RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 NMIQ13287 307 aaPredicted RBP7.78□□□□□ -1.16
VPS53-217ENST00000575100 KLF1Q13351 362 aaPredicted RBP7.78□□□□□ -1.16
VPS53-217ENST00000575100 GRIK5Q16478 980 aa7.78□□□□□ -1.16
VPS53-217ENST00000575100 CAVIN4Q5BKX8 364 aa7.78□□□□□ -1.16
VPS53-217ENST00000575100 KIAA1211LQ6NV74 962 aa7.78□□□□□ -1.16
VPS53-217ENST00000575100 PLBD1Q6P4A8 553 aa7.78□□□□□ -1.16
VPS53-217ENST00000575100 C11orf74Q86VG3 221 aa7.78□□□□□ -1.16
VPS53-217ENST00000575100 MYCT1Q8N699 235 aa7.78□□□□□ -1.16
VPS53-217ENST00000575100 LSM14AQ8ND56 463 aaKnown RBP7.78□□□□□ -1.16
VPS53-217ENST00000575100 AGBL3Q8NEM8 1001 aa7.78□□□□□ -1.16
VPS53-217ENST00000575100 C1orf162Q8NEQ5 155 aaPredicted RBP7.78□□□□□ -1.16
VPS53-217ENST00000575100 ZNF384Q8TF68 577 aa7.78□□□□□ -1.16
VPS53-217ENST00000575100 CDCA5Q96FF9 252 aa7.78□□□□□ -1.16
VPS53-217ENST00000575100 ZMAT2Q96NC0 199 aaKnown RBP7.78□□□□□ -1.16
VPS53-217ENST00000575100 XPO4Q9C0E2 1151 aaKnown RBP7.78□□□□□ -1.16
VPS53-217ENST00000575100 VTA1Q9NP79 307 aa7.78□□□□□ -1.16
VPS53-217ENST00000575100 GGA3Q9NZ52 723 aa7.78□□□□□ -1.16
VPS53-217ENST00000575100 MED23Q9ULK4 1368 aa7.78□□□□□ -1.16
VPS53-217ENST00000575100 AK9Q5TCS8 1911 aa7.77□□□□□ -1.17
VPS53-217ENST00000575100 TRIM75PA6NK02 468 aa7.77□□□□□ -1.17
VPS53-217ENST00000575100 AGRPO00253 132 aa7.77□□□□□ -1.17
VPS53-217ENST00000575100 ST18O60284 1047 aa7.77□□□□□ -1.17
VPS53-217ENST00000575100 CTNND1O60716 968 aaKnown RBP7.77□□□□□ -1.17
VPS53-217ENST00000575100 UQCRFS1P1P0C7P4 283 aa7.77□□□□□ -1.17
VPS53-217ENST00000575100 ACRP10323 421 aa7.77□□□□□ -1.17
VPS53-217ENST00000575100 VCAM1P19320 739 aa7.77□□□□□ -1.17
VPS53-217ENST00000575100 CES1P23141 567 aa7.77□□□□□ -1.17
VPS53-217ENST00000575100 BTKQ06187 659 aa7.77□□□□□ -1.17
VPS53-217ENST00000575100 ZNF252P-AS1Q0IIN9 211 aa7.77□□□□□ -1.17
VPS53-217ENST00000575100 TERF2Q15554 542 aa7.77□□□□□ -1.17
VPS53-217ENST00000575100 SKOR2Q2VWA4 1001 aaPredicted RBP7.77□□□□□ -1.17
VPS53-217ENST00000575100 C15orf52Q6ZUT6 534 aaKnown RBP7.77□□□□□ -1.17
VPS53-217ENST00000575100 VASH1Q7L8A9 365 aaPredicted RBP7.77□□□□□ -1.17
VPS53-217ENST00000575100 ZNF589Q86UQ0 364 aaPredicted RBP7.77□□□□□ -1.17
VPS53-217ENST00000575100 RASAL3Q86YV0 1011 aa7.77□□□□□ -1.17
VPS53-217ENST00000575100 C7orf61Q8IZ16 206 aa7.77□□□□□ -1.17
VPS53-217ENST00000575100 TDRD7Q8NHU6 1098 aaKnown RBP7.77□□□□□ -1.17
VPS53-217ENST00000575100 FAXDC2Q96IV6 333 aa7.77□□□□□ -1.17
VPS53-217ENST00000575100 ORAI3Q9BRQ5 295 aa7.77□□□□□ -1.17
VPS53-217ENST00000575100 AARSD1Q9BTE6 412 aaKnown RBP7.77□□□□□ -1.17
VPS53-217ENST00000575100 ZC3H12CQ9C0D7 883 aaKnown RBP7.77□□□□□ -1.17
VPS53-217ENST00000575100 CD209Q9NNX6 404 aa7.77□□□□□ -1.17
VPS53-217ENST00000575100 CRYL1Q9Y2S2 319 aa7.77□□□□□ -1.17
VPS53-217ENST00000575100 ECM29Q5VYK3 1845 aa7.77□□□□□ -1.17
VPS53-217ENST00000575100 RASA4BC9J798 803 aa7.77□□□□□ -1.17
VPS53-217ENST00000575100 SGSM2O43147 1006 aa7.77□□□□□ -1.17
VPS53-217ENST00000575100 RASA4O43374 803 aa7.77□□□□□ -1.17
VPS53-217ENST00000575100 PPFIA3O75145 1194 aa7.77□□□□□ -1.17
VPS53-217ENST00000575100 EDN3P14138 238 aa7.77□□□□□ -1.17
VPS53-217ENST00000575100 IGFALSP35858 605 aa7.77□□□□□ -1.17
VPS53-217ENST00000575100 ARSDP51689 593 aa7.77□□□□□ -1.17
VPS53-217ENST00000575100 NBPF9Q3BBW0 867 aa7.77□□□□□ -1.17
VPS53-217ENST00000575100 CFAP100Q494V2 611 aa7.77□□□□□ -1.17
VPS53-217ENST00000575100 DNAJC21Q5F1R6 531 aaKnown RBP7.77□□□□□ -1.17
VPS53-217ENST00000575100 RASIP1Q5U651 963 aa7.77□□□□□ -1.17
VPS53-217ENST00000575100 CTU1Q7Z7A3 348 aaKnown RBP7.77□□□□□ -1.17
VPS53-217ENST00000575100 UBE2Q1Q7Z7E8 422 aa7.77□□□□□ -1.17
VPS53-217ENST00000575100 ADGRA1Q86SQ6 560 aa7.77□□□□□ -1.17
VPS53-217ENST00000575100 CMTR1Q8N1G2 835 aaKnown RBP7.77□□□□□ -1.17
VPS53-217ENST00000575100 HDAC2Q92769 488 aaKnown RBP7.77□□□□□ -1.17
VPS53-217ENST00000575100 TRIM63Q969Q1 353 aa7.77□□□□□ -1.17
VPS53-217ENST00000575100 SCLYQ96I15 445 aa7.77□□□□□ -1.17
VPS53-217ENST00000575100 UBXN10Q96LJ8 280 aa7.77□□□□□ -1.17
VPS53-217ENST00000575100 LIN7BQ9HAP6 207 aa7.77□□□□□ -1.17
VPS53-217ENST00000575100 LRRC10BA6NIK2 292 aa7.76□□□□□ -1.17
VPS53-217ENST00000575100 SMTNL1A8MU46 457 aa7.76□□□□□ -1.17
VPS53-217ENST00000575100 TRPA1O75762 1119 aa7.76□□□□□ -1.17
VPS53-217ENST00000575100 IDH1O75874 414 aaKnown RBP7.76□□□□□ -1.17
VPS53-217ENST00000575100 IL1R1P14778 569 aa7.76□□□□□ -1.17
VPS53-217ENST00000575100 PRDX5P30044 214 aa7.76□□□□□ -1.17
VPS53-217ENST00000575100 TXLNAP40222 546 aa7.76□□□□□ -1.17
VPS53-217ENST00000575100 PSEN2P49810 448 aa7.76□□□□□ -1.17
VPS53-217ENST00000575100 PSMC1P62191 440 aaKnown RBP7.76□□□□□ -1.17
VPS53-217ENST00000575100 HSP90AA2PQ14568 343 aaPredicted RBP7.76□□□□□ -1.17
VPS53-217ENST00000575100 HIF1AQ16665 826 aa7.76□□□□□ -1.17
VPS53-217ENST00000575100 LRRFIP1Q32MZ4 808 aaKnown RBP7.76□□□□□ -1.17
VPS53-217ENST00000575100 PLA2G4EQ3MJ16 856 aa7.76□□□□□ -1.17
VPS53-217ENST00000575100 RRP12Q5JTH9 1297 aaKnown RBP7.76□□□□□ -1.17
VPS53-217ENST00000575100 UNC5AQ6ZN44 842 aa7.76□□□□□ -1.17
VPS53-217ENST00000575100 CCNJLQ8IV13 435 aa7.76□□□□□ -1.17
VPS53-217ENST00000575100 TMEM40Q8WWA1 233 aa7.76□□□□□ -1.17
VPS53-217ENST00000575100 OSBP2Q969R2 916 aa7.76□□□□□ -1.17
VPS53-217ENST00000575100 SH3KBP1Q96B97 665 aa7.76□□□□□ -1.17
VPS53-217ENST00000575100 NUDT16L1Q9BRJ7 211 aaKnown RBP7.76□□□□□ -1.17
VPS53-217ENST00000575100 MXD3Q9BW11 206 aa7.76□□□□□ -1.17
VPS53-217ENST00000575100 ZCCHC17Q9NP64 241 aaKnown RBP7.76□□□□□ -1.17
VPS53-217ENST00000575100 ASTN2O75129 1339 aaPredicted RBP7.76□□□□□ -1.17
VPS53-217ENST00000575100 DOCK2Q92608 1830 aa7.76□□□□□ -1.17
VPS53-217ENST00000575100 RBBP6Q7Z6E9 1792 aaKnown RBP7.75□□□□□ -1.17
VPS53-217ENST00000575100 LOC101059915A0A1B0GWI6 518 aaPredicted RBP7.75□□□□□ -1.17
VPS53-217ENST00000575100 TCRBV5S4A2TA0A5A2 114 aa7.75□□□□□ -1.17
VPS53-217ENST00000575100 FRAT2O75474 233 aaPredicted RBP7.75□□□□□ -1.17
VPS53-217ENST00000575100 PEX19P40855 299 aa7.75□□□□□ -1.17
VPS53-217ENST00000575100 ADCYAP1R1P41586 468 aa7.75□□□□□ -1.17
VPS53-217ENST00000575100 SCNN1BP51168 640 aa7.75□□□□□ -1.17
VPS53-217ENST00000575100 PPP2R2AP63151 447 aa7.75□□□□□ -1.17
VPS53-217ENST00000575100 SH3BP2P78314 561 aa7.75□□□□□ -1.17
VPS53-217ENST00000575100 PTH1RQ03431 593 aa7.75□□□□□ -1.17
VPS53-217ENST00000575100 ZC3H12AQ5D1E8 599 aaKnown RBP7.75□□□□□ -1.17
VPS53-217ENST00000575100 SLC9C2Q5TAH2 1124 aa7.75□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms