RNA–Protein interactions for RNA: ENST00000218348.7

USP11-201, Transcript of ubiquitin specific peptidase 11, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP11, Length 3,338 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP11-201ENST00000218348 C9orf84Q5VXU9 1444 aa14.27□□□□□ -0.13
USP11-201ENST00000218348 DDX10Q13206 875 aaKnown RBP14.27□□□□□ -0.13
USP11-201ENST00000218348 RNF17Q9BXT8 1623 aaKnown RBP14.26□□□□□ -0.13
USP11-201ENST00000218348 HFM1A2PYH4 1435 aa14.25□□□□□ -0.13
USP11-201ENST00000218348 HNRNPMP52272 730 aaKnown RBP eCLIP14.25□□□□□ -0.13
USP11-201ENST00000218348 NAIPQ13075 1403 aa14.24□□□□□ -0.13
USP11-201ENST00000218348 UNC13BO14795 1591 aa14.24□□□□□ -0.13
USP11-201ENST00000218348 YEATS2Q9ULM3 1422 aa14.24□□□□□ -0.13
USP11-201ENST00000218348 VWDEQ8N2E2 1590 aa14.23□□□□□ -0.13
USP11-201ENST00000218348 TONSLQ96HA7 1378 aa14.22□□□□□ -0.13
USP11-201ENST00000218348 AFAP1Q8N556 730 aa14.21□□□□□ -0.13
USP11-201ENST00000218348 DUOX2Q9NRD8 1548 aa14.21□□□□□ -0.13
USP11-201ENST00000218348 RSPH4AQ5TD94 716 aa14.21□□□□□ -0.14
USP11-201ENST00000218348 AGLP35573 1532 aa14.21□□□□□ -0.14
USP11-201ENST00000218348 KDM5DQ9BY66 1539 aa14.2□□□□□ -0.14
USP11-201ENST00000218348 RAPGEF3O95398 923 aa14.19□□□□□ -0.14
USP11-201ENST00000218348 PRDM15P57071 1507 aaPredicted RBP14.19□□□□□ -0.14
USP11-201ENST00000218348 PPP1R15AO75807 674 aaPredicted RBP14.18□□□□□ -0.14
USP11-201ENST00000218348 ERBINQ96RT1 1412 aa14.18□□□□□ -0.14
USP11-201ENST00000218348 TRHP20396 242 aaPredicted RBP14.15□□□□□ -0.14
USP11-201ENST00000218348 ANP32EQ9BTT0 268 aa14.15□□□□□ -0.14
USP11-201ENST00000218348 IQGAP3Q86VI3 1631 aa14.15□□□□□ -0.14
USP11-201ENST00000218348 ATP10AO60312 1499 aa14.14□□□□□ -0.15
USP11-201ENST00000218348 CNGB1Q14028 1251 aaPredicted RBP14.14□□□□□ -0.15
USP11-201ENST00000218348 MPHOSPH9Q99550 1183 aa14.14□□□□□ -0.15
USP11-201ENST00000218348 A2MP01023 1474 aa14.14□□□□□ -0.15
USP11-201ENST00000218348 ZNF326Q5BKZ1 582 aaKnown RBP14.13□□□□□ -0.15
USP11-201ENST00000218348 SLC4A1APQ9BWU0 796 aaKnown RBP14.13□□□□□ -0.15
USP11-201ENST00000218348 KIF15Q9NS87 1388 aa14.13□□□□□ -0.15
USP11-201ENST00000218348 DHX29Q7Z478 1369 aaKnown RBP14.12□□□□□ -0.15
USP11-201ENST00000218348 ANO8Q9HCE9 1232 aaPredicted RBP14.12□□□□□ -0.15
USP11-201ENST00000218348 ZC3H13Q5T200 1668 aaKnown RBP14.11□□□□□ -0.15
USP11-201ENST00000218348 ANKRD30AQ9BXX3 1397 aa14.11□□□□□ -0.15
USP11-201ENST00000218348 SPAG9O60271 1321 aaKnown RBP14.11□□□□□ -0.15
USP11-201ENST00000218348 LMTK2Q8IWU2 1503 aa14.11□□□□□ -0.15
USP11-201ENST00000218348 ADAMTSL3P82987 1691 aa14.11□□□□□ -0.15
USP11-201ENST00000218348 FAM135AQ9P2D6 1515 aa14.1□□□□□ -0.15
USP11-201ENST00000218348 ANKRD50Q9ULJ7 1429 aa14.09□□□□□ -0.15
USP11-201ENST00000218348 PZPP20742 1482 aa14.09□□□□□ -0.15
USP11-201ENST00000218348 CEP152O94986 1710 aa14.09□□□□□ -0.15
USP11-201ENST00000218348 MROH2AA6NES4 1674 aa14.07□□□□□ -0.16
USP11-201ENST00000218348 L3MBTL2Q969R5 705 aa14.07□□□□□ -0.16
USP11-201ENST00000218348 E9PCH4 1651 aa14.06□□□□□ -0.16
USP11-201ENST00000218348 PLEKHG5O94827 1062 aa14.06□□□□□ -0.16
USP11-201ENST00000218348 POLR3GLQ9BT43 218 aa14.06□□□□□ -0.16
USP11-201ENST00000218348 TET3O43151 1660 aa14.06□□□□□ -0.16
USP11-201ENST00000218348 CAMSAP1Q5T5Y3 1602 aa14.05□□□□□ -0.16
USP11-201ENST00000218348 ABCC3O15438 1527 aa14.05□□□□□ -0.16
USP11-201ENST00000218348 EIF5BO60841 1220 aaKnown RBP14.04□□□□□ -0.16
USP11-201ENST00000218348 TSPY4P0CV99 314 aa14.03□□□□□ -0.16
USP11-201ENST00000218348 TSPY10P0CW01 314 aa14.03□□□□□ -0.16
USP11-201ENST00000218348 EFCAB6Q5THR3 1501 aa14.03□□□□□ -0.16
USP11-201ENST00000218348 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.02□□□□□ -0.168e-7■■□□□ 14.2
USP11-201ENST00000218348 CLTCQ00610 1675 aaKnown RBP14.02□□□□□ -0.16
USP11-201ENST00000218348 FER1L4A9Z1Z3 1794 aa14.02□□□□□ -0.17
USP11-201ENST00000218348 HSPA5P11021 654 aaKnown RBP14□□□□□ -0.17
USP11-201ENST00000218348 PKD2Q13563 968 aa14□□□□□ -0.17
USP11-201ENST00000218348 TIMELESSQ9UNS1 1208 aa14□□□□□ -0.17
USP11-201ENST00000218348 PIK3C2BO00750 1634 aa13.99□□□□□ -0.17
USP11-201ENST00000218348 C3P01024 1663 aa13.99□□□□□ -0.17
USP11-201ENST00000218348 KDM2AQ9Y2K7 1162 aa13.99□□□□□ -0.17
USP11-201ENST00000218348 MADDQ8WXG6 1647 aa13.99□□□□□ -0.17
USP11-201ENST00000218348 SPHKAPQ2M3C7 1700 aa13.97□□□□□ -0.17
USP11-201ENST00000218348 PREX1Q8TCU6 1659 aa13.97□□□□□ -0.17
USP11-201ENST00000218348 ANP32CO43423 234 aa13.97□□□□□ -0.17
USP11-201ENST00000218348 NBPF8Q3BBV2 869 aa13.97□□□□□ -0.17
USP11-201ENST00000218348 ARHGAP31Q2M1Z3 1444 aa13.96□□□□□ -0.17
USP11-201ENST00000218348 PLA2R1Q13018 1463 aa13.96□□□□□ -0.17
USP11-201ENST00000218348 SYNMO15061 1565 aa13.96□□□□□ -0.17
USP11-201ENST00000218348 SPATA31D1Q6ZQQ2 1576 aa13.95□□□□□ -0.18
USP11-201ENST00000218348 MYT1LQ9UL68 1186 aa13.95□□□□□ -0.18
USP11-201ENST00000218348 NUP155O75694 1391 aa13.94□□□□□ -0.18
USP11-201ENST00000218348 PTPRTO14522 1441 aa13.94□□□□□ -0.18
USP11-201ENST00000218348 EIF4G2P78344 907 aaKnown RBP eCLIP13.93□□□□□ -0.18
USP11-201ENST00000218348 RPRD2Q5VT52 1461 aaKnown RBP13.93□□□□□ -0.18
USP11-201ENST00000218348 RIMS1Q86UR5 1692 aaKnown RBP13.92□□□□□ -0.18
USP11-201ENST00000218348 C11orf95C9JLR9 678 aaPredicted RBP13.92□□□□□ -0.18
USP11-201ENST00000218348 NPATQ14207 1427 aa13.92□□□□□ -0.18
USP11-201ENST00000218348 TRPM2O94759 1503 aa13.92□□□□□ -0.18
USP11-201ENST00000218348 RGL3Q3MIN7 710 aa13.92□□□□□ -0.18
USP11-201ENST00000218348 SENP3-EIF4A1A0A087X0R7 540 aa13.91□□□□□ -0.18
USP11-201ENST00000218348 NEURL4Q96JN8 1562 aa13.91□□□□□ -0.18
USP11-201ENST00000218348 NOS1P29475 1434 aa13.91□□□□□ -0.18
USP11-201ENST00000218348 ANKRD30BQ9BXX2 1392 aa13.9□□□□□ -0.18
USP11-201ENST00000218348 BCANQ96GW7 911 aa13.9□□□□□ -0.18
USP11-201ENST00000218348 WASHC2AQ641Q2 1341 aa13.9□□□□□ -0.18
USP11-201ENST00000218348 CLTCL1P53675 1640 aa13.89□□□□□ -0.19
USP11-201ENST00000218348 KDM5AP29375 1690 aaKnown RBP13.89□□□□□ -0.19
USP11-201ENST00000218348 CCDC136Q96JN2 1154 aa13.89□□□□□ -0.19
USP11-201ENST00000218348 IFT172Q9UG01 1749 aa13.88□□□□□ -0.19
USP11-201ENST00000218348 ZNF142P52746 1687 aaPredicted RBP13.88□□□□□ -0.19
USP11-201ENST00000218348 PPP6R1Q9UPN7 881 aa13.88□□□□□ -0.19
USP11-201ENST00000218348 KIF3BO15066 747 aa13.87□□□□□ -0.19
USP11-201ENST00000218348 ERVK-7P63135 1459 aa13.86□□□□□ -0.19
USP11-201ENST00000218348 CNTLNQ9NXG0 1405 aa13.85□□□□□ -0.19
USP11-201ENST00000218348 DCAF11Q8TEB1 546 aa13.85□□□□□ -0.19
USP11-201ENST00000218348 MYO3AQ8NEV4 1616 aa13.85□□□□□ -0.19
USP11-201ENST00000218348 MYO5BQ9ULV0 1848 aa13.84□□□□□ -0.19
USP11-201ENST00000218348 UGGT1Q9NYU2 1555 aa13.84□□□□□ -0.19
USP11-201ENST00000218348 DAXXQ9UER7 740 aaPredicted RBP13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms