RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 GNL2Q13823 731 aaKnown RBP17.1■□□□□ 0.33
TRIM28-203ENST00000593582 OTUD6AQ7L8S5 288 aa17.1■□□□□ 0.33
TRIM28-203ENST00000593582 C4orf19Q8IY42 314 aa17.1■□□□□ 0.33
TRIM28-203ENST00000593582 CMTR2Q8IYT2 770 aaKnown RBP17.1■□□□□ 0.33
TRIM28-203ENST00000593582 SLC7A3Q8WY07 619 aa17.1■□□□□ 0.33
TRIM28-203ENST00000593582 MRPL38Q96DV4 380 aaKnown RBP17.1■□□□□ 0.33
TRIM28-203ENST00000593582 CEP170P1Q96L14 293 aa17.1■□□□□ 0.33
TRIM28-203ENST00000593582 ASB2Q96Q27 587 aa17.1■□□□□ 0.33
TRIM28-203ENST00000593582 C11orf84Q9BUA3 381 aaPredicted RBP17.1■□□□□ 0.33
TRIM28-203ENST00000593582 FOXP1Q9H334 677 aaPredicted RBP17.1■□□□□ 0.33
TRIM28-203ENST00000593582 TTC12Q9H892 705 aaPredicted RBP17.1■□□□□ 0.33
TRIM28-203ENST00000593582 RGL1Q9NZL6 768 aa17.1■□□□□ 0.33
TRIM28-203ENST00000593582 SUCLA2Q9P2R7 463 aaPredicted RBP17.1■□□□□ 0.33
TRIM28-203ENST00000593582 PPME1Q9Y570 386 aa17.1■□□□□ 0.33
TRIM28-203ENST00000593582 COL4A4P53420 1690 aaPredicted RBP17.1■□□□□ 0.33
TRIM28-203ENST00000593582 C9IYK1 514 aa17.09■□□□□ 0.33
TRIM28-203ENST00000593582 C5orf67F2Z3F1 127 aa17.09■□□□□ 0.33
TRIM28-203ENST00000593582 ZSCAN20P17040 1043 aaPredicted RBP17.09■□□□□ 0.33
TRIM28-203ENST00000593582 YWHABP31946 246 aaKnown RBP17.09■□□□□ 0.33
TRIM28-203ENST00000593582 MCM7P33993 719 aa17.09■□□□□ 0.33
TRIM28-203ENST00000593582 TXKP42681 527 aa17.09■□□□□ 0.33
TRIM28-203ENST00000593582 POLGP54098 1239 aaPredicted RBP17.09■□□□□ 0.33
TRIM28-203ENST00000593582 NPEPPSP55786 919 aa17.09■□□□□ 0.33
TRIM28-203ENST00000593582 CYP4A11Q02928 519 aa17.09■□□□□ 0.33
TRIM28-203ENST00000593582 AAK1Q2M2I8 961 aa17.09■□□□□ 0.33
TRIM28-203ENST00000593582 TPH2Q8IWU9 490 aa17.09■□□□□ 0.33
TRIM28-203ENST00000593582 DYDC2Q96IM9 177 aa17.09■□□□□ 0.33
TRIM28-203ENST00000593582 PLVAPQ9BX97 442 aa17.09■□□□□ 0.33
TRIM28-203ENST00000593582 GCOM2Q9BZD3 368 aaPredicted RBP17.09■□□□□ 0.33
TRIM28-203ENST00000593582 WRAP73Q9P2S5 460 aaPredicted RBP17.09■□□□□ 0.33
TRIM28-203ENST00000593582 COG5Q9UP83 839 aa17.09■□□□□ 0.33
TRIM28-203ENST00000593582 WDR81Q562E7 1941 aa17.09■□□□□ 0.33
TRIM28-203ENST00000593582 MUC3AQ02505 3323 aa17.09■□□□□ 0.33
TRIM28-203ENST00000593582 WNT7AO00755 349 aa17.08■□□□□ 0.32
TRIM28-203ENST00000593582 LINC00271P0C7V0 271 aa17.08■□□□□ 0.32
TRIM28-203ENST00000593582 CTTNQ14247 550 aaKnown RBP17.08■□□□□ 0.32
TRIM28-203ENST00000593582 DSC3Q14574 896 aa17.08■□□□□ 0.32
TRIM28-203ENST00000593582 PAN2Q504Q3 1202 aaKnown RBP17.08■□□□□ 0.32
TRIM28-203ENST00000593582 ZNF410Q86VK4 478 aa17.08■□□□□ 0.32
TRIM28-203ENST00000593582 RHPN2Q8IUC4 686 aa17.08■□□□□ 0.32
TRIM28-203ENST00000593582 HLA-CQ95604 372 aa17.08■□□□□ 0.32
TRIM28-203ENST00000593582 MTMR9Q96QG7 549 aa17.08■□□□□ 0.32
TRIM28-203ENST00000593582 EIF2AK1Q9BQI3 630 aaKnown RBP17.08■□□□□ 0.32
TRIM28-203ENST00000593582 ATP6V0A4Q9HBG4 840 aa17.08■□□□□ 0.32
TRIM28-203ENST00000593582 KIF3AQ9Y496 699 aa17.08■□□□□ 0.32
TRIM28-203ENST00000593582 MRPL42Q9Y6G3 142 aaKnown RBP17.08■□□□□ 0.32
TRIM28-203ENST00000593582 LOXHD1Q8IVV2 1947 aa17.08■□□□□ 0.32
TRIM28-203ENST00000593582 CUL9Q8IWT3 2517 aa17.07■□□□□ 0.32
TRIM28-203ENST00000593582 SLITRK3O94933 977 aa17.07■□□□□ 0.32
TRIM28-203ENST00000593582 RFC5P40937 340 aa17.07■□□□□ 0.32
TRIM28-203ENST00000593582 FAM189BP81408 668 aa17.07■□□□□ 0.32
TRIM28-203ENST00000593582 TFF2Q03403 129 aa17.07■□□□□ 0.32
TRIM28-203ENST00000593582 ORC2Q13416 577 aaPredicted RBP17.07■□□□□ 0.32
TRIM28-203ENST00000593582 TIGD5Q53EQ6 642 aa17.07■□□□□ 0.32
TRIM28-203ENST00000593582 XKR9Q5GH70 373 aa17.07■□□□□ 0.32
TRIM28-203ENST00000593582 NOSTRINQ8IVI9 506 aa17.07■□□□□ 0.32
TRIM28-203ENST00000593582 NEK9Q8TD19 979 aa17.07■□□□□ 0.32
TRIM28-203ENST00000593582 NLRP4Q96MN2 994 aa17.07■□□□□ 0.32
TRIM28-203ENST00000593582 HSD17B14Q9BPX1 270 aa17.07■□□□□ 0.32
TRIM28-203ENST00000593582 INO80BQ9C086 356 aaPredicted RBP17.07■□□□□ 0.32
TRIM28-203ENST00000593582 DHX33Q9H6R0 707 aaKnown RBP17.07■□□□□ 0.32
TRIM28-203ENST00000593582 ELAC1Q9H777 363 aaKnown RBP17.07■□□□□ 0.32
TRIM28-203ENST00000593582 TMEM161AQ9NX61 479 aa17.07■□□□□ 0.32
TRIM28-203ENST00000593582 A0A087WZ62 844 aa17.06■□□□□ 0.32
TRIM28-203ENST00000593582 GAS2O43903 313 aaKnown RBP17.06■□□□□ 0.32
TRIM28-203ENST00000593582 CSDE1O75534 798 aaKnown RBP17.06■□□□□ 0.32
TRIM28-203ENST00000593582 SFPQP23246 707 aaKnown RBP eCLIP17.06■□□□□ 0.32
TRIM28-203ENST00000593582 GATMP50440 423 aa17.06■□□□□ 0.32
TRIM28-203ENST00000593582 FAM102BQ5T8I3 360 aa17.06■□□□□ 0.32
TRIM28-203ENST00000593582 ZNF579Q8NAF0 562 aaKnown RBP17.06■□□□□ 0.32
TRIM28-203ENST00000593582 PSPC1Q8WXF1 523 aaKnown RBP17.06■□□□□ 0.32
TRIM28-203ENST00000593582 FDXACB1Q9BRP7 624 aaPredicted RBP17.06■□□□□ 0.32
TRIM28-203ENST00000593582 LMAN2LQ9H0V9 348 aa17.06■□□□□ 0.32
TRIM28-203ENST00000593582 TMEM60Q9H2L4 133 aa17.06■□□□□ 0.32
TRIM28-203ENST00000593582 DACT1Q9NYF0 836 aa17.06■□□□□ 0.32
TRIM28-203ENST00000593582 COL4A3BPQ9Y5P4 624 aa17.06■□□□□ 0.32
TRIM28-203ENST00000593582 TBKBP1A7MCY6 615 aa17.05■□□□□ 0.32
TRIM28-203ENST00000593582 ZBTB39O15060 712 aa17.05■□□□□ 0.32
TRIM28-203ENST00000593582 HOXA2O43364 376 aa17.05■□□□□ 0.32
TRIM28-203ENST00000593582 LYPLA2O95372 231 aa17.05■□□□□ 0.32
TRIM28-203ENST00000593582 FGFR4P22455 802 aa17.05■□□□□ 0.32
TRIM28-203ENST00000593582 TRAPPC10P48553 1259 aa17.05■□□□□ 0.32
TRIM28-203ENST00000593582 MCM2P49736 904 aa17.05■□□□□ 0.32
TRIM28-203ENST00000593582 NAALADL2Q58DX5 795 aa17.05■□□□□ 0.32
TRIM28-203ENST00000593582 KSR1Q8IVT5 923 aa17.05■□□□□ 0.32
TRIM28-203ENST00000593582 TCP11Q8WWU5 503 aa17.05■□□□□ 0.32
TRIM28-203ENST00000593582 PRPF31Q8WWY3 499 aaKnown RBP17.05■□□□□ 0.32
TRIM28-203ENST00000593582 P2RX5Q93086 422 aa17.05■□□□□ 0.32
TRIM28-203ENST00000593582 CCDC43Q96MW1 224 aaKnown RBP17.05■□□□□ 0.32
TRIM28-203ENST00000593582 TBC1D32Q96NH3 1257 aa17.05■□□□□ 0.32
TRIM28-203ENST00000593582 CHST12Q9NRB3 414 aa17.05■□□□□ 0.32
TRIM28-203ENST00000593582 NOL7Q9UMY1 257 aaKnown RBP17.05■□□□□ 0.32
TRIM28-203ENST00000593582 RALGAPA2Q2PPJ7 1873 aa17.04■□□□□ 0.32
TRIM28-203ENST00000593582 POTEMA6NI47 508 aa17.04■□□□□ 0.32
TRIM28-203ENST00000593582 GRM6O15303 877 aa17.04■□□□□ 0.32
TRIM28-203ENST00000593582 FGFR1P11362 822 aa17.04■□□□□ 0.32
TRIM28-203ENST00000593582 EMC2Q15006 297 aa17.04■□□□□ 0.32
TRIM28-203ENST00000593582 ZNF174Q15697 407 aa17.04■□□□□ 0.32
TRIM28-203ENST00000593582 TTC38Q5R3I4 469 aa17.04■□□□□ 0.32
TRIM28-203ENST00000593582 SPOUT1Q5T280 376 aaKnown RBP17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms