RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 ELF4Q99607 663 aaPredicted RBP6.29□□□□□ -1.4
CD44-239ENST00000639002 TLR9Q9NR96 1032 aa6.29□□□□□ -1.4
CD44-239ENST00000639002 SAE1Q9UBE0 346 aaPredicted RBP6.29□□□□□ -1.4
CD44-239ENST00000639002 UBA6A0AVT1 1052 aaPredicted RBP6.28□□□□□ -1.4
CD44-239ENST00000639002 H7C1D1 291 aa6.28□□□□□ -1.4
CD44-239ENST00000639002 CYP17A1P05093 508 aa6.28□□□□□ -1.4
CD44-239ENST00000639002 C1SP09871 688 aa6.28□□□□□ -1.4
CD44-239ENST00000639002 ROM1Q03395 351 aa6.28□□□□□ -1.4
CD44-239ENST00000639002 MAP3K12Q12852 859 aa6.28□□□□□ -1.4
CD44-239ENST00000639002 SLFN12LQ6IEE8 588 aa6.28□□□□□ -1.4
CD44-239ENST00000639002 OR5AN1Q8NGI8 311 aa6.28□□□□□ -1.4
CD44-239ENST00000639002 E2F7Q96AV8 911 aa6.28□□□□□ -1.4
CD44-239ENST00000639002 FAM89AQ96GI7 184 aa6.28□□□□□ -1.4
CD44-239ENST00000639002 GPHA2Q96T91 129 aa6.28□□□□□ -1.4
CD44-239ENST00000639002 ORAI3Q9BRQ5 295 aa6.28□□□□□ -1.4
CD44-239ENST00000639002 HAPLN2Q9GZV7 340 aa6.28□□□□□ -1.4
CD44-239ENST00000639002 CABP5Q9NP86 173 aa6.28□□□□□ -1.4
CD44-239ENST00000639002 ING1Q9UK53 422 aaPredicted RBP6.28□□□□□ -1.4
CD44-239ENST00000639002 DENND2AQ9ULE3 1009 aa6.28□□□□□ -1.4
CD44-239ENST00000639002 ACRV1P26436 265 aa6.27□□□□□ -1.41
CD44-239ENST00000639002 HIBADHP31937 336 aaKnown RBP6.27□□□□□ -1.41
CD44-239ENST00000639002 EPHA7Q15375 998 aa6.27□□□□□ -1.41
CD44-239ENST00000639002 C21orf62-AS1Q17RA5 79 aa6.27□□□□□ -1.41
CD44-239ENST00000639002 TTC38Q5R3I4 469 aa6.27□□□□□ -1.41
CD44-239ENST00000639002 ADGRE4PQ86SQ3 457 aa6.27□□□□□ -1.41
CD44-239ENST00000639002 C1orf210Q8IVY1 113 aa6.27□□□□□ -1.41
CD44-239ENST00000639002 DRC1Q96MC2 740 aa6.27□□□□□ -1.41
CD44-239ENST00000639002 ZNF341Q9BYN7 854 aa6.27□□□□□ -1.41
CD44-239ENST00000639002 MTFR1LQ9H019 292 aa6.27□□□□□ -1.41
CD44-239ENST00000639002 H2AFY2Q9P0M6 372 aaPredicted RBP6.27□□□□□ -1.41
CD44-239ENST00000639002 SH3BP1Q9Y3L3 701 aa6.27□□□□□ -1.41
CD44-239ENST00000639002 NARSO43776 548 aaKnown RBP6.26□□□□□ -1.41
CD44-239ENST00000639002 ATP2A2P16615 1042 aaKnown RBP6.26□□□□□ -1.41
CD44-239ENST00000639002 DGKDQ16760 1214 aa6.26□□□□□ -1.41
CD44-239ENST00000639002 CFAP100Q494V2 611 aa6.26□□□□□ -1.41
CD44-239ENST00000639002 UBE2R2Q712K3 238 aaPredicted RBP6.26□□□□□ -1.41
CD44-239ENST00000639002 KANSL1Q7Z3B3 1105 aa6.26□□□□□ -1.41
CD44-239ENST00000639002 CACTINQ8WUQ7 758 aaKnown RBP6.26□□□□□ -1.41
CD44-239ENST00000639002 LPPQ93052 612 aa6.26□□□□□ -1.41
CD44-239ENST00000639002 SLC7A6OSQ96CW6 309 aaPredicted RBP6.26□□□□□ -1.41
CD44-239ENST00000639002 TUBGCP5Q96RT8 1024 aa6.26□□□□□ -1.41
CD44-239ENST00000639002 MRIQ9BWK5 157 aa6.26□□□□□ -1.41
CD44-239ENST00000639002 SLC6A15Q9H2J7 730 aa6.26□□□□□ -1.41
CD44-239ENST00000639002 PCIF1Q9H4Z3 704 aa6.26□□□□□ -1.41
CD44-239ENST00000639002 OXSMQ9NWU1 459 aa6.26□□□□□ -1.41
CD44-239ENST00000639002 KCMF1Q9P0J7 381 aa6.26□□□□□ -1.41
CD44-239ENST00000639002 SPO11Q9Y5K1 396 aa6.26□□□□□ -1.41
CD44-239ENST00000639002 RBM8AQ9Y5S9 174 aaKnown RBP6.26□□□□□ -1.41
CD44-239ENST00000639002 H2AFYO75367 372 aaKnown RBP6.25□□□□□ -1.41
CD44-239ENST00000639002 PTH1RQ03431 593 aa6.25□□□□□ -1.41
CD44-239ENST00000639002 ZNF174Q15697 407 aa6.25□□□□□ -1.41
CD44-239ENST00000639002 TKFCQ3LXA3 575 aa6.25□□□□□ -1.41
CD44-239ENST00000639002 FNDC7Q5VTL7 733 aa6.25□□□□□ -1.41
CD44-239ENST00000639002 PRAMEF9Q5VWM5 478 aa6.25□□□□□ -1.41
CD44-239ENST00000639002 UNQ6494/PRO21346Q6UXR6 183 aa6.25□□□□□ -1.41
CD44-239ENST00000639002 CLEC14AQ86T13 490 aa6.25□□□□□ -1.41
CD44-239ENST00000639002 SGMS1Q86VZ5 419 aa6.25□□□□□ -1.41
CD44-239ENST00000639002 D2HGDHQ8N465 521 aa6.25□□□□□ -1.41
CD44-239ENST00000639002 UBXN4Q92575 508 aa6.25□□□□□ -1.41
CD44-239ENST00000639002 GFM2Q969S9 779 aaKnown RBP6.25□□□□□ -1.41
CD44-239ENST00000639002 RPL10LQ96L21 214 aaKnown RBP6.25□□□□□ -1.41
CD44-239ENST00000639002 INTS7Q9NVH2 962 aaKnown RBP6.25□□□□□ -1.41
CD44-239ENST00000639002 CEP72Q9P209 647 aa6.25□□□□□ -1.41
CD44-239ENST00000639002 MAGEC2Q9UBF1 373 aaPredicted RBP6.25□□□□□ -1.41
CD44-239ENST00000639002 CD2APQ9Y5K6 639 aa6.25□□□□□ -1.41
CD44-239ENST00000639002 RANGAP1P46060 587 aaPredicted RBP6.24□□□□□ -1.41
CD44-239ENST00000639002 HMGA2P52926 109 aa6.24□□□□□ -1.41
CD44-239ENST00000639002 SESN2P58004 480 aaPredicted RBP6.24□□□□□ -1.41
CD44-239ENST00000639002 NXPE1Q8N323 547 aa6.24□□□□□ -1.41
CD44-239ENST00000639002 ANKRD53Q8N9V6 530 aa6.24□□□□□ -1.41
CD44-239ENST00000639002 RTF1Q92541 710 aaKnown RBP6.24□□□□□ -1.41
CD44-239ENST00000639002 PITHD1Q9GZP4 211 aaPredicted RBP6.24□□□□□ -1.41
CD44-239ENST00000639002 ZNF703Q9H7S9 590 aaPredicted RBP6.24□□□□□ -1.41
CD44-239ENST00000639002 ZMAT4Q9H898 229 aa6.24□□□□□ -1.41
CD44-239ENST00000639002 DNAI1Q9UI46 699 aa6.24□□□□□ -1.41
CD44-239ENST00000639002 A0A0A6YYJ9 748 aa6.23□□□□□ -1.41
CD44-239ENST00000639002 A0A0A6YYK5 440 aaPredicted RBP6.23□□□□□ -1.41
CD44-239ENST00000639002 A0A1W2PRX2 142 aa6.23□□□□□ -1.41
CD44-239ENST00000639002 KRTAP23-1A1A580 65 aa6.23□□□□□ -1.41
CD44-239ENST00000639002 ZNF891A8MT65 544 aaPredicted RBP6.23□□□□□ -1.41
CD44-239ENST00000639002 PRPF6O94906 941 aaKnown RBP6.23□□□□□ -1.41
CD44-239ENST00000639002 F2P00734 622 aa6.23□□□□□ -1.41
CD44-239ENST00000639002 HNRNPLP14866 589 aaKnown RBP eCLIP6.23□□□□□ -1.41
CD44-239ENST00000639002 POU3F2P20265 443 aaPredicted RBP6.23□□□□□ -1.41
CD44-239ENST00000639002 FLT3P36888 993 aa6.23□□□□□ -1.41
CD44-239ENST00000639002 BPIFB4P59827 614 aa6.23□□□□□ -1.41
CD44-239ENST00000639002 DSG1Q02413 1049 aa6.23□□□□□ -1.41
CD44-239ENST00000639002 TCIRG1Q13488 830 aa6.23□□□□□ -1.41
CD44-239ENST00000639002 LSM12Q3MHD2 195 aaKnown RBP6.23□□□□□ -1.41
CD44-239ENST00000639002 BMP8AQ7Z5Y6 402 aa6.23□□□□□ -1.41
CD44-239ENST00000639002 NME9Q86XW9 330 aa6.23□□□□□ -1.41
CD44-239ENST00000639002 PLA2G15Q8NCC3 412 aa6.23□□□□□ -1.41
CD44-239ENST00000639002 DYDC2Q96IM9 177 aa6.23□□□□□ -1.41
CD44-239ENST00000639002 PLEKHG4BQ96PX9 1271 aa6.23□□□□□ -1.41
CD44-239ENST00000639002 MPHOSPH9Q99550 1183 aa6.23□□□□□ -1.41
CD44-239ENST00000639002 SOX7Q9BT81 388 aa6.23□□□□□ -1.41
CD44-239ENST00000639002 MYL10Q9BUA6 226 aa6.23□□□□□ -1.41
CD44-239ENST00000639002 CAPN14A8MX76 684 aa6.22□□□□□ -1.41
CD44-239ENST00000639002 ELL2O00472 640 aaPredicted RBP6.22□□□□□ -1.41
CD44-239ENST00000639002 TGM5O43548 720 aa6.22□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms