RNA–Protein interactions for RNA: ENST00000621814.4

CCDC88A-214, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5 BASIC

Gene CCDC88A, Length 3,089 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-214ENST00000621814 DLG4P78352 724 aa14.06□□□□□ -0.16
CCDC88A-214ENST00000621814 CEP55Q53EZ4 464 aa14.06□□□□□ -0.16
CCDC88A-214ENST00000621814 ZNF746Q6NUN9 644 aaPredicted RBP14.06□□□□□ -0.16
CCDC88A-214ENST00000621814 ZNF720Q7Z2F6 126 aa14.06□□□□□ -0.16
CCDC88A-214ENST00000621814 PALB2Q86YC2 1186 aa14.06□□□□□ -0.16
CCDC88A-214ENST00000621814 TAF1DQ9H5J8 278 aaPredicted RBP14.06□□□□□ -0.16
CCDC88A-214ENST00000621814 ZMYM2Q9UBW7 1377 aa14.06□□□□□ -0.16
CCDC88A-214ENST00000621814 F8VZ95 297 aa14.06□□□□□ -0.16
CCDC88A-214ENST00000621814 K7ENM7 598 aa14.06□□□□□ -0.16
CCDC88A-214ENST00000621814 EBAG9O00559 213 aa14.06□□□□□ -0.16
CCDC88A-214ENST00000621814 NDUFAB1O14561 156 aa14.06□□□□□ -0.16
CCDC88A-214ENST00000621814 BUB1BO60566 1050 aaPredicted RBP14.06□□□□□ -0.16
CCDC88A-214ENST00000621814 PSMD10O75832 226 aa14.06□□□□□ -0.16
CCDC88A-214ENST00000621814 GAP43P17677 238 aa14.06□□□□□ -0.16
CCDC88A-214ENST00000621814 TNFAIP3P21580 790 aa14.06□□□□□ -0.16
CCDC88A-214ENST00000621814 SOX5P35711 763 aa14.06□□□□□ -0.16
CCDC88A-214ENST00000621814 ODF2Q5BJF6 829 aa14.06□□□□□ -0.16
CCDC88A-214ENST00000621814 C10orf76Q5T2E6 689 aa14.06□□□□□ -0.16
CCDC88A-214ENST00000621814 IQCKQ8N0W5 287 aa14.06□□□□□ -0.16
CCDC88A-214ENST00000621814 PIK3R5Q8WYR1 880 aa14.06□□□□□ -0.16
CCDC88A-214ENST00000621814 AGBL1Q96MI9 1066 aa14.06□□□□□ -0.16
CCDC88A-214ENST00000621814 NEUROG2Q9H2A3 272 aa14.06□□□□□ -0.16
CCDC88A-214ENST00000621814 AGPAT3Q9NRZ7 376 aa14.06□□□□□ -0.16
CCDC88A-214ENST00000621814 PPP1R9AQ9ULJ8 1098 aa14.06□□□□□ -0.16
CCDC88A-214ENST00000621814 NR2E1Q9Y466 385 aa14.06□□□□□ -0.16
CCDC88A-214ENST00000621814 GOLGA6L10A6NI86 522 aa14.05□□□□□ -0.16
CCDC88A-214ENST00000621814 IPO5O00410 1097 aaKnown RBP14.05□□□□□ -0.16
CCDC88A-214ENST00000621814 EIF3HO15372 352 aaKnown RBP eCLIP14.05□□□□□ -0.162e-6■■■□□ 14.7
CCDC88A-214ENST00000621814 SLC16A3O15427 465 aaKnown RBP14.05□□□□□ -0.16
CCDC88A-214ENST00000621814 HIP1RO75146 1068 aa14.05□□□□□ -0.16
CCDC88A-214ENST00000621814 FERP16591 822 aa14.05□□□□□ -0.16
CCDC88A-214ENST00000621814 JAM2P57087 298 aa14.05□□□□□ -0.16
CCDC88A-214ENST00000621814 LMBR1Q8WVP7 490 aa14.05□□□□□ -0.16
CCDC88A-214ENST00000621814 CTNNBL1Q8WYA6 563 aaPredicted RBP14.05□□□□□ -0.16
CCDC88A-214ENST00000621814 BUD13Q9BRD0 619 aaKnown RBP eCLIP14.05□□□□□ -0.16
CCDC88A-214ENST00000621814 TMEM39BQ9GZU3 492 aa14.05□□□□□ -0.16
CCDC88A-214ENST00000621814 THAP2Q9H0W7 228 aa14.05□□□□□ -0.16
CCDC88A-214ENST00000621814 OLFML3Q9NRN5 406 aa14.05□□□□□ -0.16
CCDC88A-214ENST00000621814 AMFRQ9UKV5 643 aa14.05□□□□□ -0.16
CCDC88A-214ENST00000621814 IGSF9BQ9UPX0 1349 aa14.05□□□□□ -0.16
CCDC88A-214ENST00000621814 YDJCA8MPS7 323 aa14.05□□□□□ -0.16
CCDC88A-214ENST00000621814 CTNNA1P35221 906 aaKnown RBP14.05□□□□□ -0.16
CCDC88A-214ENST00000621814 DGKZQ13574 1117 aa14.05□□□□□ -0.16
CCDC88A-214ENST00000621814 AADACL2Q6P093 401 aa14.05□□□□□ -0.16
CCDC88A-214ENST00000621814 ZSWIM2Q8NEG5 633 aa14.05□□□□□ -0.16
CCDC88A-214ENST00000621814 PBKQ96KB5 322 aa14.05□□□□□ -0.16
CCDC88A-214ENST00000621814 NACC1Q96RE7 527 aa14.05□□□□□ -0.16
CCDC88A-214ENST00000621814 INTS2Q9H0H0 1204 aaKnown RBP14.05□□□□□ -0.16
CCDC88A-214ENST00000621814 GOPCQ9HD26 462 aa14.05□□□□□ -0.16
CCDC88A-214ENST00000621814 UBE2TQ9NPD8 197 aaPredicted RBP14.05□□□□□ -0.16
CCDC88A-214ENST00000621814 TMOD4Q9NZQ9 345 aa14.05□□□□□ -0.16
CCDC88A-214ENST00000621814 FOXN3O00409 490 aaPredicted RBP14.04□□□□□ -0.16
CCDC88A-214ENST00000621814 GCLMP48507 274 aa14.04□□□□□ -0.16
CCDC88A-214ENST00000621814 SEC24CP53992 1094 aa14.04□□□□□ -0.16
CCDC88A-214ENST00000621814 MYL7Q01449 175 aa14.04□□□□□ -0.16
CCDC88A-214ENST00000621814 BMT2Q1RMZ1 405 aa14.04□□□□□ -0.16
CCDC88A-214ENST00000621814 MCTP2Q6DN12 878 aa14.04□□□□□ -0.16
CCDC88A-214ENST00000621814 MICALL1Q8N3F8 863 aa14.04□□□□□ -0.16
CCDC88A-214ENST00000621814 RUBCNQ92622 972 aa14.04□□□□□ -0.16
CCDC88A-214ENST00000621814 ARHGEF26Q96DR7 871 aa14.04□□□□□ -0.16
CCDC88A-214ENST00000621814 TRIM51Q9BSJ1 452 aa14.04□□□□□ -0.16
CCDC88A-214ENST00000621814 WDR11Q9BZH6 1224 aa14.04□□□□□ -0.16
CCDC88A-214ENST00000621814 ACP6Q9NPH0 428 aa14.04□□□□□ -0.16
CCDC88A-214ENST00000621814 GOLGA8IPA6NC78 632 aa14.04□□□□□ -0.16
CCDC88A-214ENST00000621814 GOLGA8JA6NMD2 632 aa14.04□□□□□ -0.16
CCDC88A-214ENST00000621814 HSD17B3P37058 310 aa14.04□□□□□ -0.16
CCDC88A-214ENST00000621814 PRKCIP41743 596 aa14.04□□□□□ -0.16
CCDC88A-214ENST00000621814 LIG3P49916 1009 aa14.04□□□□□ -0.16
CCDC88A-214ENST00000621814 GRIPAP1Q4V328 841 aa14.04□□□□□ -0.16
CCDC88A-214ENST00000621814 PHLDB3Q6NSJ2 640 aa14.04□□□□□ -0.16
CCDC88A-214ENST00000621814 NT5DC3Q86UY8 548 aa14.04□□□□□ -0.16
CCDC88A-214ENST00000621814 SLC20A1Q8WUM9 679 aa14.04□□□□□ -0.16
CCDC88A-214ENST00000621814 TUFT1Q9NNX1 390 aa14.04□□□□□ -0.16
CCDC88A-214ENST00000621814 GRIN2DO15399 1336 aa14.04□□□□□ -0.16
CCDC88A-214ENST00000621814 SHOX2O60902 331 aaPredicted RBP14.04□□□□□ -0.16
CCDC88A-214ENST00000621814 CYP3A4P08684 503 aa14.04□□□□□ -0.16
CCDC88A-214ENST00000621814 NR1D1P20393 614 aa14.04□□□□□ -0.16
CCDC88A-214ENST00000621814 MKRN4PQ13434 485 aaPredicted RBP14.04□□□□□ -0.16
CCDC88A-214ENST00000621814 LDHDQ86WU2 507 aa14.04□□□□□ -0.16
CCDC88A-214ENST00000621814 WHAMMQ8TF30 809 aa14.04□□□□□ -0.16
CCDC88A-214ENST00000621814 TEKT3Q9BXF9 490 aa14.04□□□□□ -0.16
CCDC88A-214ENST00000621814 PPANQ9NQ55 473 aaKnown RBP14.04□□□□□ -0.16
CCDC88A-214ENST00000621814 FOCADQ5VW36 1801 aa14.03□□□□□ -0.16
CCDC88A-214ENST00000621814 TNFRSF8P28908 595 aa14.03□□□□□ -0.16
CCDC88A-214ENST00000621814 DLGAP5Q15398 846 aa14.03□□□□□ -0.16
CCDC88A-214ENST00000621814 PADI6Q6TGC4 694 aa14.03□□□□□ -0.16
CCDC88A-214ENST00000621814 BTNL9Q6UXG8 535 aa14.03□□□□□ -0.16
CCDC88A-214ENST00000621814 SCFD2Q8WU76 684 aa14.03□□□□□ -0.16
CCDC88A-214ENST00000621814 BBXQ8WY36 941 aaPredicted RBP14.03□□□□□ -0.16
CCDC88A-214ENST00000621814 BORCS6Q96GS4 357 aa14.03□□□□□ -0.16
CCDC88A-214ENST00000621814 STK33Q9BYT3 514 aa14.03□□□□□ -0.16
CCDC88A-214ENST00000621814 ISCUQ9H1K1 167 aa14.03□□□□□ -0.16
CCDC88A-214ENST00000621814 STK24Q9Y6E0 443 aa14.03□□□□□ -0.16
CCDC88A-214ENST00000621814 PIK3CDO00329 1044 aa14.03□□□□□ -0.16
CCDC88A-214ENST00000621814 BACH1O14867 736 aa14.03□□□□□ -0.16
CCDC88A-214ENST00000621814 ENTPD3O75355 529 aa14.03□□□□□ -0.16
CCDC88A-214ENST00000621814 MMP14P50281 582 aa14.03□□□□□ -0.16
CCDC88A-214ENST00000621814 HDLBPQ00341 1268 aaKnown RBP14.03□□□□□ -0.16
CCDC88A-214ENST00000621814 SF3A3Q12874 501 aaKnown RBP eCLIP14.03□□□□□ -0.16
CCDC88A-214ENST00000621814 MIER3Q7Z3K6 550 aa14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms