RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 RPL13P26373 211 aaKnown RBP18.54■□□□□ 0.56
CLN3-252ENST00000636907 NPTX2P47972 431 aa18.54■□□□□ 0.56
CLN3-252ENST00000636907 POLGP54098 1239 aaPredicted RBP18.54■□□□□ 0.56
CLN3-252ENST00000636907 GTF2BQ00403 316 aa18.54■□□□□ 0.56
CLN3-252ENST00000636907 MAP2K5Q13163 448 aa18.54■□□□□ 0.56
CLN3-252ENST00000636907 GRM1Q13255 1194 aa18.54■□□□□ 0.56
CLN3-252ENST00000636907 DMP1Q13316 513 aaPredicted RBP18.54■□□□□ 0.56
CLN3-252ENST00000636907 TARBP2Q15633 366 aaKnown RBP18.54■□□□□ 0.56
CLN3-252ENST00000636907 NFIL3Q16649 462 aa18.54■□□□□ 0.56
CLN3-252ENST00000636907 PAXIP1Q6ZW49 1069 aaPredicted RBP18.54■□□□□ 0.56
CLN3-252ENST00000636907 HAUS6Q7Z4H7 955 aa18.54■□□□□ 0.56
CLN3-252ENST00000636907 GLG1Q92896 1179 aa18.54■□□□□ 0.56
CLN3-252ENST00000636907 GBP3Q9H0R5 595 aa18.54■□□□□ 0.56
CLN3-252ENST00000636907 SLC5A4Q9NY91 659 aa18.54■□□□□ 0.56
CLN3-252ENST00000636907 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP18.54■□□□□ 0.56
CLN3-252ENST00000636907 EMSYQ7Z589 1322 aa18.54■□□□□ 0.56
CLN3-252ENST00000636907 C11orf97A0A1B0GVM6 126 aaPredicted RBP18.54■□□□□ 0.56
CLN3-252ENST00000636907 AKR1B15C9JRZ8 316 aaPredicted RBP18.54■□□□□ 0.56
CLN3-252ENST00000636907 CASP14P31944 242 aa18.54■□□□□ 0.56
CLN3-252ENST00000636907 LAMC2Q13753 1193 aa18.54■□□□□ 0.56
CLN3-252ENST00000636907 CYP4F22Q6NT55 531 aa18.54■□□□□ 0.56
CLN3-252ENST00000636907 HS2ST1Q7LGA3 356 aa18.54■□□□□ 0.56
CLN3-252ENST00000636907 PLPPR4Q7Z2D5 763 aa18.54■□□□□ 0.56
CLN3-252ENST00000636907 SYCP3Q8IZU3 236 aa18.54■□□□□ 0.56
CLN3-252ENST00000636907 SLC17A8Q8NDX2 589 aa18.54■□□□□ 0.56
CLN3-252ENST00000636907 CPLX3Q8WVH0 158 aa18.54■□□□□ 0.56
CLN3-252ENST00000636907 FAM167AQ96KS9 214 aa18.54■□□□□ 0.56
CLN3-252ENST00000636907 POLR3FQ9H1D9 316 aaPredicted RBP18.54■□□□□ 0.56
CLN3-252ENST00000636907 DHX33Q9H6R0 707 aaKnown RBP18.54■□□□□ 0.56
CLN3-252ENST00000636907 C17orf75Q9HAS0 396 aa18.54■□□□□ 0.56
CLN3-252ENST00000636907 CCDC169A6NNP5 214 aa18.53■□□□□ 0.56
CLN3-252ENST00000636907 TOMM70O94826 608 aa18.53■□□□□ 0.56
CLN3-252ENST00000636907 GH1P01241 217 aa18.53■□□□□ 0.56
CLN3-252ENST00000636907 MARK3P27448 753 aa18.53■□□□□ 0.56
CLN3-252ENST00000636907 SMTNP53814 917 aa18.53■□□□□ 0.56
CLN3-252ENST00000636907 RTP1P59025 263 aa18.53■□□□□ 0.56
CLN3-252ENST00000636907 ACVR2BQ13705 512 aa18.53■□□□□ 0.56
CLN3-252ENST00000636907 SYCP1Q15431 976 aa18.53■□□□□ 0.56
CLN3-252ENST00000636907 FKBP15Q5T1M5 1219 aa18.53■□□□□ 0.56
CLN3-252ENST00000636907 TRIM59Q8IWR1 403 aa18.53■□□□□ 0.56
CLN3-252ENST00000636907 MSL3Q8N5Y2 521 aaKnown RBP18.53■□□□□ 0.56
CLN3-252ENST00000636907 TMEM161BQ8NDZ6 487 aa18.53■□□□□ 0.56
CLN3-252ENST00000636907 SPIRE2Q8WWL2 714 aa18.53■□□□□ 0.56
CLN3-252ENST00000636907 ACCSQ96QU6 501 aa18.53■□□□□ 0.56
CLN3-252ENST00000636907 ERGIC2Q96RQ1 377 aa18.53■□□□□ 0.56
CLN3-252ENST00000636907 KIFC3Q9BVG8 833 aa18.53■□□□□ 0.56
CLN3-252ENST00000636907 TMX1Q9H3N1 280 aa18.53■□□□□ 0.56
CLN3-252ENST00000636907 ABHD16BQ9H3Z7 469 aa18.53■□□□□ 0.56
CLN3-252ENST00000636907 TMEM206Q9H813 350 aa18.53■□□□□ 0.56
CLN3-252ENST00000636907 KMT5AQ9NQR1 393 aa18.53■□□□□ 0.56
CLN3-252ENST00000636907 AGPAT3Q9NRZ7 376 aa18.53■□□□□ 0.56
CLN3-252ENST00000636907 SLC16A3O15427 465 aaKnown RBP18.52■□□□□ 0.56
CLN3-252ENST00000636907 AKAP3O75969 853 aa18.52■□□□□ 0.56
CLN3-252ENST00000636907 CASP4P49662 377 aa18.52■□□□□ 0.56
CLN3-252ENST00000636907 FXR1P51114 621 aaKnown RBP eCLIP18.52■□□□□ 0.56
CLN3-252ENST00000636907 TRIM14Q14142 442 aa18.52■□□□□ 0.56
CLN3-252ENST00000636907 PLCB4Q15147 1175 aa18.52■□□□□ 0.56
CLN3-252ENST00000636907 FRMD5Q7Z6J6 570 aa18.52■□□□□ 0.56
CLN3-252ENST00000636907 CCDC112Q8NEF3 446 aa18.52■□□□□ 0.56
CLN3-252ENST00000636907 BBXQ8WY36 941 aaPredicted RBP18.52■□□□□ 0.56
CLN3-252ENST00000636907 USP6NLQ92738 828 aa18.52■□□□□ 0.56
CLN3-252ENST00000636907 NTPCRQ9BSD7 190 aaKnown RBP18.52■□□□□ 0.56
CLN3-252ENST00000636907 ZHX1Q9UKY1 873 aaPredicted RBP18.52■□□□□ 0.56
CLN3-252ENST00000636907 MFAP3LO75121 409 aa18.51■□□□□ 0.55
CLN3-252ENST00000636907 HOXC6P09630 235 aa18.51■□□□□ 0.55
CLN3-252ENST00000636907 CLCN1P35523 988 aa18.51■□□□□ 0.55
CLN3-252ENST00000636907 RFC5P40937 340 aa18.51■□□□□ 0.55
CLN3-252ENST00000636907 KLK7P49862 253 aa18.51■□□□□ 0.55
CLN3-252ENST00000636907 TMEM139Q8IV31 216 aa18.51■□□□□ 0.55
CLN3-252ENST00000636907 GOLGA5Q8TBA6 731 aa18.51■□□□□ 0.55
CLN3-252ENST00000636907 ATP8B4Q8TF62 1192 aa18.51■□□□□ 0.55
CLN3-252ENST00000636907 SLC7A3Q8WY07 619 aa18.51■□□□□ 0.55
CLN3-252ENST00000636907 EMID1Q96A84 441 aaPredicted RBP18.51■□□□□ 0.55
CLN3-252ENST00000636907 TMEM143Q96AN5 459 aa18.51■□□□□ 0.55
CLN3-252ENST00000636907 SMARCAD1Q9H4L7 1026 aa18.51■□□□□ 0.55
CLN3-252ENST00000636907 DMAC2Q9NW81 257 aa18.51■□□□□ 0.55
CLN3-252ENST00000636907 FLRT1Q9NZU1 646 aa18.51■□□□□ 0.55
CLN3-252ENST00000636907 ARMCX3Q9UH62 379 aaPredicted RBP18.51■□□□□ 0.55
CLN3-252ENST00000636907 DOCK3Q8IZD9 2030 aa18.51■□□□□ 0.55
CLN3-252ENST00000636907 RNF225M0QZC1 329 aaPredicted RBP18.5■□□□□ 0.55
CLN3-252ENST00000636907 CA12O43570 354 aa18.5■□□□□ 0.55
CLN3-252ENST00000636907 NRDCO43847 1150 aa18.5■□□□□ 0.55
CLN3-252ENST00000636907 TPM1P09493 284 aa18.5■□□□□ 0.55
CLN3-252ENST00000636907 EPB41P11171 864 aaKnown RBP18.5■□□□□ 0.55
CLN3-252ENST00000636907 SMPD1P17405 629 aa18.5■□□□□ 0.55
CLN3-252ENST00000636907 NOLC1Q14978 699 aaKnown RBP eCLIP18.5■□□□□ 0.55
CLN3-252ENST00000636907 IFT74Q96LB3 600 aa18.5■□□□□ 0.55
CLN3-252ENST00000636907 TBX20Q9UMR3 447 aa18.5■□□□□ 0.55
CLN3-252ENST00000636907 UTP18Q9Y5J1 556 aaKnown RBP eCLIP18.5■□□□□ 0.55
CLN3-252ENST00000636907 ADGRA3Q8IWK6 1321 aa18.5■□□□□ 0.55
CLN3-252ENST00000636907 DENND3A2RUS2 1198 aa18.5■□□□□ 0.55
CLN3-252ENST00000636907 RASSF10A6NK89 507 aa18.5■□□□□ 0.55
CLN3-252ENST00000636907 TISP43B9A030 160 aa18.5■□□□□ 0.55
CLN3-252ENST00000636907 MAFO75444 373 aaPredicted RBP18.5■□□□□ 0.55
CLN3-252ENST00000636907 ARL2P36404 184 aa18.5■□□□□ 0.55
CLN3-252ENST00000636907 SLC26A2P50443 739 aa18.5■□□□□ 0.55
CLN3-252ENST00000636907 CYP2J2P51589 502 aa18.5■□□□□ 0.55
CLN3-252ENST00000636907 DUSP28Q4G0W2 176 aa18.5■□□□□ 0.55
CLN3-252ENST00000636907 CNGA4Q8IV77 575 aa18.5■□□□□ 0.55
CLN3-252ENST00000636907 SLC9A9Q8IVB4 645 aa18.5■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms