RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 NUP155O75694 1391 aa27.02■■□□□ 1.92
HMGA1-201ENST00000311487 AGLP35573 1532 aa27■■□□□ 1.91
HMGA1-201ENST00000311487 WASHC2CQ9Y4E1 1318 aa26.99■■□□□ 1.91
HMGA1-201ENST00000311487 EIF2AK4Q9P2K8 1649 aaKnown RBP26.98■■□□□ 1.91
HMGA1-201ENST00000311487 MROH1Q8NDA8 1641 aa26.96■■□□□ 1.91
HMGA1-201ENST00000311487 ESF1Q9H501 851 aaKnown RBP26.94■■□□□ 1.9
HMGA1-201ENST00000311487 FOXD1Q16676 465 aa26.94■■□□□ 1.9
HMGA1-201ENST00000311487 RNF17Q9BXT8 1623 aaKnown RBP26.92■■□□□ 1.9
HMGA1-201ENST00000311487 BCORL1Q5H9F3 1711 aa26.92■■□□□ 1.9
HMGA1-201ENST00000311487 KANK1Q14678 1352 aa26.91■■□□□ 1.9
HMGA1-201ENST00000311487 SLC4A1APQ9BWU0 796 aaKnown RBP26.91■■□□□ 1.9
HMGA1-201ENST00000311487 DEPDC5O75140 1603 aa26.91■■□□□ 1.9
HMGA1-201ENST00000311487 UNC13BO14795 1591 aa26.9■■□□□ 1.9
HMGA1-201ENST00000311487 CEBPAP49715 358 aaPredicted RBP26.9■■□□□ 1.9
HMGA1-201ENST00000311487 PRDM15P57071 1507 aaPredicted RBP26.89■■□□□ 1.9
HMGA1-201ENST00000311487 MPHOSPH9Q99550 1183 aa26.88■■□□□ 1.89
HMGA1-201ENST00000311487 CEP152O94986 1710 aa26.88■■□□□ 1.89
HMGA1-201ENST00000311487 KDM4FA0A1W2PPD8 638 aa26.87■■□□□ 1.89
HMGA1-201ENST00000311487 FAM135AQ9P2D6 1515 aa26.86■■□□□ 1.89
HMGA1-201ENST00000311487 CLTCQ00610 1675 aaKnown RBP26.86■■□□□ 1.89
HMGA1-201ENST00000311487 MADDQ8WXG6 1647 aa26.86■■□□□ 1.89
HMGA1-201ENST00000311487 PZPP20742 1482 aa26.85■■□□□ 1.89
HMGA1-201ENST00000311487 ABCC3O15438 1527 aa26.85■■□□□ 1.89
HMGA1-201ENST00000311487 PKD2Q13563 968 aa26.84■■□□□ 1.89
HMGA1-201ENST00000311487 HRCP23327 699 aa26.84■■□□□ 1.89
HMGA1-201ENST00000311487 FBXO31Q5XUX0 539 aaPredicted RBP26.82■■□□□ 1.88
HMGA1-201ENST00000311487 KDM5DQ9BY66 1539 aa26.82■■□□□ 1.88
HMGA1-201ENST00000311487 FER1L4A9Z1Z3 1794 aa26.82■■□□□ 1.88
HMGA1-201ENST00000311487 CFAP65Q6ZU64 1925 aaKnown RBP26.81■■□□□ 1.88
HMGA1-201ENST00000311487 VWDEQ8N2E2 1590 aa26.81■■□□□ 1.88
HMGA1-201ENST00000311487 ZMYM3Q14202 1370 aa26.8■■□□□ 1.88
HMGA1-201ENST00000311487 ADAMTSL3P82987 1691 aa26.8■■□□□ 1.88
HMGA1-201ENST00000311487 RIMS1Q86UR5 1692 aaKnown RBP26.8■■□□□ 1.88
HMGA1-201ENST00000311487 IQGAP3Q86VI3 1631 aa26.8■■□□□ 1.88
HMGA1-201ENST00000311487 PPP6R1Q9UPN7 881 aa26.79■■□□□ 1.88
HMGA1-201ENST00000311487 CAMSAP1Q5T5Y3 1602 aa26.75■■□□□ 1.87
HMGA1-201ENST00000311487 DHX57Q6P158 1386 aaKnown RBP26.74■■□□□ 1.87
HMGA1-201ENST00000311487 NPATQ14207 1427 aa26.74■■□□□ 1.87
HMGA1-201ENST00000311487 E9PCH4 1651 aa26.72■■□□□ 1.87
HMGA1-201ENST00000311487 TET3O43151 1660 aa26.71■■□□□ 1.87
HMGA1-201ENST00000311487 EFCAB6Q5THR3 1501 aa26.71■■□□□ 1.87
HMGA1-201ENST00000311487 LMTK2Q8IWU2 1503 aa26.71■■□□□ 1.87
HMGA1-201ENST00000311487 ZC3H13Q5T200 1668 aaKnown RBP26.71■■□□□ 1.87
HMGA1-201ENST00000311487 CNTLNQ9NXG0 1405 aa26.7■■□□□ 1.87
HMGA1-201ENST00000311487 PTPRMP28827 1452 aa26.69■■□□□ 1.86
HMGA1-201ENST00000311487 CCER1Q8TC90 406 aaPredicted RBP26.68■■□□□ 1.86
HMGA1-201ENST00000311487 C3P01024 1663 aa26.68■■□□□ 1.86
HMGA1-201ENST00000311487 ACIN1Q9UKV3 1341 aaKnown RBP26.65■■□□□ 1.86
HMGA1-201ENST00000311487 MROH2AA6NES4 1674 aa26.62■■□□□ 1.85
HMGA1-201ENST00000311487 ARHGAP31Q2M1Z3 1444 aa26.61■■□□□ 1.85
HMGA1-201ENST00000311487 SIN3AQ96ST3 1273 aa26.61■■□□□ 1.85
HMGA1-201ENST00000311487 UGGT1Q9NYU2 1555 aa26.61■■□□□ 1.85
HMGA1-201ENST00000311487 PLA2R1Q13018 1463 aa26.6■■□□□ 1.85
HMGA1-201ENST00000311487 ERVK-7P63135 1459 aa26.59■■□□□ 1.85
HMGA1-201ENST00000311487 PREX1Q8TCU6 1659 aa26.58■■□□□ 1.85
HMGA1-201ENST00000311487 NEUROD1Q13562 356 aa26.58■■□□□ 1.85
HMGA1-201ENST00000311487 RPRD2Q5VT52 1461 aaKnown RBP26.56■■□□□ 1.84
HMGA1-201ENST00000311487 ANKRD30BQ9BXX2 1392 aa26.56■■□□□ 1.84
HMGA1-201ENST00000311487 CHGAP10645 457 aaKnown RBP26.55■■□□□ 1.84
HMGA1-201ENST00000311487 IDI1Q13907 227 aa26.55■■□□□ 1.84
HMGA1-201ENST00000311487 TNRQ92752 1358 aa26.54■■□□□ 1.84
HMGA1-201ENST00000311487 SYNMO15061 1565 aa26.54■■□□□ 1.84
HMGA1-201ENST00000311487 NOS1P29475 1434 aa26.54■■□□□ 1.84
HMGA1-201ENST00000311487 SPHKAPQ2M3C7 1700 aa26.53■■□□□ 1.84
HMGA1-201ENST00000311487 PTPRTO14522 1441 aa26.52■■□□□ 1.84
HMGA1-201ENST00000311487 SPATA31D1Q6ZQQ2 1576 aa26.51■■□□□ 1.83
HMGA1-201ENST00000311487 CCDC144AA2RUR9 1427 aa26.48■■□□□ 1.83
HMGA1-201ENST00000311487 RGL3Q3MIN7 710 aa26.47■■□□□ 1.83
HMGA1-201ENST00000311487 CLTCL1P53675 1640 aa26.47■■□□□ 1.83
HMGA1-201ENST00000311487 STAG3Q9UJ98 1225 aa26.47■■□□□ 1.83
HMGA1-201ENST00000311487 TRPM2O94759 1503 aa26.46■■□□□ 1.83
HMGA1-201ENST00000311487 SENP3Q9H4L4 574 aaPredicted RBP26.46■■□□□ 1.83
HMGA1-201ENST00000311487 SLC52A1Q9NWF4 448 aa26.43■■□□□ 1.82
HMGA1-201ENST00000311487 NUTM2DQ5VT03 806 aaPredicted RBP26.42■■□□□ 1.82
HMGA1-201ENST00000311487 ZNF326Q5BKZ1 582 aaKnown RBP26.4■■□□□ 1.82
HMGA1-201ENST00000311487 PIK3C2BO00750 1634 aa26.4■■□□□ 1.82
HMGA1-201ENST00000311487 MYO3AQ8NEV4 1616 aa26.39■■□□□ 1.82
HMGA1-201ENST00000311487 HSPA2P54652 639 aa26.38■■□□□ 1.81
HMGA1-201ENST00000311487 AEBP2Q6ZN18 517 aaPredicted RBP26.37■■□□□ 1.81
HMGA1-201ENST00000311487 SETD1BQ9UPS6 1966 aaKnown RBP26.37■■□□□ 1.81
HMGA1-201ENST00000311487 UHRF1BP1Q6BDS2 1440 aa26.36■■□□□ 1.81
HMGA1-201ENST00000311487 NLRP1Q9C000 1473 aa26.34■■□□□ 1.81
HMGA1-201ENST00000311487 MYO5BQ9ULV0 1848 aa26.34■■□□□ 1.81
HMGA1-201ENST00000311487 CEP170BQ9Y4F5 1589 aaPredicted RBP26.33■■□□□ 1.8
HMGA1-201ENST00000311487 KDM2AQ9Y2K7 1162 aa26.32■■□□□ 1.8
HMGA1-201ENST00000311487 A2ML1A8K2U0 1454 aa26.31■■□□□ 1.8
HMGA1-201ENST00000311487 KIF1BO60333 1816 aa26.31■■□□□ 1.8
HMGA1-201ENST00000311487 TMEM131LA2VDJ0 1609 aa26.3■■□□□ 1.8
HMGA1-201ENST00000311487 SPATA31E1Q6ZUB1 1445 aa26.29■■□□□ 1.8
HMGA1-201ENST00000311487 UBR1Q8IWV7 1749 aa26.28■■□□□ 1.8
HMGA1-201ENST00000311487 DCAF11Q8TEB1 546 aa26.28■■□□□ 1.8
HMGA1-201ENST00000311487 L3MBTL2Q969R5 705 aa26.28■■□□□ 1.8
HMGA1-201ENST00000311487 ADGRB3O60242 1522 aa26.28■■□□□ 1.8
HMGA1-201ENST00000311487 THEMISQ8N1K5 641 aaPredicted RBP26.27■■□□□ 1.8
HMGA1-201ENST00000311487 CLSPNQ9HAW4 1339 aa26.27■■□□□ 1.8
HMGA1-201ENST00000311487 LMTK3Q96Q04 1460 aa26.26■■□□□ 1.79
HMGA1-201ENST00000311487 TONSLQ96HA7 1378 aa26.24■■□□□ 1.79
HMGA1-201ENST00000311487 LTKP29376 864 aa26.24■■□□□ 1.79
HMGA1-201ENST00000311487 ZNF142P52746 1687 aaPredicted RBP26.22■■□□□ 1.79
HMGA1-201ENST00000311487 TXNDC2Q86VQ3 553 aa26.22■■□□□ 1.79
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms