RNA–Protein interactions for RNA: ENST00000583344.1

SMCHD1-208, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 738 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-208ENST00000583344 C2orf78A6NCI8 922 aa6.16□□□□□ -1.42
SMCHD1-208ENST00000583344 FNTBP49356 437 aa6.16□□□□□ -1.42
SMCHD1-208ENST00000583344 ROM1Q03395 351 aa6.16□□□□□ -1.42
SMCHD1-208ENST00000583344 CRHR2Q13324 411 aa6.16□□□□□ -1.42
SMCHD1-208ENST00000583344 ZNF460Q14592 562 aa6.16□□□□□ -1.42
SMCHD1-208ENST00000583344 RRP1BQ14684 758 aaKnown RBP6.16□□□□□ -1.42
SMCHD1-208ENST00000583344 DDX53Q86TM3 631 aaKnown RBP6.16□□□□□ -1.42
SMCHD1-208ENST00000583344 ANKRD53Q8N9V6 530 aa6.16□□□□□ -1.42
SMCHD1-208ENST00000583344 CHST14Q8NCH0 376 aa6.16□□□□□ -1.42
SMCHD1-208ENST00000583344 SLC7A6OSQ96CW6 309 aaPredicted RBP6.16□□□□□ -1.42
SMCHD1-208ENST00000583344 GPHA2Q96T91 129 aa6.16□□□□□ -1.42
SMCHD1-208ENST00000583344 IKZF4Q9H2S9 585 aa6.16□□□□□ -1.42
SMCHD1-208ENST00000583344 PLD2O14939 933 aa6.15□□□□□ -1.42
SMCHD1-208ENST00000583344 H2AFYO75367 372 aaKnown RBP6.15□□□□□ -1.42
SMCHD1-208ENST00000583344 BPIFB4P59827 614 aa6.15□□□□□ -1.42
SMCHD1-208ENST00000583344 ADAM8P78325 824 aa6.15□□□□□ -1.42
SMCHD1-208ENST00000583344 SLFN12LQ6IEE8 588 aa6.15□□□□□ -1.42
SMCHD1-208ENST00000583344 Q6ZRM9 215 aa6.15□□□□□ -1.42
SMCHD1-208ENST00000583344 GAREM2Q75VX8 874 aa6.15□□□□□ -1.42
SMCHD1-208ENST00000583344 TMPRSS6Q8IU80 811 aa6.15□□□□□ -1.42
SMCHD1-208ENST00000583344 THEMISQ8N1K5 641 aaPredicted RBP6.15□□□□□ -1.42
SMCHD1-208ENST00000583344 AMER2Q8N7J2 671 aa6.15□□□□□ -1.42
SMCHD1-208ENST00000583344 ZNF483Q8TF39 744 aaPredicted RBP6.15□□□□□ -1.42
SMCHD1-208ENST00000583344 GCDHQ92947 438 aaPredicted RBP6.15□□□□□ -1.42
SMCHD1-208ENST00000583344 MAML3Q96JK9 1138 aa6.15□□□□□ -1.42
SMCHD1-208ENST00000583344 SLC6A15Q9H2J7 730 aa6.15□□□□□ -1.42
SMCHD1-208ENST00000583344 ZNF703Q9H7S9 590 aaPredicted RBP6.15□□□□□ -1.42
SMCHD1-208ENST00000583344 AURKAIP1Q9NWT8 199 aaPredicted RBP6.15□□□□□ -1.42
SMCHD1-208ENST00000583344 UBA6A0AVT1 1052 aaPredicted RBP6.14□□□□□ -1.43
SMCHD1-208ENST00000583344 PTPDC1A2A3K4 754 aa6.14□□□□□ -1.43
SMCHD1-208ENST00000583344 CYP27B1O15528 508 aa6.14□□□□□ -1.43
SMCHD1-208ENST00000583344 DNAJC8O75937 253 aaPredicted RBP6.14□□□□□ -1.43
SMCHD1-208ENST00000583344 PTX3P26022 381 aaPredicted RBP6.14□□□□□ -1.43
SMCHD1-208ENST00000583344 IGFALSP35858 605 aa6.14□□□□□ -1.43
SMCHD1-208ENST00000583344 SCNN1GP51170 649 aa6.14□□□□□ -1.43
SMCHD1-208ENST00000583344 SESN2P58004 480 aaPredicted RBP6.14□□□□□ -1.43
SMCHD1-208ENST00000583344 DPTQ07507 201 aa6.14□□□□□ -1.43
SMCHD1-208ENST00000583344 TCIRG1Q13488 830 aa6.14□□□□□ -1.43
SMCHD1-208ENST00000583344 DGKDQ16760 1214 aa6.14□□□□□ -1.43
SMCHD1-208ENST00000583344 ARHGAP44Q17R89 818 aa6.14□□□□□ -1.43
SMCHD1-208ENST00000583344 PRAMEF9Q5VWM5 478 aa6.14□□□□□ -1.43
SMCHD1-208ENST00000583344 LARP4BQ92615 738 aaKnown RBP6.14□□□□□ -1.43
SMCHD1-208ENST00000583344 LPPQ93052 612 aa6.14□□□□□ -1.43
SMCHD1-208ENST00000583344 NKD2Q969F2 451 aaPredicted RBP6.14□□□□□ -1.43
SMCHD1-208ENST00000583344 E2F7Q96AV8 911 aa6.14□□□□□ -1.43
SMCHD1-208ENST00000583344 DNAJC2Q99543 621 aaKnown RBP6.14□□□□□ -1.43
SMCHD1-208ENST00000583344 MPHOSPH9Q99550 1183 aa6.14□□□□□ -1.43
SMCHD1-208ENST00000583344 PCIF1Q9H4Z3 704 aa6.14□□□□□ -1.43
SMCHD1-208ENST00000583344 SLC2A4RGQ9NR83 387 aa6.14□□□□□ -1.43
SMCHD1-208ENST00000583344 REXO2Q9Y3B8 237 aaKnown RBP6.14□□□□□ -1.43
SMCHD1-208ENST00000583344 TNPO3Q9Y5L0 923 aaKnown RBP6.14□□□□□ -1.43
SMCHD1-208ENST00000583344 WDR33Q9C0J8 1336 aaKnown RBP6.14□□□□□ -1.43
SMCHD1-208ENST00000583344 TRAF5O00463 557 aa6.13□□□□□ -1.43
SMCHD1-208ENST00000583344 OPA1O60313 960 aa6.13□□□□□ -1.43
SMCHD1-208ENST00000583344 ADH4P08319 380 aa6.13□□□□□ -1.43
SMCHD1-208ENST00000583344 TTC38Q5R3I4 469 aa6.13□□□□□ -1.43
SMCHD1-208ENST00000583344 SOGA3Q5TF21 947 aa6.13□□□□□ -1.43
SMCHD1-208ENST00000583344 KIAA1958Q8N8K9 716 aa6.13□□□□□ -1.43
SMCHD1-208ENST00000583344 GFM2Q969S9 779 aaKnown RBP6.13□□□□□ -1.43
SMCHD1-208ENST00000583344 CEP89Q96ST8 783 aa6.13□□□□□ -1.43
SMCHD1-208ENST00000583344 OSBPL2Q9H1P3 480 aa6.13□□□□□ -1.43
SMCHD1-208ENST00000583344 C11orf21Q9P2W6 132 aa6.13□□□□□ -1.43
SMCHD1-208ENST00000583344 DNAI1Q9UI46 699 aa6.13□□□□□ -1.43
SMCHD1-208ENST00000583344 UBE2QL1A1L167 161 aa6.12□□□□□ -1.43
SMCHD1-208ENST00000583344 GOLGA8BA8MQT2 603 aa6.12□□□□□ -1.43
SMCHD1-208ENST00000583344 B4E1Z4 1266 aa6.12□□□□□ -1.43
SMCHD1-208ENST00000583344 H7C1D1 291 aa6.12□□□□□ -1.43
SMCHD1-208ENST00000583344 SLC25A3Q00325 362 aa6.12□□□□□ -1.43
SMCHD1-208ENST00000583344 SQSTM1Q13501 440 aa6.12□□□□□ -1.43
SMCHD1-208ENST00000583344 BMS1Q14692 1282 aaKnown RBP6.12□□□□□ -1.43
SMCHD1-208ENST00000583344 MYBPC3Q14896 1274 aa6.12□□□□□ -1.43
SMCHD1-208ENST00000583344 PIK3R6Q5UE93 754 aa6.12□□□□□ -1.43
SMCHD1-208ENST00000583344 ZNF627Q7L945 461 aa6.12□□□□□ -1.43
SMCHD1-208ENST00000583344 LDLRAD3Q86YD5 345 aa6.12□□□□□ -1.43
SMCHD1-208ENST00000583344 ANKRD35Q8N283 1001 aa6.12□□□□□ -1.43
SMCHD1-208ENST00000583344 CLIP3Q96DZ5 547 aa6.12□□□□□ -1.43
SMCHD1-208ENST00000583344 DYDC2Q96IM9 177 aa6.12□□□□□ -1.43
SMCHD1-208ENST00000583344 C16orf92Q96LL3 132 aa6.12□□□□□ -1.43
SMCHD1-208ENST00000583344 TUBGCP5Q96RT8 1024 aa6.12□□□□□ -1.43
SMCHD1-208ENST00000583344 KANSL2Q9H9L4 492 aa6.12□□□□□ -1.43
SMCHD1-208ENST00000583344 ACSS2Q9NR19 701 aa6.12□□□□□ -1.43
SMCHD1-208ENST00000583344 POLR3BQ9NW08 1133 aaPredicted RBP6.12□□□□□ -1.43
SMCHD1-208ENST00000583344 PARPBPQ9NWS1 579 aa6.12□□□□□ -1.43
SMCHD1-208ENST00000583344 ASLP04424 464 aa6.11□□□□□ -1.43
SMCHD1-208ENST00000583344 SLC9A1P19634 815 aa6.11□□□□□ -1.43
SMCHD1-208ENST00000583344 MAKP20794 623 aa6.11□□□□□ -1.43
SMCHD1-208ENST00000583344 ELAVL1Q15717 326 aaKnown RBP6.11□□□□□ -1.43
SMCHD1-208ENST00000583344 FNDC3BQ53EP0 1204 aaKnown RBP6.11□□□□□ -1.43
SMCHD1-208ENST00000583344 ESRP1Q6NXG1 681 aaKnown RBP6.11□□□□□ -1.43
SMCHD1-208ENST00000583344 FAM111BQ6SJ93 734 aa6.11□□□□□ -1.43
SMCHD1-208ENST00000583344 CLEC14AQ86T13 490 aa6.11□□□□□ -1.43
SMCHD1-208ENST00000583344 MIEF2Q96C03 454 aa6.11□□□□□ -1.43
SMCHD1-208ENST00000583344 CABP5Q9NP86 173 aa6.11□□□□□ -1.43
SMCHD1-208ENST00000583344 IL23AQ9NPF7 189 aa6.11□□□□□ -1.43
SMCHD1-208ENST00000583344 KCMF1Q9P0J7 381 aa6.11□□□□□ -1.43
SMCHD1-208ENST00000583344 CDK11AQ9UQ88 783 aaPredicted RBP6.11□□□□□ -1.43
SMCHD1-208ENST00000583344 A0A087X1B8 175 aa6.1□□□□□ -1.43
SMCHD1-208ENST00000583344 TOX4O94842 621 aa6.1□□□□□ -1.43
SMCHD1-208ENST00000583344 HNRNPLP14866 589 aaKnown RBP eCLIP6.1□□□□□ -1.43
SMCHD1-208ENST00000583344 SDSP20132 328 aa6.1□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms