RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 SLC39A5Q6ZMH5 540 aa15.9■□□□□ 0.14
UPF1-211ENST00000600868 MAEAQ7L5Y9 396 aa15.9■□□□□ 0.14
UPF1-211ENST00000600868 NECAB2Q7Z6G3 386 aa15.9■□□□□ 0.14
UPF1-211ENST00000600868 CCDC65Q8IXS2 484 aa15.9■□□□□ 0.14
UPF1-211ENST00000600868 DAW1Q8N136 415 aa15.9■□□□□ 0.14
UPF1-211ENST00000600868 LRRC71Q8N4P6 559 aa15.9■□□□□ 0.14
UPF1-211ENST00000600868 SMARCE1Q969G3 411 aa15.9■□□□□ 0.14
UPF1-211ENST00000600868 TMEM143Q96AN5 459 aa15.9■□□□□ 0.14
UPF1-211ENST00000600868 ZBTB10Q96DT7 871 aa15.9■□□□□ 0.14
UPF1-211ENST00000600868 ABHD8Q96I13 439 aa15.9■□□□□ 0.14
UPF1-211ENST00000600868 PAWRQ96IZ0 340 aaKnown RBP15.9■□□□□ 0.14
UPF1-211ENST00000600868 GSDMAQ96QA5 445 aa15.9■□□□□ 0.14
UPF1-211ENST00000600868 POLR3FQ9H1D9 316 aaPredicted RBP15.9■□□□□ 0.14
UPF1-211ENST00000600868 C17orf75Q9HAS0 396 aa15.9■□□□□ 0.14
UPF1-211ENST00000600868 GPRC5CQ9NQ84 441 aa15.9■□□□□ 0.14
UPF1-211ENST00000600868 PANK4Q9NVE7 773 aa15.9■□□□□ 0.14
UPF1-211ENST00000600868 KIAA1468Q9P260 1216 aa15.9■□□□□ 0.14
UPF1-211ENST00000600868 COL4A3BPQ9Y5P4 624 aa15.9■□□□□ 0.14
UPF1-211ENST00000600868 MROH7Q68CQ1 1323 aa15.9■□□□□ 0.14
UPF1-211ENST00000600868 TRIP12Q14669 1992 aaPredicted RBP15.89■□□□□ 0.13
UPF1-211ENST00000600868 RSPH10B2B2RC85 870 aa15.89■□□□□ 0.13
UPF1-211ENST00000600868 RSPH10BP0C881 870 aa15.89■□□□□ 0.13
UPF1-211ENST00000600868 GAP43P17677 238 aa15.89■□□□□ 0.13
UPF1-211ENST00000600868 EN2P19622 333 aaPredicted RBP15.89■□□□□ 0.13
UPF1-211ENST00000600868 CLCN3P51790 818 aa15.89■□□□□ 0.13
UPF1-211ENST00000600868 SOX10P56693 466 aa15.89■□□□□ 0.13
UPF1-211ENST00000600868 CACNB1Q02641 598 aaPredicted RBP15.89■□□□□ 0.13
UPF1-211ENST00000600868 EHHADHQ08426 723 aa15.89■□□□□ 0.13
UPF1-211ENST00000600868 DRP2Q13474 957 aa15.89■□□□□ 0.13
UPF1-211ENST00000600868 KCNB1Q14721 858 aa15.89■□□□□ 0.13
UPF1-211ENST00000600868 PTGISQ16647 500 aa15.89■□□□□ 0.13
UPF1-211ENST00000600868 UBE2Q1Q7Z7E8 422 aa15.89■□□□□ 0.13
UPF1-211ENST00000600868 SERINC5Q86VE9 423 aa15.89■□□□□ 0.13
UPF1-211ENST00000600868 KIAA0319LQ8IZA0 1049 aa15.89■□□□□ 0.13
UPF1-211ENST00000600868 PSPC1Q8WXF1 523 aaKnown RBP15.89■□□□□ 0.13
UPF1-211ENST00000600868 CCDC47Q96A33 483 aaKnown RBP15.89■□□□□ 0.13
UPF1-211ENST00000600868 PARVGQ9HBI0 331 aa15.89■□□□□ 0.13
UPF1-211ENST00000600868 POLD4Q9HCU8 107 aa15.89■□□□□ 0.13
UPF1-211ENST00000600868 RMND1Q9NWS8 449 aa15.89■□□□□ 0.13
UPF1-211ENST00000600868 SUCLA2Q9P2R7 463 aaPredicted RBP15.89■□□□□ 0.13
UPF1-211ENST00000600868 SEL1LQ9UBV2 794 aa15.89■□□□□ 0.13
UPF1-211ENST00000600868 KCNG1Q9UIX4 513 aa15.89■□□□□ 0.13
UPF1-211ENST00000600868 EVPLQ92817 2033 aa15.89■□□□□ 0.13
UPF1-211ENST00000600868 ASAP2O43150 1006 aa15.88■□□□□ 0.13
UPF1-211ENST00000600868 B4GALT4O60513 344 aa15.88■□□□□ 0.13
UPF1-211ENST00000600868 LETM1O95202 739 aaPredicted RBP15.88■□□□□ 0.13
UPF1-211ENST00000600868 PLS3P13797 630 aa15.88■□□□□ 0.13
UPF1-211ENST00000600868 CDC42EP1Q00587 391 aa15.88■□□□□ 0.13
UPF1-211ENST00000600868 COASYQ13057 564 aa15.88■□□□□ 0.13
UPF1-211ENST00000600868 PTK7Q13308 1070 aa15.88■□□□□ 0.13
UPF1-211ENST00000600868 MXD4Q14582 209 aaPredicted RBP15.88■□□□□ 0.13
UPF1-211ENST00000600868 KMT5BQ4FZB7 885 aa15.88■□□□□ 0.13
UPF1-211ENST00000600868 RUFY4Q6ZNE9 571 aa15.88■□□□□ 0.13
UPF1-211ENST00000600868 ANKRD33Q7Z3H0 272 aa15.88■□□□□ 0.13
UPF1-211ENST00000600868 RPAINQ86UA6 219 aa15.88■□□□□ 0.13
UPF1-211ENST00000600868 FAM126BQ8IXS8 530 aa15.88■□□□□ 0.13
UPF1-211ENST00000600868 ZNF710Q8N1W2 664 aa15.88■□□□□ 0.13
UPF1-211ENST00000600868 NME8Q8N427 588 aa15.88■□□□□ 0.13
UPF1-211ENST00000600868 PRPF31Q8WWY3 499 aaKnown RBP15.88■□□□□ 0.13
UPF1-211ENST00000600868 ERCC4Q92889 916 aaPredicted RBP15.88■□□□□ 0.13
UPF1-211ENST00000600868 TOX2Q96NM4 488 aa15.88■□□□□ 0.13
UPF1-211ENST00000600868 CTAGE1Q96RT6 745 aa15.88■□□□□ 0.13
UPF1-211ENST00000600868 MAP7D2Q96T17 732 aa15.88■□□□□ 0.13
UPF1-211ENST00000600868 TRMT13Q9NUP7 481 aaKnown RBP15.88■□□□□ 0.13
UPF1-211ENST00000600868 LARSQ9P2J5 1176 aaKnown RBP15.88■□□□□ 0.13
UPF1-211ENST00000600868 SFI1A8K8P3 1242 aa15.87■□□□□ 0.13
UPF1-211ENST00000600868 RHOBTB3O94955 611 aa15.87■□□□□ 0.13
UPF1-211ENST00000600868 CD4P01730 458 aa15.87■□□□□ 0.13
UPF1-211ENST00000600868 GLRA2P23416 452 aa15.87■□□□□ 0.13
UPF1-211ENST00000600868 PSMD2Q13200 908 aa15.87■□□□□ 0.13
UPF1-211ENST00000600868 DMP1Q13316 513 aaPredicted RBP15.87■□□□□ 0.13
UPF1-211ENST00000600868 PPP2R5AQ15172 486 aa15.87■□□□□ 0.13
UPF1-211ENST00000600868 HERC4Q5GLZ8 1057 aaPredicted RBP15.87■□□□□ 0.13
UPF1-211ENST00000600868 ODR4Q5SWX8 454 aa15.87■□□□□ 0.13
UPF1-211ENST00000600868 MYCT1Q8N699 235 aa15.87■□□□□ 0.13
UPF1-211ENST00000600868 ASAP3Q8TDY4 903 aa15.87■□□□□ 0.13
UPF1-211ENST00000600868 SPIRE2Q8WWL2 714 aa15.87■□□□□ 0.13
UPF1-211ENST00000600868 IFT74Q96LB3 600 aa15.87■□□□□ 0.13
UPF1-211ENST00000600868 NTPCRQ9BSD7 190 aaKnown RBP15.87■□□□□ 0.13
UPF1-211ENST00000600868 GTPBP4Q9BZE4 634 aaKnown RBP15.87■□□□□ 0.13
UPF1-211ENST00000600868 FAM49AQ9H0Q0 323 aaPredicted RBP15.87■□□□□ 0.13
UPF1-211ENST00000600868 TRPV6Q9H1D0 765 aa15.87■□□□□ 0.13
UPF1-211ENST00000600868 ZHX3Q9H4I2 956 aa15.87■□□□□ 0.13
UPF1-211ENST00000600868 OLFML3Q9NRN5 406 aa15.87■□□□□ 0.13
UPF1-211ENST00000600868 EXOC1Q9NV70 894 aa15.87■□□□□ 0.13
UPF1-211ENST00000600868 NOD1Q9Y239 953 aa15.87■□□□□ 0.13
UPF1-211ENST00000600868 AKT3Q9Y243 479 aa15.87■□□□□ 0.13
UPF1-211ENST00000600868 BRCA2P51587 3418 aa15.87■□□□□ 0.13
UPF1-211ENST00000600868 MYH11P35749 1972 aa15.87■□□□□ 0.13
UPF1-211ENST00000600868 MAPTP10636 758 aaKnown RBP15.86■□□□□ 0.13
UPF1-211ENST00000600868 NAMPTP43490 491 aa15.86■□□□□ 0.13
UPF1-211ENST00000600868 ATN1P54259 1190 aaPredicted RBP15.86■□□□□ 0.13
UPF1-211ENST00000600868 POU5F1BQ06416 359 aa15.86■□□□□ 0.13
UPF1-211ENST00000600868 LAMTOR4Q0VGL1 99 aa15.86■□□□□ 0.13
UPF1-211ENST00000600868 RSPH3Q86UC2 560 aa15.86■□□□□ 0.13
UPF1-211ENST00000600868 SFR1Q86XK3 245 aa15.86■□□□□ 0.13
UPF1-211ENST00000600868 RHPN2Q8IUC4 686 aa15.86■□□□□ 0.13
UPF1-211ENST00000600868 TRIML1Q8N9V2 468 aa15.86■□□□□ 0.13
UPF1-211ENST00000600868 SLC17A8Q8NDX2 589 aa15.86■□□□□ 0.13
UPF1-211ENST00000600868 DNAJB3Q8WWF6 145 aa15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms