RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 PHACTR2O75167 634 aa10.99□□□□□ -0.65
VPS53-220ENST00000576149 P4HBP07237 508 aaKnown RBP10.99□□□□□ -0.65
VPS53-220ENST00000576149 STAT1P42224 750 aa10.99□□□□□ -0.65
VPS53-220ENST00000576149 CYP2J2P51589 502 aa10.99□□□□□ -0.65
VPS53-220ENST00000576149 MRPS25P82663 173 aaKnown RBP10.99□□□□□ -0.65
VPS53-220ENST00000576149 PPP2R5AQ15172 486 aa10.99□□□□□ -0.65
VPS53-220ENST00000576149 IFI16Q16666 785 aaKnown RBP10.99□□□□□ -0.65
VPS53-220ENST00000576149 C8orf74Q6P047 294 aa10.99□□□□□ -0.65
VPS53-220ENST00000576149 MIER3Q7Z3K6 550 aa10.99□□□□□ -0.65
VPS53-220ENST00000576149 MCF2L2Q86YR7 1114 aa10.99□□□□□ -0.65
VPS53-220ENST00000576149 CCDC125Q86Z20 511 aa10.99□□□□□ -0.65
VPS53-220ENST00000576149 SLC9A9Q8IVB4 645 aa10.99□□□□□ -0.65
VPS53-220ENST00000576149 IL31RAQ8NI17 732 aa10.99□□□□□ -0.65
VPS53-220ENST00000576149 LPAR1Q92633 364 aa10.99□□□□□ -0.65
VPS53-220ENST00000576149 HOOK2Q96ED9 719 aa10.99□□□□□ -0.65
VPS53-220ENST00000576149 PACSIN2Q9UNF0 486 aaPredicted RBP10.99□□□□□ -0.65
VPS53-220ENST00000576149 LMAN1P49257 510 aa10.99□□□□□ -0.65
VPS53-220ENST00000576149 MYBPC2Q14324 1141 aa10.99□□□□□ -0.65
VPS53-220ENST00000576149 PADI6Q6TGC4 694 aa10.99□□□□□ -0.65
VPS53-220ENST00000576149 LRRC57Q8N9N7 239 aa10.99□□□□□ -0.65
VPS53-220ENST00000576149 STK33Q9BYT3 514 aa10.99□□□□□ -0.65
VPS53-220ENST00000576149 INTUQ9ULD6 942 aa10.99□□□□□ -0.65
VPS53-220ENST00000576149 UBIAD1Q9Y5Z9 338 aa10.99□□□□□ -0.65
VPS53-220ENST00000576149 A0A0A6YYK5 440 aaPredicted RBP10.98□□□□□ -0.65
VPS53-220ENST00000576149 F8VZ95 297 aa10.98□□□□□ -0.65
VPS53-220ENST00000576149 AGPSO00116 658 aa10.98□□□□□ -0.65
VPS53-220ENST00000576149 DDX3XO00571 662 aaKnown RBP eCLIP10.98□□□□□ -0.65
VPS53-220ENST00000576149 EVI5O60447 810 aa10.98□□□□□ -0.65
VPS53-220ENST00000576149 RNF40O75150 1001 aa10.98□□□□□ -0.65
VPS53-220ENST00000576149 GFPT2O94808 682 aa10.98□□□□□ -0.65
VPS53-220ENST00000576149 SOX5P35711 763 aa10.98□□□□□ -0.65
VPS53-220ENST00000576149 DNA2P51530 1060 aa10.98□□□□□ -0.65
VPS53-220ENST00000576149 EPHB4P54760 987 aa10.98□□□□□ -0.65
VPS53-220ENST00000576149 ITGB3BPQ13352 177 aaPredicted RBP10.98□□□□□ -0.65
VPS53-220ENST00000576149 RASA3Q14644 834 aa10.98□□□□□ -0.65
VPS53-220ENST00000576149 TNIP1Q15025 636 aa10.98□□□□□ -0.65
VPS53-220ENST00000576149 RPS6KA1Q15418 735 aa10.98□□□□□ -0.65
VPS53-220ENST00000576149 TKFCQ3LXA3 575 aa10.98□□□□□ -0.65
VPS53-220ENST00000576149 CBWD6Q4V339 395 aa10.98□□□□□ -0.65
VPS53-220ENST00000576149 CBWD3Q5JTY5 395 aa10.98□□□□□ -0.65
VPS53-220ENST00000576149 CBWD5Q5RIA9 395 aa10.98□□□□□ -0.65
VPS53-220ENST00000576149 PCNX4Q63HM2 1172 aa10.98□□□□□ -0.65
VPS53-220ENST00000576149 EMBQ6PCB8 327 aa10.98□□□□□ -0.65
VPS53-220ENST00000576149 SND1Q7KZF4 910 aaKnown RBP eCLIP10.98□□□□□ -0.65
VPS53-220ENST00000576149 EXOC8Q8IYI6 725 aa10.98□□□□□ -0.65
VPS53-220ENST00000576149 AGO4Q9HCK5 861 aaKnown RBP10.98□□□□□ -0.65
VPS53-220ENST00000576149 MYOZ2Q9NPC6 264 aa10.98□□□□□ -0.65
VPS53-220ENST00000576149 PKD2L1Q9P0L9 805 aa10.98□□□□□ -0.65
VPS53-220ENST00000576149 DBR1Q9UK59 544 aaKnown RBP10.98□□□□□ -0.65
VPS53-220ENST00000576149 H2AFZP0C0S5 128 aa10.98□□□□□ -0.65
VPS53-220ENST00000576149 MAPTP10636 758 aaKnown RBP10.98□□□□□ -0.65
VPS53-220ENST00000576149 GGCXP38435 758 aa10.98□□□□□ -0.65
VPS53-220ENST00000576149 NOP2P46087 812 aaKnown RBP10.98□□□□□ -0.65
VPS53-220ENST00000576149 MRPS9P82933 396 aaKnown RBP10.98□□□□□ -0.65
VPS53-220ENST00000576149 TAF3Q5VWG9 929 aa10.98□□□□□ -0.65
VPS53-220ENST00000576149 H2AFVQ71UI9 128 aa10.98□□□□□ -0.65
VPS53-220ENST00000576149 DNAAF5Q86Y56 855 aa10.98□□□□□ -0.65
VPS53-220ENST00000576149 SYCP3Q8IZU3 236 aa10.98□□□□□ -0.65
VPS53-220ENST00000576149 TPCN2Q8NHX9 752 aa10.98□□□□□ -0.65
VPS53-220ENST00000576149 SLC30A5Q8TAD4 765 aa10.98□□□□□ -0.65
VPS53-220ENST00000576149 OLIG1Q8TAK6 271 aa10.98□□□□□ -0.65
VPS53-220ENST00000576149 TMEM174Q8WUU8 243 aa10.98□□□□□ -0.65
VPS53-220ENST00000576149 TAF4BQ92750 862 aa10.98□□□□□ -0.65
VPS53-220ENST00000576149 KIAA1683Q9H0B3 1180 aa10.98□□□□□ -0.65
VPS53-220ENST00000576149 FAM204AQ9H8W3 233 aa10.98□□□□□ -0.65
VPS53-220ENST00000576149 SLC38A10Q9HBR0 1119 aa10.98□□□□□ -0.65
VPS53-220ENST00000576149 GDF3Q9NR23 364 aa10.98□□□□□ -0.65
VPS53-220ENST00000576149 LARSQ9P2J5 1176 aaKnown RBP10.98□□□□□ -0.65
VPS53-220ENST00000576149 DNAJC12Q9UKB3 198 aa10.98□□□□□ -0.65
VPS53-220ENST00000576149 ZHX2Q9Y6X8 837 aa10.98□□□□□ -0.65
VPS53-220ENST00000576149 EXOC3O60645 756 aa10.97□□□□□ -0.65
VPS53-220ENST00000576149 KIF4AO95239 1232 aa10.97□□□□□ -0.65
VPS53-220ENST00000576149 ALAS1P13196 640 aa10.97□□□□□ -0.65
VPS53-220ENST00000576149 BFSP1Q12934 665 aa10.97□□□□□ -0.65
VPS53-220ENST00000576149 DRAP1Q14919 205 aaPredicted RBP10.97□□□□□ -0.65
VPS53-220ENST00000576149 IFT20Q8IY31 132 aa10.97□□□□□ -0.65
VPS53-220ENST00000576149 CPXCR1Q8N123 301 aa10.97□□□□□ -0.65
VPS53-220ENST00000576149 USP38Q8NB14 1042 aa10.97□□□□□ -0.65
VPS53-220ENST00000576149 SYTL5Q8TDW5 730 aaPredicted RBP10.97□□□□□ -0.65
VPS53-220ENST00000576149 TEPSINQ96N21 525 aa10.97□□□□□ -0.65
VPS53-220ENST00000576149 GPR88Q9GZN0 384 aa10.97□□□□□ -0.65
VPS53-220ENST00000576149 INTS2Q9H0H0 1204 aaKnown RBP10.97□□□□□ -0.65
VPS53-220ENST00000576149 MAP3K20Q9NYL2 800 aaKnown RBP10.97□□□□□ -0.65
VPS53-220ENST00000576149 CALCOCO1Q9P1Z2 691 aa10.97□□□□□ -0.65
VPS53-220ENST00000576149 TMEM59LQ9UK28 342 aa10.97□□□□□ -0.65
VPS53-220ENST00000576149 DAAM1Q9Y4D1 1078 aa10.97□□□□□ -0.65
VPS53-220ENST00000576149 LOXHD1Q8IVV2 1947 aa10.97□□□□□ -0.65
VPS53-220ENST00000576149 GOLGA6BA6NDN3 693 aa10.97□□□□□ -0.65
VPS53-220ENST00000576149 K7ENM7 598 aa10.97□□□□□ -0.65
VPS53-220ENST00000576149 KCNK3O14649 394 aa10.97□□□□□ -0.65
VPS53-220ENST00000576149 LYPLA2O95372 231 aa10.97□□□□□ -0.65
VPS53-220ENST00000576149 GLI1P08151 1106 aa10.97□□□□□ -0.65
VPS53-220ENST00000576149 TRIM49P0CI25 452 aa10.97□□□□□ -0.65
VPS53-220ENST00000576149 TRIM49CP0CI26 452 aa10.97□□□□□ -0.65
VPS53-220ENST00000576149 ZBTB48P10074 688 aaPredicted RBP10.97□□□□□ -0.65
VPS53-220ENST00000576149 QARSP47897 775 aaKnown RBP10.97□□□□□ -0.65
VPS53-220ENST00000576149 RARRES1P49788 294 aa10.97□□□□□ -0.65
VPS53-220ENST00000576149 NPEPPSP55786 919 aa10.97□□□□□ -0.65
VPS53-220ENST00000576149 HNRNPH2P55795 449 aaKnown RBP10.97□□□□□ -0.65
VPS53-220ENST00000576149 MTMR1Q13613 665 aa10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms