RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-222ENST00000642141 XKR3Q5GH77 459 aa11.56□□□□□ -0.56
SCN1A-222ENST00000642141 ODR4Q5SWX8 454 aa11.56□□□□□ -0.56
SCN1A-222ENST00000642141 NCAPH2Q6IBW4 605 aa11.56□□□□□ -0.56
SCN1A-222ENST00000642141 B3GNT9Q6UX72 402 aa11.56□□□□□ -0.56
SCN1A-222ENST00000642141 ANO5Q75V66 913 aa11.56□□□□□ -0.56
SCN1A-222ENST00000642141 ADGRD2Q7Z7M1 963 aa11.56□□□□□ -0.56
SCN1A-222ENST00000642141 RBM23Q86U06 439 aaKnown RBP11.56□□□□□ -0.56
SCN1A-222ENST00000642141 RHPN2Q8IUC4 686 aa11.56□□□□□ -0.56
SCN1A-222ENST00000642141 RDM1Q8NG50 284 aa11.56□□□□□ -0.56
SCN1A-222ENST00000642141 SPPL3Q8TCT6 385 aa11.56□□□□□ -0.56
SCN1A-222ENST00000642141 MICAL1Q8TDZ2 1067 aa11.56□□□□□ -0.56
SCN1A-222ENST00000642141 HAS1Q92839 578 aa11.56□□□□□ -0.56
SCN1A-222ENST00000642141 KHSRPQ92945 711 aaKnown RBP eCLIP11.56□□□□□ -0.56
SCN1A-222ENST00000642141 GTF3C6Q969F1 213 aa11.56□□□□□ -0.56
SCN1A-222ENST00000642141 NIFKQ9BYG3 293 aaKnown RBP11.56□□□□□ -0.56
SCN1A-222ENST00000642141 ATP6V0A4Q9HBG4 840 aa11.56□□□□□ -0.56
SCN1A-222ENST00000642141 KCNMB3Q9NPA1 279 aa11.56□□□□□ -0.56
SCN1A-222ENST00000642141 C1orf112Q9NSG2 853 aa11.56□□□□□ -0.56
SCN1A-222ENST00000642141 TYW1Q9NV66 732 aaKnown RBP11.56□□□□□ -0.56
SCN1A-222ENST00000642141 RGL1Q9NZL6 768 aa11.56□□□□□ -0.56
SCN1A-222ENST00000642141 SUCLA2Q9P2R7 463 aaPredicted RBP11.56□□□□□ -0.56
SCN1A-222ENST00000642141 WRAP73Q9P2S5 460 aaPredicted RBP11.56□□□□□ -0.56
SCN1A-222ENST00000642141 VAV3Q9UKW4 847 aa11.56□□□□□ -0.56
SCN1A-222ENST00000642141 RWDD3Q9Y3V2 267 aa11.56□□□□□ -0.56
SCN1A-222ENST00000642141 MYH9P35579 1960 aaKnown RBP11.56□□□□□ -0.56
SCN1A-222ENST00000642141 NLRC5Q86WI3 1866 aa11.55□□□□□ -0.56
SCN1A-222ENST00000642141 A0A087WZ62 844 aa11.55□□□□□ -0.56
SCN1A-222ENST00000642141 BTBD18B2RXH4 712 aa11.55□□□□□ -0.56
SCN1A-222ENST00000642141 CENPBP07199 599 aaPredicted RBP11.55□□□□□ -0.56
SCN1A-222ENST00000642141 DARSP14868 501 aaKnown RBP11.55□□□□□ -0.56
SCN1A-222ENST00000642141 ZSCAN20P17040 1043 aaPredicted RBP11.55□□□□□ -0.56
SCN1A-222ENST00000642141 ATP2B1P20020 1258 aa11.55□□□□□ -0.56
SCN1A-222ENST00000642141 PBX3P40426 434 aa11.55□□□□□ -0.56
SCN1A-222ENST00000642141 DNM2P50570 870 aa11.55□□□□□ -0.56
SCN1A-222ENST00000642141 PSMC5P62195 406 aa11.55□□□□□ -0.56
SCN1A-222ENST00000642141 FAM189BP81408 668 aa11.55□□□□□ -0.56
SCN1A-222ENST00000642141 CYP4A11Q02928 519 aa11.55□□□□□ -0.56
SCN1A-222ENST00000642141 CTTNQ14247 550 aaKnown RBP11.55□□□□□ -0.56
SCN1A-222ENST00000642141 MOXD1Q6UVY6 613 aa11.55□□□□□ -0.56
SCN1A-222ENST00000642141 NSUN7Q8NE18 718 aaKnown RBP11.55□□□□□ -0.56
SCN1A-222ENST00000642141 POF1BQ8WVV4 589 aa11.55□□□□□ -0.56
SCN1A-222ENST00000642141 WASF1Q92558 559 aa11.55□□□□□ -0.56
SCN1A-222ENST00000642141 TMEM143Q96AN5 459 aa11.55□□□□□ -0.56
SCN1A-222ENST00000642141 NLRP4Q96MN2 994 aa11.55□□□□□ -0.56
SCN1A-222ENST00000642141 CEP89Q96ST8 783 aa11.55□□□□□ -0.56
SCN1A-222ENST00000642141 FDXACB1Q9BRP7 624 aaPredicted RBP11.55□□□□□ -0.56
SCN1A-222ENST00000642141 PLVAPQ9BX97 442 aa11.55□□□□□ -0.56
SCN1A-222ENST00000642141 EPHX3Q9H6B9 360 aa11.55□□□□□ -0.56
SCN1A-222ENST00000642141 PCDHB12Q9Y5F1 795 aa11.55□□□□□ -0.56
SCN1A-222ENST00000642141 MYO7AQ13402 2215 aa11.54□□□□□ -0.56
SCN1A-222ENST00000642141 A0A087WWV3 80 aa11.54□□□□□ -0.56
SCN1A-222ENST00000642141 GRXCR2A6NFK2 248 aa11.54□□□□□ -0.56
SCN1A-222ENST00000642141 WNT7AO00755 349 aa11.54□□□□□ -0.56
SCN1A-222ENST00000642141 PER2O15055 1255 aa11.54□□□□□ -0.56
SCN1A-222ENST00000642141 MMP1P03956 469 aa11.54□□□□□ -0.56
SCN1A-222ENST00000642141 SRGAP2CP0DJJ0 459 aa11.54□□□□□ -0.56
SCN1A-222ENST00000642141 SSTR3P32745 418 aaPredicted RBP11.54□□□□□ -0.56
SCN1A-222ENST00000642141 LTBRP36941 435 aa11.54□□□□□ -0.56
SCN1A-222ENST00000642141 QARSP47897 775 aaKnown RBP11.54□□□□□ -0.56
SCN1A-222ENST00000642141 NRIP1P48552 1158 aa11.54□□□□□ -0.56
SCN1A-222ENST00000642141 PPP2R5CQ13362 524 aa11.54□□□□□ -0.56
SCN1A-222ENST00000642141 PPP4R3AQ6IN85 833 aa11.54□□□□□ -0.56
SCN1A-222ENST00000642141 LRRC55Q6ZSA7 311 aa11.54□□□□□ -0.56
SCN1A-222ENST00000642141 ECHDC2Q86YB7 292 aa11.54□□□□□ -0.56
SCN1A-222ENST00000642141 TPH2Q8IWU9 490 aa11.54□□□□□ -0.56
SCN1A-222ENST00000642141 THNSL1Q8IYQ7 743 aa11.54□□□□□ -0.56
SCN1A-222ENST00000642141 FAM177A1Q8N128 213 aaPredicted RBP11.54□□□□□ -0.56
SCN1A-222ENST00000642141 NEK9Q8TD19 979 aa11.54□□□□□ -0.56
SCN1A-222ENST00000642141 PABPC5Q96DU9 382 aaKnown RBP11.54□□□□□ -0.56
SCN1A-222ENST00000642141 DYDC2Q96IM9 177 aa11.54□□□□□ -0.56
SCN1A-222ENST00000642141 CEP170P1Q96L14 293 aa11.54□□□□□ -0.56
SCN1A-222ENST00000642141 FAM20AQ96MK3 541 aa11.54□□□□□ -0.56
SCN1A-222ENST00000642141 GCOM2Q9BZD3 368 aaPredicted RBP11.54□□□□□ -0.56
SCN1A-222ENST00000642141 LMAN2LQ9H0V9 348 aa11.54□□□□□ -0.56
SCN1A-222ENST00000642141 CYP26B1Q9NR63 512 aa11.54□□□□□ -0.56
SCN1A-222ENST00000642141 RNF19AQ9NV58 838 aa11.54□□□□□ -0.56
SCN1A-222ENST00000642141 TMEM161AQ9NX61 479 aa11.54□□□□□ -0.56
SCN1A-222ENST00000642141 C5orf42Q9H799 3197 aa11.54□□□□□ -0.56
SCN1A-222ENST00000642141 FAM86C2PA6NEL3 165 aa11.53□□□□□ -0.56
SCN1A-222ENST00000642141 MAFO75444 373 aaPredicted RBP11.53□□□□□ -0.56
SCN1A-222ENST00000642141 FGF18O76093 207 aa11.53□□□□□ -0.56
SCN1A-222ENST00000642141 GCFC2P16383 781 aaKnown RBP11.53□□□□□ -0.56
SCN1A-222ENST00000642141 RBM10P98175 930 aaKnown RBP11.53□□□□□ -0.56
SCN1A-222ENST00000642141 ST3GAL1Q11201 340 aa11.53□□□□□ -0.56
SCN1A-222ENST00000642141 TRIM29Q14134 588 aa11.53□□□□□ -0.56
SCN1A-222ENST00000642141 CLLU1OSQ5K130 101 aa11.53□□□□□ -0.56
SCN1A-222ENST00000642141 CCDC83Q8IWF9 413 aa11.53□□□□□ -0.56
SCN1A-222ENST00000642141 DIS3L2Q8IYB7 885 aaKnown RBP11.53□□□□□ -0.56
SCN1A-222ENST00000642141 ABI1Q8IZP0 508 aa11.53□□□□□ -0.56
SCN1A-222ENST00000642141 COLGALT1Q8NBJ5 622 aa11.53□□□□□ -0.56
SCN1A-222ENST00000642141 HELQQ8TDG4 1101 aa11.53□□□□□ -0.56
SCN1A-222ENST00000642141 PRPF31Q8WWY3 499 aaKnown RBP11.53□□□□□ -0.56
SCN1A-222ENST00000642141 TNFRSF25Q93038 417 aa11.53□□□□□ -0.56
SCN1A-222ENST00000642141 LPPQ93052 612 aa11.53□□□□□ -0.56
SCN1A-222ENST00000642141 P2RX5Q93086 422 aa11.53□□□□□ -0.56
SCN1A-222ENST00000642141 CASD1Q96PB1 797 aa11.53□□□□□ -0.56
SCN1A-222ENST00000642141 LXNQ9BS40 222 aa11.53□□□□□ -0.56
SCN1A-222ENST00000642141 CWH43Q9H720 699 aa11.53□□□□□ -0.56
SCN1A-222ENST00000642141 TLE6Q9H808 572 aa11.53□□□□□ -0.56
SCN1A-222ENST00000642141 BRMS1Q9HCU9 246 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms