RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 KANSL1Q7Z3B3 1105 aa8.88□□□□□ -0.99
SS18-214ENST00000580003 HDGFL2Q7Z4V5 671 aaPredicted RBP8.88□□□□□ -0.99
SS18-214ENST00000580003 AFAP1L2Q8N4X5 818 aa8.88□□□□□ -0.99
SS18-214ENST00000580003 ZNF496Q96IT1 587 aaPredicted RBP8.88□□□□□ -0.99
SS18-214ENST00000580003 OR10A2Q9H208 303 aa8.88□□□□□ -0.99
SS18-214ENST00000580003 KCNG1Q9UIX4 513 aa8.88□□□□□ -0.99
SS18-214ENST00000580003 WDR3Q9UNX4 943 aaKnown RBP eCLIP8.88□□□□□ -0.99
SS18-214ENST00000580003 VWA7Q9Y334 891 aa8.88□□□□□ -0.99
SS18-214ENST00000580003 NR2E1Q9Y466 385 aa8.88□□□□□ -0.99
SS18-214ENST00000580003 SBNO2Q9Y2G9 1366 aa8.87□□□□□ -0.99
SS18-214ENST00000580003 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP8.87□□□□□ -0.99
SS18-214ENST00000580003 ITGB3P05106 788 aa8.87□□□□□ -0.99
SS18-214ENST00000580003 RAC3P60763 192 aa8.87□□□□□ -0.99
SS18-214ENST00000580003 KLHDC10Q6PID8 442 aa8.87□□□□□ -0.99
SS18-214ENST00000580003 USP30Q70CQ3 517 aa8.87□□□□□ -0.99
SS18-214ENST00000580003 BMP8AQ7Z5Y6 402 aa8.87□□□□□ -0.99
SS18-214ENST00000580003 DYDC2Q96IM9 177 aa8.87□□□□□ -0.99
SS18-214ENST00000580003 LMF1Q96S06 567 aa8.87□□□□□ -0.99
SS18-214ENST00000580003 MTG2Q9H4K7 406 aa8.87□□□□□ -0.99
SS18-214ENST00000580003 PPP4R1LQ9P1A2 415 aa8.87□□□□□ -0.99
SS18-214ENST00000580003 DENND2AQ9ULE3 1009 aa8.87□□□□□ -0.99
SS18-214ENST00000580003 K7ESM1 405 aa8.86□□□□□ -0.99
SS18-214ENST00000580003 ARHGAP6O43182 974 aa8.86□□□□□ -0.99
SS18-214ENST00000580003 H2AFYO75367 372 aaKnown RBP8.86□□□□□ -0.99
SS18-214ENST00000580003 SESN3P58005 492 aa8.86□□□□□ -0.99
SS18-214ENST00000580003 RNF151Q2KHN1 245 aa8.86□□□□□ -0.99
SS18-214ENST00000580003 RASSF3Q86WH2 238 aa8.86□□□□□ -0.99
SS18-214ENST00000580003 GFM2Q969S9 779 aaKnown RBP8.86□□□□□ -0.99
SS18-214ENST00000580003 LRRC37BQ96QE4 947 aa8.86□□□□□ -0.99
SS18-214ENST00000580003 SEMA4AQ9H3S1 761 aa8.86□□□□□ -0.99
SS18-214ENST00000580003 MS4A5Q9H3V2 200 aa8.86□□□□□ -0.99
SS18-214ENST00000580003 POLR3BQ9NW08 1133 aaPredicted RBP8.86□□□□□ -0.99
SS18-214ENST00000580003 ELL2O00472 640 aaPredicted RBP8.85□□□□□ -0.99
SS18-214ENST00000580003 KDM1AO60341 852 aa8.85□□□□□ -0.99
SS18-214ENST00000580003 ANTXR2P58335 489 aa8.85□□□□□ -0.99
SS18-214ENST00000580003 UNQ6494/PRO21346Q6UXR6 183 aa8.85□□□□□ -0.99
SS18-214ENST00000580003 LIMS2Q7Z4I7 341 aa8.85□□□□□ -0.99
SS18-214ENST00000580003 CIR1Q86X95 450 aaPredicted RBP8.85□□□□□ -0.99
SS18-214ENST00000580003 BCL6BQ8N143 479 aaPredicted RBP8.85□□□□□ -0.99
SS18-214ENST00000580003 NEIL1Q96FI4 390 aaPredicted RBP8.85□□□□□ -0.99
SS18-214ENST00000580003 NOL10Q9BSC4 688 aaKnown RBP8.85□□□□□ -0.99
SS18-214ENST00000580003 PITHD1Q9GZP4 211 aaPredicted RBP8.85□□□□□ -0.99
SS18-214ENST00000580003 CNOT11Q9UKZ1 510 aaKnown RBP8.85□□□□□ -0.99
SS18-214ENST00000580003 A0A0A6YYJ9 748 aa8.84□□□□□ -0.99
SS18-214ENST00000580003 LCHNA4D1U4 455 aa8.84□□□□□ -0.99
SS18-214ENST00000580003 ADAM15Q13444 863 aa8.84□□□□□ -0.99
SS18-214ENST00000580003 NFYCQ13952 458 aa8.84□□□□□ -0.99
SS18-214ENST00000580003 STAT4Q14765 748 aa8.84□□□□□ -0.99
SS18-214ENST00000580003 ATL2Q8NHH9 583 aa8.84□□□□□ -0.99
SS18-214ENST00000580003 LPPQ93052 612 aa8.84□□□□□ -0.99
SS18-214ENST00000580003 HIST1H2AHQ96KK5 128 aa8.84□□□□□ -0.99
SS18-214ENST00000580003 WDR92Q96MX6 357 aa8.84□□□□□ -0.99
SS18-214ENST00000580003 RBM15Q96T37 977 aaKnown RBP eCLIP8.84□□□□□ -0.99
SS18-214ENST00000580003 HIST1H2AJQ99878 128 aa8.84□□□□□ -0.99
SS18-214ENST00000580003 PTPN18Q99952 460 aa8.84□□□□□ -0.99
SS18-214ENST00000580003 C12orf65Q9H3J6 166 aaKnown RBP8.84□□□□□ -0.99
SS18-214ENST00000580003 PUF60Q9UHX1 559 aaKnown RBP8.84□□□□□ -0.99
SS18-214ENST00000580003 MYPNQ86TC9 1320 aa8.83□□□□□ -1
SS18-214ENST00000580003 OPHN1O60890 802 aa8.83□□□□□ -1
SS18-214ENST00000580003 PCDH8O95206 1070 aa8.83□□□□□ -1
SS18-214ENST00000580003 TBR1Q16650 682 aa8.83□□□□□ -1
SS18-214ENST00000580003 LCE4AQ5TA78 99 aa8.83□□□□□ -1
SS18-214ENST00000580003 IQSEC1Q6DN90 963 aa8.83□□□□□ -1
SS18-214ENST00000580003 CXorf67Q86X51 503 aaPredicted RBP8.83□□□□□ -1
SS18-214ENST00000580003 GIMAP8Q8ND71 665 aaPredicted RBP8.83□□□□□ -1
SS18-214ENST00000580003 OR14K1Q8NGZ2 314 aa8.83□□□□□ -1
SS18-214ENST00000580003 LOXL4Q96JB6 756 aa8.83□□□□□ -1
SS18-214ENST00000580003 MEGF9Q9H1U4 602 aa8.83□□□□□ -1
SS18-214ENST00000580003 TMPRSS15P98073 1019 aa8.82□□□□□ -1
SS18-214ENST00000580003 ZBTB41Q5SVQ8 909 aa8.82□□□□□ -1
SS18-214ENST00000580003 GCDHQ92947 438 aaPredicted RBP8.82□□□□□ -1
SS18-214ENST00000580003 ANO3Q9BYT9 981 aa8.82□□□□□ -1
SS18-214ENST00000580003 WNT8AQ9H1J5 351 aa8.82□□□□□ -1
SS18-214ENST00000580003 DNAI1Q9UI46 699 aa8.82□□□□□ -1
SS18-214ENST00000580003 B8ZZF3 427 aa8.81□□□□□ -1
SS18-214ENST00000580003 DAPK3O43293 454 aa8.81□□□□□ -1
SS18-214ENST00000580003 EYA4O95677 639 aa8.81□□□□□ -1
SS18-214ENST00000580003 CR2P20023 1033 aa8.81□□□□□ -1
SS18-214ENST00000580003 TAX1BP1Q86VP1 789 aa8.81□□□□□ -1
SS18-214ENST00000580003 CLRN3Q8NCR9 226 aa8.81□□□□□ -1
SS18-214ENST00000580003 WDR66Q8TBY9 1149 aa8.81□□□□□ -1
SS18-214ENST00000580003 NKD2Q969F2 451 aaPredicted RBP8.81□□□□□ -1
SS18-214ENST00000580003 HAPLN2Q9GZV7 340 aa8.81□□□□□ -1
SS18-214ENST00000580003 MCM8Q9UJA3 840 aa8.81□□□□□ -1
SS18-214ENST00000580003 OAZ3Q9UMX2 235 aa8.81□□□□□ -1
SS18-214ENST00000580003 CTDP1Q9Y5B0 961 aaPredicted RBP8.81□□□□□ -1
SS18-214ENST00000580003 PCDHB6Q9Y5E3 794 aa8.81□□□□□ -1
SS18-214ENST00000580003 PRSS38A1L453 326 aa8.8□□□□□ -1
SS18-214ENST00000580003 CDC14BO60729 498 aa8.8□□□□□ -1
SS18-214ENST00000580003 FAPQ12884 760 aa8.8□□□□□ -1
SS18-214ENST00000580003 MAN2A1Q16706 1144 aa8.8□□□□□ -1
SS18-214ENST00000580003 ZNF662Q6ZS27 426 aa8.8□□□□□ -1
SS18-214ENST00000580003 CDYL2Q8N8U2 506 aa8.8□□□□□ -1
SS18-214ENST00000580003 SLC7A6OSQ96CW6 309 aaPredicted RBP8.8□□□□□ -1
SS18-214ENST00000580003 SAMD11Q96NU1 681 aa8.8□□□□□ -1
SS18-214ENST00000580003 GNRHR2Q96P88 292 aa8.8□□□□□ -1
SS18-214ENST00000580003 SSBP3Q9BWW4 388 aaPredicted RBP8.8□□□□□ -1
SS18-214ENST00000580003 TOPORSQ9NS56 1045 aaPredicted RBP8.8□□□□□ -1
SS18-214ENST00000580003 USP18Q9UMW8 372 aa8.8□□□□□ -1
SS18-214ENST00000580003 PPP2R3BQ9Y5P8 575 aa8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 77 ms