ -0.92
LIMCH1-201ENST00000313860 FEZ2Q9UHY8 353 aaPredicted RBP9.28□□□□□ -0.92
LIMCH1-201ENST00000313860 BECN2A8MW95 431 aa9.28□□□□□ -0.92
LIMCH1-201ENST00000313860 ANKRD18AQ8IVF6 992 aa9.28□□□□□ -0.92
LIMCH1-201ENST00000313860 SRRTQ9BXP5 876 aaKnown RBP9.28□□□□□ -0.92
LIMCH1-201ENST00000313860 TTC36A6NLP5 189 aa9.27□□□□□ -0.92
LIMCH1-201ENST00000313860 PSMD1Q99460 953 aa9.27□□□□□ -0.92
LIMCH1-201ENST00000313860 SF3A1Q15459 793 aaKnown RBP9.27□□□□□ -0.93
LIMCH1-201ENST00000313860 CCP110O43303 1012 aa9.27□□□□□ -0.93
LIMCH1-201ENST00000313860 ZC4H2Q9NQZ6 224 aa9.27□□□□□ -0.93
LIMCH1-201ENST00000313860 ZCCHC6Q5VYS8 1495 aaKnown RBP9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms