RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 DSC3Q14574 896 aa18.03■□□□□ 0.48
TRIM28-213ENST00000598355 TMEM266Q2M3C6 531 aa18.03■□□□□ 0.48
TRIM28-213ENST00000598355 OTUD6AQ7L8S5 288 aa18.03■□□□□ 0.48
TRIM28-213ENST00000598355 BRAPQ7Z569 592 aa18.03■□□□□ 0.48
TRIM28-213ENST00000598355 ZNF410Q86VK4 478 aa18.03■□□□□ 0.48
TRIM28-213ENST00000598355 CATSPER3Q86XQ3 398 aa18.03■□□□□ 0.48
TRIM28-213ENST00000598355 TPH2Q8IWU9 490 aa18.03■□□□□ 0.48
TRIM28-213ENST00000598355 SLC7A3Q8WY07 619 aa18.03■□□□□ 0.48
TRIM28-213ENST00000598355 MYLIPQ8WY64 445 aa18.03■□□□□ 0.48
TRIM28-213ENST00000598355 PPP1R16BQ96T49 567 aa18.03■□□□□ 0.48
TRIM28-213ENST00000598355 XPNPEP1Q9NQW7 623 aa18.03■□□□□ 0.48
TRIM28-213ENST00000598355 ST3GAL5Q9UNP4 418 aa18.03■□□□□ 0.48
TRIM28-213ENST00000598355 GINS2Q9Y248 185 aa18.03■□□□□ 0.48
TRIM28-213ENST00000598355 REV3LO60673 3130 aa18.03■□□□□ 0.48
TRIM28-213ENST00000598355 LINC01553A4QN01 128 aa18.02■□□□□ 0.48
TRIM28-213ENST00000598355 GPR182O15218 404 aa18.02■□□□□ 0.48
TRIM28-213ENST00000598355 POLGP54098 1239 aaPredicted RBP18.02■□□□□ 0.48
TRIM28-213ENST00000598355 PDIA5Q14554 519 aa18.02■□□□□ 0.48
TRIM28-213ENST00000598355 EMC2Q15006 297 aa18.02■□□□□ 0.48
TRIM28-213ENST00000598355 SPRED2Q7Z698 418 aa18.02■□□□□ 0.48
TRIM28-213ENST00000598355 ZNF689Q96CS4 500 aaPredicted RBP18.02■□□□□ 0.48
TRIM28-213ENST00000598355 ZBED2Q9BTP6 218 aa18.02■□□□□ 0.48
TRIM28-213ENST00000598355 LINC00271P0C7V0 271 aa18.01■□□□□ 0.47
TRIM28-213ENST00000598355 DNM2P50570 870 aa18.01■□□□□ 0.47
TRIM28-213ENST00000598355 IL17AQ16552 155 aa18.01■□□□□ 0.47
TRIM28-213ENST00000598355 XKR9Q5GH70 373 aa18.01■□□□□ 0.47
TRIM28-213ENST00000598355 HAUS3Q68CZ6 603 aa18.01■□□□□ 0.47
TRIM28-213ENST00000598355 PRDM12Q9H4Q4 367 aa18.01■□□□□ 0.47
TRIM28-213ENST00000598355 RGS18Q9NS28 235 aa18.01■□□□□ 0.47
TRIM28-213ENST00000598355 SUCLA2Q9P2R7 463 aaPredicted RBP18.01■□□□□ 0.47
TRIM28-213ENST00000598355 DBR1Q9UK59 544 aaKnown RBP18.01■□□□□ 0.47
TRIM28-213ENST00000598355 EPOPA6NHQ4 379 aa18■□□□□ 0.47
TRIM28-213ENST00000598355 C9IYK1 514 aa18■□□□□ 0.47
TRIM28-213ENST00000598355 DGAT1O75907 488 aa18■□□□□ 0.47
TRIM28-213ENST00000598355 SYT1P21579 422 aa18■□□□□ 0.47
TRIM28-213ENST00000598355 SARSP49591 514 aaKnown RBP18■□□□□ 0.47
TRIM28-213ENST00000598355 ERVK-21P61565 698 aa18■□□□□ 0.47
TRIM28-213ENST00000598355 NFX1Q12986 1120 aaKnown RBP18■□□□□ 0.47
TRIM28-213ENST00000598355 ADGRE1Q14246 886 aa18■□□□□ 0.47
TRIM28-213ENST00000598355 ARL6IP4Q66PJ3 421 aaKnown RBP18■□□□□ 0.47
TRIM28-213ENST00000598355 FAM117BQ6P1L5 589 aa18■□□□□ 0.47
TRIM28-213ENST00000598355 POTEGQ6S5H5 508 aa18■□□□□ 0.47
TRIM28-213ENST00000598355 NPAS4Q8IUM7 802 aa18■□□□□ 0.47
TRIM28-213ENST00000598355 ERMNQ8TAM6 284 aa18■□□□□ 0.47
TRIM28-213ENST00000598355 PSPC1Q8WXF1 523 aaKnown RBP18■□□□□ 0.47
TRIM28-213ENST00000598355 IFT122Q9HBG6 1241 aa18■□□□□ 0.47
TRIM28-213ENST00000598355 C1orf112Q9NSG2 853 aa18■□□□□ 0.47
TRIM28-213ENST00000598355 COL4A3BPQ9Y5P4 624 aa18■□□□□ 0.47
TRIM28-213ENST00000598355 ADGRA3Q8IWK6 1321 aa17.99■□□□□ 0.47
TRIM28-213ENST00000598355 MYH11P35749 1972 aa17.99■□□□□ 0.47
TRIM28-213ENST00000598355 A0A087WZ62 844 aa17.99■□□□□ 0.47
TRIM28-213ENST00000598355 DGKIO75912 1065 aa17.99■□□□□ 0.47
TRIM28-213ENST00000598355 POU3F3P20264 500 aaPredicted RBP17.99■□□□□ 0.47
TRIM28-213ENST00000598355 RESTQ13127 1097 aa17.99■□□□□ 0.47
TRIM28-213ENST00000598355 FERMT3Q86UX7 667 aa17.99■□□□□ 0.47
TRIM28-213ENST00000598355 RHPN2Q8IUC4 686 aa17.99■□□□□ 0.47
TRIM28-213ENST00000598355 PIGOQ8TEQ8 1089 aa17.99■□□□□ 0.47
TRIM28-213ENST00000598355 TCP11Q8WWU5 503 aa17.99■□□□□ 0.47
TRIM28-213ENST00000598355 NLRP7Q8WX94 980 aa17.99■□□□□ 0.47
TRIM28-213ENST00000598355 ZNF668Q96K58 619 aaPredicted RBP17.99■□□□□ 0.47
TRIM28-213ENST00000598355 YME1L1Q96TA2 773 aa17.99■□□□□ 0.47
TRIM28-213ENST00000598355 MTRQ99707 1265 aa17.99■□□□□ 0.47
TRIM28-213ENST00000598355 ADAM2Q99965 735 aa17.99■□□□□ 0.47
TRIM28-213ENST00000598355 FDXACB1Q9BRP7 624 aaPredicted RBP17.99■□□□□ 0.47
TRIM28-213ENST00000598355 RAB34Q9BZG1 259 aa17.99■□□□□ 0.47
TRIM28-213ENST00000598355 LRWD1Q9UFC0 647 aa17.99■□□□□ 0.47
TRIM28-213ENST00000598355 STK24Q9Y6E0 443 aa17.99■□□□□ 0.47
TRIM28-213ENST00000598355 VPS37CA5D8V6 355 aaPredicted RBP17.98■□□□□ 0.47
TRIM28-213ENST00000598355 FOSL2P15408 326 aa17.98■□□□□ 0.47
TRIM28-213ENST00000598355 FAM189BP81408 668 aa17.98■□□□□ 0.47
TRIM28-213ENST00000598355 ECM1Q16610 540 aa17.98■□□□□ 0.47
TRIM28-213ENST00000598355 SLC24A5Q71RS6 500 aa17.98■□□□□ 0.47
TRIM28-213ENST00000598355 IFNLR1Q8IU57 520 aaPredicted RBP17.98■□□□□ 0.47
TRIM28-213ENST00000598355 KSR1Q8IVT5 923 aa17.98■□□□□ 0.47
TRIM28-213ENST00000598355 TMEM143Q96AN5 459 aa17.98■□□□□ 0.47
TRIM28-213ENST00000598355 NACC1Q96RE7 527 aa17.98■□□□□ 0.47
TRIM28-213ENST00000598355 TGS1Q96RS0 853 aaKnown RBP17.98■□□□□ 0.47
TRIM28-213ENST00000598355 MMTAG2Q9BU76 263 aaKnown RBP17.98■□□□□ 0.47
TRIM28-213ENST00000598355 TRAIPQ9BWF2 469 aa17.98■□□□□ 0.47
TRIM28-213ENST00000598355 GCOM2Q9BZD3 368 aaPredicted RBP17.98■□□□□ 0.47
TRIM28-213ENST00000598355 ATP6V0A4Q9HBG4 840 aa17.98■□□□□ 0.47
TRIM28-213ENST00000598355 MTMR6Q9Y217 621 aa17.98■□□□□ 0.47
TRIM28-213ENST00000598355 UNC80Q8N2C7 3258 aa17.98■□□□□ 0.47
TRIM28-213ENST00000598355 ASAP2O43150 1006 aa17.97■□□□□ 0.47
TRIM28-213ENST00000598355 LPXNO60711 386 aa17.97■□□□□ 0.47
TRIM28-213ENST00000598355 UPP2O95045 317 aa17.97■□□□□ 0.47
TRIM28-213ENST00000598355 BMP15O95972 392 aa17.97■□□□□ 0.47
TRIM28-213ENST00000598355 ARL2P36404 184 aa17.97■□□□□ 0.47
TRIM28-213ENST00000598355 POU5F1BQ06416 359 aa17.97■□□□□ 0.47
TRIM28-213ENST00000598355 LAMTOR4Q0VGL1 99 aa17.97■□□□□ 0.47
TRIM28-213ENST00000598355 HYIQ5T013 277 aa17.97■□□□□ 0.47
TRIM28-213ENST00000598355 DTHD1Q6ZMT9 781 aa17.97■□□□□ 0.47
TRIM28-213ENST00000598355 PRPF31Q8WWY3 499 aaKnown RBP17.97■□□□□ 0.47
TRIM28-213ENST00000598355 CLP1Q92989 425 aaKnown RBP17.97■□□□□ 0.47
TRIM28-213ENST00000598355 NLRP4Q96MN2 994 aa17.97■□□□□ 0.47
TRIM28-213ENST00000598355 SAMD11Q96NU1 681 aa17.97■□□□□ 0.47
TRIM28-213ENST00000598355 GAS2L1Q99501 681 aaPredicted RBP17.97■□□□□ 0.47
TRIM28-213ENST00000598355 ELAC1Q9H777 363 aaKnown RBP17.97■□□□□ 0.47
TRIM28-213ENST00000598355 BMP2KQ9NSY1 1161 aaPredicted RBP17.97■□□□□ 0.47
TRIM28-213ENST00000598355 PLXNA4Q9HCM2 1894 aa17.97■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms