RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 PPP2R2DQ66LE6 453 aa18.79■□□□□ 0.6
TRIM28-215ENST00000601150 ARL6IP4Q66PJ3 421 aaKnown RBP18.79■□□□□ 0.6
TRIM28-215ENST00000601150 POTEGQ6S5H5 508 aa18.79■□□□□ 0.6
TRIM28-215ENST00000601150 FAM228AQ86W67 206 aa18.79■□□□□ 0.6
TRIM28-215ENST00000601150 RHPN2Q8IUC4 686 aa18.79■□□□□ 0.6
TRIM28-215ENST00000601150 TCP11Q8WWU5 503 aa18.79■□□□□ 0.6
TRIM28-215ENST00000601150 PSPC1Q8WXF1 523 aaKnown RBP18.79■□□□□ 0.6
TRIM28-215ENST00000601150 TOP1MTQ969P6 601 aa18.79■□□□□ 0.6
TRIM28-215ENST00000601150 ZNF668Q96K58 619 aaPredicted RBP18.79■□□□□ 0.6
TRIM28-215ENST00000601150 RAD9AQ99638 391 aa18.79■□□□□ 0.6
TRIM28-215ENST00000601150 MTRQ99707 1265 aa18.79■□□□□ 0.6
TRIM28-215ENST00000601150 BMP2KQ9NSY1 1161 aaPredicted RBP18.79■□□□□ 0.6
TRIM28-215ENST00000601150 DBR1Q9UK59 544 aaKnown RBP18.79■□□□□ 0.6
TRIM28-215ENST00000601150 ST3GAL5Q9UNP4 418 aa18.79■□□□□ 0.6
TRIM28-215ENST00000601150 MTMR6Q9Y217 621 aa18.79■□□□□ 0.6
TRIM28-215ENST00000601150 SZT2Q5T011 3432 aa18.79■□□□□ 0.6
TRIM28-215ENST00000601150 A0A087WWV3 80 aa18.78■□□□□ 0.6
TRIM28-215ENST00000601150 CA3P07451 260 aa18.78■□□□□ 0.6
TRIM28-215ENST00000601150 DARSP14868 501 aaKnown RBP18.78■□□□□ 0.6
TRIM28-215ENST00000601150 RTN4RL1Q86UN2 441 aaPredicted RBP18.78■□□□□ 0.6
TRIM28-215ENST00000601150 ZNF410Q86VK4 478 aa18.78■□□□□ 0.6
TRIM28-215ENST00000601150 SNX29Q8TEQ0 813 aa18.78■□□□□ 0.6
TRIM28-215ENST00000601150 LINC01599Q8WXQ3 324 aa18.78■□□□□ 0.6
TRIM28-215ENST00000601150 TMEM143Q96AN5 459 aa18.78■□□□□ 0.6
TRIM28-215ENST00000601150 GCOM2Q9BZD3 368 aaPredicted RBP18.78■□□□□ 0.6
TRIM28-215ENST00000601150 TMX1Q9H3N1 280 aa18.78■□□□□ 0.6
TRIM28-215ENST00000601150 INSL6Q9Y581 213 aa18.78■□□□□ 0.6
TRIM28-215ENST00000601150 COL4A3BPQ9Y5P4 624 aa18.78■□□□□ 0.6
TRIM28-215ENST00000601150 A0A087WZ62 844 aa18.77■□□□□ 0.6
TRIM28-215ENST00000601150 DGAT1O75907 488 aa18.77■□□□□ 0.6
TRIM28-215ENST00000601150 UPP2O95045 317 aa18.77■□□□□ 0.6
TRIM28-215ENST00000601150 KRT79Q5XKE5 535 aa18.77■□□□□ 0.6
TRIM28-215ENST00000601150 PRPF31Q8WWY3 499 aaKnown RBP18.77■□□□□ 0.6
TRIM28-215ENST00000601150 NLRP4Q96MN2 994 aa18.77■□□□□ 0.6
TRIM28-215ENST00000601150 GUCD1Q96NT3 240 aa18.77■□□□□ 0.6
TRIM28-215ENST00000601150 FDXACB1Q9BRP7 624 aaPredicted RBP18.77■□□□□ 0.6
TRIM28-215ENST00000601150 TSPYL2Q9H2G4 693 aaPredicted RBP18.77■□□□□ 0.6
TRIM28-215ENST00000601150 ZSCAN16Q9H4T2 348 aaPredicted RBP18.77■□□□□ 0.6
TRIM28-215ENST00000601150 ATP6V0A4Q9HBG4 840 aa18.77■□□□□ 0.6
TRIM28-215ENST00000601150 DENND3A2RUS2 1198 aa18.76■□□□□ 0.59
TRIM28-215ENST00000601150 VWA3AA6NCI4 1184 aa18.76■□□□□ 0.59
TRIM28-215ENST00000601150 PP2D1A8MPX8 630 aa18.76■□□□□ 0.59
TRIM28-215ENST00000601150 ASAP2O43150 1006 aa18.76■□□□□ 0.59
TRIM28-215ENST00000601150 PDIA4P13667 645 aaKnown RBP18.76■□□□□ 0.59
TRIM28-215ENST00000601150 HTRA4P83105 476 aaPredicted RBP18.76■□□□□ 0.59
TRIM28-215ENST00000601150 LAMTOR4Q0VGL1 99 aa18.76■□□□□ 0.59
TRIM28-215ENST00000601150 SF3A1Q15459 793 aaKnown RBP18.76■□□□□ 0.59
TRIM28-215ENST00000601150 ECM1Q16610 540 aa18.76■□□□□ 0.59
TRIM28-215ENST00000601150 KSR1Q8IVT5 923 aa18.76■□□□□ 0.59
TRIM28-215ENST00000601150 CDX2Q99626 313 aaPredicted RBP18.76■□□□□ 0.59
TRIM28-215ENST00000601150 INO80BQ9C086 356 aaPredicted RBP18.76■□□□□ 0.59
TRIM28-215ENST00000601150 XPNPEP1Q9NQW7 623 aa18.76■□□□□ 0.59
TRIM28-215ENST00000601150 KIAA1024Q9UPX6 916 aa18.76■□□□□ 0.59
TRIM28-215ENST00000601150 COL4A6Q14031 1691 aa18.76■□□□□ 0.59
TRIM28-215ENST00000601150 LCHNA4D1U4 455 aa18.75■□□□□ 0.59
TRIM28-215ENST00000601150 ARHGEF35A5YM69 484 aa18.75■□□□□ 0.59
TRIM28-215ENST00000601150 MGEA5O60502 916 aa18.75■□□□□ 0.59
TRIM28-215ENST00000601150 USO1O60763 962 aaKnown RBP18.75■□□□□ 0.59
TRIM28-215ENST00000601150 TAP1Q03518 808 aa18.75■□□□□ 0.59
TRIM28-215ENST00000601150 MXD4Q14582 209 aaPredicted RBP18.75■□□□□ 0.59
TRIM28-215ENST00000601150 GRIN2CQ14957 1233 aa18.75■□□□□ 0.59
TRIM28-215ENST00000601150 YME1L1Q96TA2 773 aa18.75■□□□□ 0.59
TRIM28-215ENST00000601150 ADAM2Q99965 735 aa18.75■□□□□ 0.59
TRIM28-215ENST00000601150 RGS18Q9NS28 235 aa18.75■□□□□ 0.59
TRIM28-215ENST00000601150 C1orf112Q9NSG2 853 aa18.75■□□□□ 0.59
TRIM28-215ENST00000601150 DDX19AQ9NUU7 478 aaKnown RBP18.75■□□□□ 0.59
TRIM28-215ENST00000601150 NLRC5Q86WI3 1866 aa18.75■□□□□ 0.59
TRIM28-215ENST00000601150 RALGAPA2Q2PPJ7 1873 aa18.74■□□□□ 0.59
TRIM28-215ENST00000601150 STAG3L1P0CL83 205 aa18.74■□□□□ 0.59
TRIM28-215ENST00000601150 SRGAP2CP0DJJ0 459 aa18.74■□□□□ 0.59
TRIM28-215ENST00000601150 CDC25AP30304 524 aa18.74■□□□□ 0.59
TRIM28-215ENST00000601150 DSC3Q14574 896 aa18.74■□□□□ 0.59
TRIM28-215ENST00000601150 FAM173BQ6P4H8 233 aa18.74■□□□□ 0.59
TRIM28-215ENST00000601150 NPAS4Q8IUM7 802 aa18.74■□□□□ 0.59
TRIM28-215ENST00000601150 MCPH1Q8NEM0 835 aa18.74■□□□□ 0.59
TRIM28-215ENST00000601150 SP7Q8TDD2 431 aaPredicted RBP18.74■□□□□ 0.59
TRIM28-215ENST00000601150 MMTAG2Q9BU76 263 aaKnown RBP18.74■□□□□ 0.59
TRIM28-215ENST00000601150 RNF216Q9NWF9 866 aaPredicted RBP18.74■□□□□ 0.59
TRIM28-215ENST00000601150 CLIC4Q9Y696 253 aa18.74■□□□□ 0.59
TRIM28-215ENST00000601150 CHD9Q3L8U1 2897 aa18.73■□□□□ 0.59
TRIM28-215ENST00000601150 CSDE1O75534 798 aaKnown RBP18.73■□□□□ 0.59
TRIM28-215ENST00000601150 ARHGEF15O94989 841 aa18.73■□□□□ 0.59
TRIM28-215ENST00000601150 ZSCAN20P17040 1043 aaPredicted RBP18.73■□□□□ 0.59
TRIM28-215ENST00000601150 FGFR4P22455 802 aa18.73■□□□□ 0.59
TRIM28-215ENST00000601150 SFPQP23246 707 aaKnown RBP eCLIP18.73■□□□□ 0.59
TRIM28-215ENST00000601150 ARL2P36404 184 aa18.73■□□□□ 0.59
TRIM28-215ENST00000601150 SARSP49591 514 aaKnown RBP18.73■□□□□ 0.59
TRIM28-215ENST00000601150 TFDP1Q14186 410 aa18.73■□□□□ 0.59
TRIM28-215ENST00000601150 PADI6Q6TGC4 694 aa18.73■□□□□ 0.59
TRIM28-215ENST00000601150 SLC24A5Q71RS6 500 aa18.73■□□□□ 0.59
TRIM28-215ENST00000601150 RNF149Q8NC42 400 aa18.73■□□□□ 0.59
TRIM28-215ENST00000601150 SPRYD3Q8NCJ5 442 aa18.73■□□□□ 0.59
TRIM28-215ENST00000601150 MYLIPQ8WY64 445 aa18.73■□□□□ 0.59
TRIM28-215ENST00000601150 AK8Q96MA6 479 aa18.73■□□□□ 0.59
TRIM28-215ENST00000601150 POLR3FQ9H1D9 316 aaPredicted RBP18.73■□□□□ 0.59
TRIM28-215ENST00000601150 PRDM12Q9H4Q4 367 aa18.73■□□□□ 0.59
TRIM28-215ENST00000601150 IFT122Q9HBG6 1241 aa18.73■□□□□ 0.59
TRIM28-215ENST00000601150 LRFN2Q9ULH4 789 aa18.73■□□□□ 0.59
TRIM28-215ENST00000601150 DNM3Q9UQ16 869 aa18.73■□□□□ 0.59
TRIM28-215ENST00000601150 STXBP5LQ9Y2K9 1186 aa18.73■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms