RNA–Protein interactions for RNA: ENST00000586435.1

LIG3-209, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 588 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-209ENST00000586435 SAMM50Q9Y512 469 aa13.42□□□□□ -0.26
LIG3-209ENST00000586435 TRIOO75962 3097 aa13.41□□□□□ -0.26
LIG3-209ENST00000586435 EDIL3O43854 480 aa13.41□□□□□ -0.26
LIG3-209ENST00000586435 ZSCAN20P17040 1043 aaPredicted RBP13.41□□□□□ -0.26
LIG3-209ENST00000586435 RPS6KB1P23443 525 aa13.41□□□□□ -0.26
LIG3-209ENST00000586435 SFNP31947 248 aa13.41□□□□□ -0.26
LIG3-209ENST00000586435 GPC3P51654 580 aa13.41□□□□□ -0.26
LIG3-209ENST00000586435 USP11P51784 963 aa13.41□□□□□ -0.26
LIG3-209ENST00000586435 JAK3P52333 1124 aa13.41□□□□□ -0.26
LIG3-209ENST00000586435 EVCP57679 992 aa13.41□□□□□ -0.26
LIG3-209ENST00000586435 PRKCEQ02156 737 aa13.41□□□□□ -0.26
LIG3-209ENST00000586435 RDM1Q8NG50 284 aa13.41□□□□□ -0.26
LIG3-209ENST00000586435 PHKBQ93100 1093 aa13.41□□□□□ -0.26
LIG3-209ENST00000586435 CASD1Q96PB1 797 aa13.41□□□□□ -0.26
LIG3-209ENST00000586435 NGRNQ9NPE2 291 aaKnown RBP13.41□□□□□ -0.26
LIG3-209ENST00000586435 SH3GLB2Q9NR46 395 aa13.41□□□□□ -0.26
LIG3-209ENST00000586435 NRBP2Q9NSY0 501 aa13.41□□□□□ -0.26
LIG3-209ENST00000586435 PUF60Q9UHX1 559 aaKnown RBP13.41□□□□□ -0.26
LIG3-209ENST00000586435 AKT3Q9Y243 479 aa13.41□□□□□ -0.26
LIG3-209ENST00000586435 SNX14Q9Y5W7 946 aa13.41□□□□□ -0.26
LIG3-209ENST00000586435 PER2O15055 1255 aa13.4□□□□□ -0.26
LIG3-209ENST00000586435 MSH4O15457 936 aa13.4□□□□□ -0.26
LIG3-209ENST00000586435 DARSP14868 501 aaKnown RBP13.4□□□□□ -0.26
LIG3-209ENST00000586435 ZXDAP98168 799 aa13.4□□□□□ -0.26
LIG3-209ENST00000586435 KCNT2Q6UVM3 1135 aa13.4□□□□□ -0.26
LIG3-209ENST00000586435 LRRC55Q6ZSA7 311 aa13.4□□□□□ -0.26
LIG3-209ENST00000586435 TRIM67Q6ZTA4 783 aa13.4□□□□□ -0.26
LIG3-209ENST00000586435 TRMT1LQ7Z2T5 733 aaKnown RBP13.4□□□□□ -0.26
LIG3-209ENST00000586435 ALYREFQ86V81 257 aaKnown RBP13.4□□□□□ -0.26
LIG3-209ENST00000586435 ECHDC2Q86YB7 292 aa13.4□□□□□ -0.26
LIG3-209ENST00000586435 ABI1Q8IZP0 508 aa13.4□□□□□ -0.26
LIG3-209ENST00000586435 LRRC71Q8N4P6 559 aa13.4□□□□□ -0.26
LIG3-209ENST00000586435 RSPH1Q8WYR4 309 aa13.4□□□□□ -0.26
LIG3-209ENST00000586435 SLC5A5Q92911 643 aa13.4□□□□□ -0.26
LIG3-209ENST00000586435 ZNF558Q96NG5 402 aa13.4□□□□□ -0.26
LIG3-209ENST00000586435 TCF25Q9BQ70 676 aa13.4□□□□□ -0.26
LIG3-209ENST00000586435 TEKT3Q9BXF9 490 aa13.4□□□□□ -0.26
LIG3-209ENST00000586435 C22orf23Q9BZE7 217 aa13.4□□□□□ -0.26
LIG3-209ENST00000586435 A0A0U1RQF3 1178 aa13.39□□□□□ -0.27
LIG3-209ENST00000586435 TMEM221A6NGB7 291 aa13.39□□□□□ -0.27
LIG3-209ENST00000586435 M0R296 226 aa13.39□□□□□ -0.27
LIG3-209ENST00000586435 GAS7O60861 476 aa13.39□□□□□ -0.27
LIG3-209ENST00000586435 EOMESO95936 686 aa13.39□□□□□ -0.27
LIG3-209ENST00000586435 PSMA5P28066 241 aa13.39□□□□□ -0.27
LIG3-209ENST00000586435 RBM10P98175 930 aaKnown RBP13.39□□□□□ -0.27
LIG3-209ENST00000586435 CDC42EP1Q00587 391 aa13.39□□□□□ -0.27
LIG3-209ENST00000586435 TBC1D8BQ0IIM8 1120 aa13.39□□□□□ -0.27
LIG3-209ENST00000586435 TARBP2Q15633 366 aaKnown RBP13.39□□□□□ -0.27
LIG3-209ENST00000586435 UGCGQ16739 394 aa13.39□□□□□ -0.27
LIG3-209ENST00000586435 CLLU1OSQ5K130 101 aa13.39□□□□□ -0.27
LIG3-209ENST00000586435 LRCH2Q5VUJ6 765 aa13.39□□□□□ -0.27
LIG3-209ENST00000586435 PLPP4Q5VZY2 271 aa13.39□□□□□ -0.27
LIG3-209ENST00000586435 ANKRD54Q6NXT1 300 aa13.39□□□□□ -0.27
LIG3-209ENST00000586435 ZNF598Q86UK7 904 aaKnown RBP13.39□□□□□ -0.27
LIG3-209ENST00000586435 FAM177A1Q8N128 213 aaPredicted RBP13.39□□□□□ -0.27
LIG3-209ENST00000586435 CCDC136Q96JN2 1154 aa13.39□□□□□ -0.27
LIG3-209ENST00000586435 SLC26A6Q9BXS9 759 aa13.39□□□□□ -0.27
LIG3-209ENST00000586435 MRPL9Q9BYD2 267 aaKnown RBP13.39□□□□□ -0.27
LIG3-209ENST00000586435 S1PR5Q9H228 398 aa13.39□□□□□ -0.27
LIG3-209ENST00000586435 ENTPD7Q9NQZ7 604 aa13.39□□□□□ -0.27
LIG3-209ENST00000586435 DACT1Q9NYF0 836 aa13.39□□□□□ -0.27
LIG3-209ENST00000586435 VPS54Q9P1Q0 977 aa13.39□□□□□ -0.27
LIG3-209ENST00000586435 PSMD10O75832 226 aa13.38□□□□□ -0.27
LIG3-209ENST00000586435 HOXB8P17481 243 aaPredicted RBP13.38□□□□□ -0.27
LIG3-209ENST00000586435 PDIA3P30101 505 aaKnown RBP13.38□□□□□ -0.27
LIG3-209ENST00000586435 MRE11P49959 708 aa13.38□□□□□ -0.27
LIG3-209ENST00000586435 KRT17Q04695 432 aa13.38□□□□□ -0.27
LIG3-209ENST00000586435 SIGLEC14Q08ET2 396 aa13.38□□□□□ -0.27
LIG3-209ENST00000586435 Q4G0T1 1027 aa13.38□□□□□ -0.27
LIG3-209ENST00000586435 SYCE2Q6PIF2 218 aa13.38□□□□□ -0.27
LIG3-209ENST00000586435 MOXD1Q6UVY6 613 aa13.38□□□□□ -0.27
LIG3-209ENST00000586435 B3GNT9Q6UX72 402 aa13.38□□□□□ -0.27
LIG3-209ENST00000586435 SLC39A11Q8N1S5 342 aa13.38□□□□□ -0.27
LIG3-209ENST00000586435 RPGRIP1Q96KN7 1286 aa13.38□□□□□ -0.27
LIG3-209ENST00000586435 PRRX2Q99811 253 aa13.38□□□□□ -0.27
LIG3-209ENST00000586435 TRAIPQ9BWF2 469 aa13.38□□□□□ -0.27
LIG3-209ENST00000586435 NIFKQ9BYG3 293 aaKnown RBP13.38□□□□□ -0.27
LIG3-209ENST00000586435 UNC45AQ9H3U1 944 aa13.38□□□□□ -0.27
LIG3-209ENST00000586435 CHST12Q9NRB3 414 aa13.38□□□□□ -0.27
LIG3-209ENST00000586435 SPG21Q9NZD8 308 aa13.38□□□□□ -0.27
LIG3-209ENST00000586435 CACNA1HO95180 2353 aa13.37□□□□□ -0.27
LIG3-209ENST00000586435 MYO10Q9HD67 2058 aa13.37□□□□□ -0.27
LIG3-209ENST00000586435 CYP3A7-CYP3A51PA0A087WV96 503 aa13.37□□□□□ -0.27
LIG3-209ENST00000586435 IGKV6-21A0A0C4DH24 114 aa13.37□□□□□ -0.27
LIG3-209ENST00000586435 CARNS1A5YM72 827 aa13.37□□□□□ -0.27
LIG3-209ENST00000586435 HIDE1A8MVS5 230 aa13.37□□□□□ -0.27
LIG3-209ENST00000586435 EPB41L2O43491 1005 aaKnown RBP13.37□□□□□ -0.27
LIG3-209ENST00000586435 CHMP2AO43633 222 aa13.37□□□□□ -0.27
LIG3-209ENST00000586435 REC8O95072 547 aa13.37□□□□□ -0.27
LIG3-209ENST00000586435 CYP3A7P24462 503 aa13.37□□□□□ -0.27
LIG3-209ENST00000586435 TECP42680 631 aa13.37□□□□□ -0.27
LIG3-209ENST00000586435 XKR3Q5GH77 459 aa13.37□□□□□ -0.27
LIG3-209ENST00000586435 TRIM22Q8IYM9 498 aa13.37□□□□□ -0.27
LIG3-209ENST00000586435 DAGLBQ8NCG7 672 aa13.37□□□□□ -0.27
LIG3-209ENST00000586435 TBCKQ8TEA7 893 aa13.37□□□□□ -0.27
LIG3-209ENST00000586435 NLRP7Q8WX94 980 aa13.37□□□□□ -0.27
LIG3-209ENST00000586435 CASP10Q92851 521 aa13.37□□□□□ -0.27
LIG3-209ENST00000586435 PBXIP1Q96AQ6 731 aa13.37□□□□□ -0.27
LIG3-209ENST00000586435 MBOAT7Q96N66 472 aa13.37□□□□□ -0.27
LIG3-209ENST00000586435 SCLT1Q96NL6 688 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms