RNA–Protein interactions for RNA: ENST00000261811.5

CYSTM1-201, Transcript of cysteine rich transmembrane module containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CYSTM1, Length 1,336 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CYSTM1-201ENST00000261811 PTPRMP28827 1452 aa28.41■■■□□ 2.14
CYSTM1-201ENST00000261811 MROH2AA6NES4 1674 aa28.4■■■□□ 2.14
CYSTM1-201ENST00000261811 RNF17Q9BXT8 1623 aaKnown RBP28.39■■■□□ 2.14
CYSTM1-201ENST00000261811 PTPRKQ15262 1439 aa28.38■■■□□ 2.13
CYSTM1-201ENST00000261811 CLTCQ00610 1675 aaKnown RBP28.38■■■□□ 2.13
CYSTM1-201ENST00000261811 FAM135AQ9P2D6 1515 aa28.38■■■□□ 2.13
CYSTM1-201ENST00000261811 ZC3H13Q5T200 1668 aaKnown RBP28.33■■■□□ 2.13
CYSTM1-201ENST00000261811 ANKRD50Q9ULJ7 1429 aa28.32■■■□□ 2.12
CYSTM1-201ENST00000261811 C3P01024 1663 aa28.32■■■□□ 2.12
CYSTM1-201ENST00000261811 KDM5DQ9BY66 1539 aa28.3■■■□□ 2.12
CYSTM1-201ENST00000261811 DEPDC5O75140 1603 aa28.3■■■□□ 2.12
CYSTM1-201ENST00000261811 WASHC2CQ9Y4E1 1318 aa28.3■■■□□ 2.12
CYSTM1-201ENST00000261811 SETD1BQ9UPS6 1966 aaKnown RBP28.3■■■□□ 2.12
CYSTM1-201ENST00000261811 PLPPR3Q6T4P5 718 aa28.28■■■□□ 2.12
CYSTM1-201ENST00000261811 KANK1Q14678 1352 aa28.28■■■□□ 2.12
CYSTM1-201ENST00000261811 GCC2Q8IWJ2 1684 aa28.26■■■□□ 2.11
CYSTM1-201ENST00000261811 PRDM15P57071 1507 aaPredicted RBP28.25■■■□□ 2.11
CYSTM1-201ENST00000261811 CEP152O94986 1710 aa28.25■■■□□ 2.11
CYSTM1-201ENST00000261811 MROH1Q8NDA8 1641 aa28.24■■■□□ 2.11
CYSTM1-201ENST00000261811 ZMYM3Q14202 1370 aa28.23■■■□□ 2.11
CYSTM1-201ENST00000261811 GRWD1Q9BQ67 446 aaKnown RBP eCLIP28.22■■■□□ 2.11
CYSTM1-201ENST00000261811 CEBPAP49715 358 aaPredicted RBP28.18■■■□□ 2.1
CYSTM1-201ENST00000261811 ABCC3O15438 1527 aa28.18■■■□□ 2.1
CYSTM1-201ENST00000261811 CAMSAP1Q5T5Y3 1602 aa28.18■■■□□ 2.1
CYSTM1-201ENST00000261811 UNC13BO14795 1591 aa28.18■■■□□ 2.1
CYSTM1-201ENST00000261811 PREX1Q8TCU6 1659 aa28.17■■■□□ 2.1
CYSTM1-201ENST00000261811 CFAP65Q6ZU64 1925 aaKnown RBP28.16■■■□□ 2.1
CYSTM1-201ENST00000261811 HFM1A2PYH4 1435 aa28.15■■■□□ 2.1
CYSTM1-201ENST00000261811 NAIPQ13075 1403 aa28.15■■■□□ 2.1
CYSTM1-201ENST00000261811 NPATQ14207 1427 aa28.14■■■□□ 2.09
CYSTM1-201ENST00000261811 PZPP20742 1482 aa28.11■■■□□ 2.09
CYSTM1-201ENST00000261811 VWDEQ8N2E2 1590 aa28.11■■■□□ 2.09
CYSTM1-201ENST00000261811 LMTK2Q8IWU2 1503 aa28.09■■■□□ 2.09
CYSTM1-201ENST00000261811 IQGAP3Q86VI3 1631 aa28.07■■■□□ 2.08
CYSTM1-201ENST00000261811 TET3O43151 1660 aa28.07■■■□□ 2.08
CYSTM1-201ENST00000261811 ACIN1Q9UKV3 1341 aaKnown RBP28.07■■■□□ 2.08
CYSTM1-201ENST00000261811 UHRF1BP1Q6BDS2 1440 aa28.06■■■□□ 2.08
CYSTM1-201ENST00000261811 ARHGAP31Q2M1Z3 1444 aa28.05■■■□□ 2.08
CYSTM1-201ENST00000261811 NUP155O75694 1391 aa28.04■■■□□ 2.08
CYSTM1-201ENST00000261811 EFCAB6Q5THR3 1501 aa28.02■■■□□ 2.08
CYSTM1-201ENST00000261811 MYO3AQ8NEV4 1616 aa28■■■□□ 2.07
CYSTM1-201ENST00000261811 FBXO31Q5XUX0 539 aaPredicted RBP27.98■■■□□ 2.07
CYSTM1-201ENST00000261811 TNRQ92752 1358 aa27.98■■■□□ 2.07
CYSTM1-201ENST00000261811 SETD5Q9C0A6 1442 aa27.98■■■□□ 2.07
CYSTM1-201ENST00000261811 RPRD2Q5VT52 1461 aaKnown RBP27.98■■■□□ 2.07
CYSTM1-201ENST00000261811 LMTK3Q96Q04 1460 aa27.98■■■□□ 2.07
CYSTM1-201ENST00000261811 SPATA31D1Q6ZQQ2 1576 aa27.98■■■□□ 2.07
CYSTM1-201ENST00000261811 ZNF142P52746 1687 aaPredicted RBP27.97■■■□□ 2.07
CYSTM1-201ENST00000261811 TRIM52Q96A61 297 aa27.97■■■□□ 2.07
CYSTM1-201ENST00000261811 ERVK-7P63135 1459 aa27.96■■■□□ 2.07
CYSTM1-201ENST00000261811 E9PCH4 1651 aa27.94■■■□□ 2.06
CYSTM1-201ENST00000261811 NLRP1Q9C000 1473 aa27.92■■■□□ 2.06
CYSTM1-201ENST00000261811 CEP170BQ9Y4F5 1589 aaPredicted RBP27.92■■■□□ 2.06
CYSTM1-201ENST00000261811 A2ML1A8K2U0 1454 aa27.89■■■□□ 2.06
CYSTM1-201ENST00000261811 TRIM26Q12899 539 aaPredicted RBP27.86■■■□□ 2.05
CYSTM1-201ENST00000261811 RAB3GAP2Q9H2M9 1393 aa27.85■■■□□ 2.05
CYSTM1-201ENST00000261811 SLC4A1APQ9BWU0 796 aaKnown RBP27.84■■■□□ 2.05
CYSTM1-201ENST00000261811 SPHKAPQ2M3C7 1700 aa27.84■■■□□ 2.05
CYSTM1-201ENST00000261811 HSPA2P54652 639 aa27.83■■■□□ 2.05
CYSTM1-201ENST00000261811 NOS1P29475 1434 aa27.83■■■□□ 2.05
CYSTM1-201ENST00000261811 HRCP23327 699 aa27.82■■■□□ 2.04
CYSTM1-201ENST00000261811 UGGT1Q9NYU2 1555 aa27.82■■■□□ 2.04
CYSTM1-201ENST00000261811 SLC52A1Q9NWF4 448 aa27.81■■■□□ 2.04
CYSTM1-201ENST00000261811 SYNMO15061 1565 aa27.8■■■□□ 2.04
CYSTM1-201ENST00000261811 KDM5AP29375 1690 aaKnown RBP27.8■■■□□ 2.04
CYSTM1-201ENST00000261811 THEMISQ8N1K5 641 aaPredicted RBP27.79■■■□□ 2.04
CYSTM1-201ENST00000261811 UBR1Q8IWV7 1749 aa27.78■■■□□ 2.04
CYSTM1-201ENST00000261811 STAG3Q9UJ98 1225 aa27.78■■■□□ 2.04
CYSTM1-201ENST00000261811 PIK3C2BO00750 1634 aa27.78■■■□□ 2.04
CYSTM1-201ENST00000261811 PKD2Q13563 968 aa27.76■■■□□ 2.03
CYSTM1-201ENST00000261811 MPHOSPH9Q99550 1183 aa27.73■■■□□ 2.03
CYSTM1-201ENST00000261811 PLA2R1Q13018 1463 aa27.73■■■□□ 2.03
CYSTM1-201ENST00000261811 POLR1AO95602 1720 aaPredicted RBP27.73■■■□□ 2.03
CYSTM1-201ENST00000261811 STRCQ7RTU9 1775 aa27.73■■■□□ 2.03
CYSTM1-201ENST00000261811 IDI1Q13907 227 aa27.71■■■□□ 2.03
CYSTM1-201ENST00000261811 DMRT2Q9Y5R5 561 aa27.71■■■□□ 2.03
CYSTM1-201ENST00000261811 KIF1BO60333 1816 aa27.7■■■□□ 2.03
CYSTM1-201ENST00000261811 MYO5BQ9ULV0 1848 aa27.69■■■□□ 2.02
CYSTM1-201ENST00000261811 PTPRTO14522 1441 aa27.69■■■□□ 2.02
CYSTM1-201ENST00000261811 ADGRB3O60242 1522 aa27.68■■■□□ 2.02
CYSTM1-201ENST00000261811 TRPM2O94759 1503 aa27.68■■■□□ 2.02
CYSTM1-201ENST00000261811 ANKLE2Q86XL3 938 aa27.66■■■□□ 2.02
CYSTM1-201ENST00000261811 TMEM131LA2VDJ0 1609 aa27.63■■■□□ 2.01
CYSTM1-201ENST00000261811 CHGAP10645 457 aaKnown RBP27.63■■■□□ 2.01
CYSTM1-201ENST00000261811 EID1Q9Y6B2 187 aa27.61■■■□□ 2.01
CYSTM1-201ENST00000261811 CLTCL1P53675 1640 aa27.6■■■□□ 2.01
CYSTM1-201ENST00000261811 SLIT1O75093 1534 aa27.6■■■□□ 2.01
CYSTM1-201ENST00000261811 HDGFP51858 240 aaKnown RBP27.6■■■□□ 2.01
CYSTM1-201ENST00000261811 NCKAP5LQ9HCH0 1330 aa27.58■■■□□ 2.01
CYSTM1-201ENST00000261811 TMEM2Q9UHN6 1383 aa27.57■■■□□ 2
CYSTM1-201ENST00000261811 FOXD1Q16676 465 aa27.57■■■□□ 2
CYSTM1-201ENST00000261811 ARHGAP23Q9P227 1491 aa27.56■■■□□ 2
CYSTM1-201ENST00000261811 CCDC144AA2RUR9 1427 aa27.55■■■□□ 2
CYSTM1-201ENST00000261811 TXNDC2Q86VQ3 553 aa27.54■■■□□ 2
CYSTM1-201ENST00000261811 SCAF11Q99590 1463 aaKnown RBP27.53■■■□□ 2
CYSTM1-201ENST00000261811 IQGAP1P46940 1657 aa27.53■■■□□ 2
CYSTM1-201ENST00000261811 ABCF1Q8NE71 845 aaKnown RBP eCLIP27.51■■□□□ 1.99
CYSTM1-201ENST00000261811 MED14O60244 1454 aa27.51■■□□□ 1.99
CYSTM1-201ENST00000261811 NEURL4Q96JN8 1562 aa27.51■■□□□ 1.99
CYSTM1-201ENST00000261811 ZNF326Q5BKZ1 582 aaKnown RBP27.5■■□□□ 1.99
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms