RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 CCDC43Q96MW1 224 aaKnown RBP22.96■■□□□ 1.27
VPS53-210ENST00000571456 CCSER1Q9C0I3 900 aa22.96■■□□□ 1.27
VPS53-210ENST00000571456 SMIM35A0A1B0GVV1 85 aa22.95■■□□□ 1.26
VPS53-210ENST00000571456 CUTAO60888 179 aa22.95■■□□□ 1.26
VPS53-210ENST00000571456 MED24O75448 989 aa22.95■■□□□ 1.26
VPS53-210ENST00000571456 TMOD1P28289 359 aa22.95■■□□□ 1.26
VPS53-210ENST00000571456 MARCKSP29966 332 aaPredicted RBP22.95■■□□□ 1.26
VPS53-210ENST00000571456 SCN5AQ14524 2016 aa22.95■■□□□ 1.26
VPS53-210ENST00000571456 ARID2Q68CP9 1835 aa22.95■■□□□ 1.26
VPS53-210ENST00000571456 MTHFD1LQ6UB35 978 aa22.95■■□□□ 1.26
VPS53-210ENST00000571456 ANO5Q75V66 913 aa22.95■■□□□ 1.26
VPS53-210ENST00000571456 CYP26B1Q9NR63 512 aa22.95■■□□□ 1.26
VPS53-210ENST00000571456 CCDC39Q9UFE4 941 aa22.95■■□□□ 1.26
VPS53-210ENST00000571456 EVPLQ92817 2033 aa22.94■■□□□ 1.26
VPS53-210ENST00000571456 TREHO43280 583 aa22.94■■□□□ 1.26
VPS53-210ENST00000571456 PFKMP08237 780 aa22.94■■□□□ 1.26
VPS53-210ENST00000571456 CDC42EP1Q00587 391 aa22.94■■□□□ 1.26
VPS53-210ENST00000571456 TAP1Q03518 808 aa22.94■■□□□ 1.26
VPS53-210ENST00000571456 TBC1D8BQ0IIM8 1120 aa22.94■■□□□ 1.26
VPS53-210ENST00000571456 MARCH8Q5T0T0 291 aa22.94■■□□□ 1.26
VPS53-210ENST00000571456 FAM43BQ6ZT52 329 aaPredicted RBP22.94■■□□□ 1.26
VPS53-210ENST00000571456 CABP7Q86V35 215 aa22.94■■□□□ 1.26
VPS53-210ENST00000571456 SLC7A3Q8WY07 619 aa22.94■■□□□ 1.26
VPS53-210ENST00000571456 SCLYQ96I15 445 aa22.94■■□□□ 1.26
VPS53-210ENST00000571456 SPATA32Q96LK8 384 aa22.94■■□□□ 1.26
VPS53-210ENST00000571456 DNM3Q9UQ16 869 aa22.94■■□□□ 1.26
VPS53-210ENST00000571456 ZNF318Q5VUA4 2279 aa22.94■■□□□ 1.26
VPS53-210ENST00000571456 ZBTB42B2RXF5 422 aa22.93■■□□□ 1.26
VPS53-210ENST00000571456 CYP2C9P11712 490 aa22.93■■□□□ 1.26
VPS53-210ENST00000571456 NCLP19338 710 aaKnown RBP22.93■■□□□ 1.26
VPS53-210ENST00000571456 KLRC1P26715 233 aa22.93■■□□□ 1.26
VPS53-210ENST00000571456 IGBP1P78318 339 aa22.93■■□□□ 1.26
VPS53-210ENST00000571456 GRB10Q13322 594 aa22.93■■□□□ 1.26
VPS53-210ENST00000571456 CSPP1Q1MSJ5 1256 aa22.93■■□□□ 1.26
VPS53-210ENST00000571456 FOXD4L6Q3SYB3 417 aaPredicted RBP22.93■■□□□ 1.26
VPS53-210ENST00000571456 FOXD4L3Q6VB84 417 aaPredicted RBP22.93■■□□□ 1.26
VPS53-210ENST00000571456 GJD3Q8N144 294 aa22.93■■□□□ 1.26
VPS53-210ENST00000571456 CEP170P1Q96L14 293 aa22.93■■□□□ 1.26
VPS53-210ENST00000571456 CSRNP2Q9H175 543 aa22.93■■□□□ 1.26
VPS53-210ENST00000571456 WRAP73Q9P2S5 460 aaPredicted RBP22.93■■□□□ 1.26
VPS53-210ENST00000571456 MAFO75444 373 aaPredicted RBP22.92■■□□□ 1.26
VPS53-210ENST00000571456 DGAT1O75907 488 aa22.92■■□□□ 1.26
VPS53-210ENST00000571456 C22orf31O95567 290 aa22.92■■□□□ 1.26
VPS53-210ENST00000571456 ALADP13716 330 aa22.92■■□□□ 1.26
VPS53-210ENST00000571456 ME1P48163 572 aa22.92■■□□□ 1.26
VPS53-210ENST00000571456 DNM2P50570 870 aa22.92■■□□□ 1.26
VPS53-210ENST00000571456 MTERF2Q49AM1 385 aa22.92■■□□□ 1.26
VPS53-210ENST00000571456 XKR9Q5GH70 373 aa22.92■■□□□ 1.26
VPS53-210ENST00000571456 CTAGE1Q96RT6 745 aa22.92■■□□□ 1.26
VPS53-210ENST00000571456 PYM1Q9BRP8 204 aaKnown RBP22.92■■□□□ 1.26
VPS53-210ENST00000571456 MMTAG2Q9BU76 263 aaKnown RBP22.92■■□□□ 1.26
VPS53-210ENST00000571456 KCNH6Q9H252 994 aa22.92■■□□□ 1.26
VPS53-210ENST00000571456 KIAA1024Q9UPX6 916 aa22.92■■□□□ 1.26
VPS53-210ENST00000571456 COL4A4P53420 1690 aaPredicted RBP22.92■■□□□ 1.26
VPS53-210ENST00000571456 IGKV6-21A0A0C4DH24 114 aa22.91■■□□□ 1.26
VPS53-210ENST00000571456 RFC2P35250 354 aa22.91■■□□□ 1.26
VPS53-210ENST00000571456 RARRES1P49788 294 aa22.91■■□□□ 1.26
VPS53-210ENST00000571456 HIC1Q14526 733 aa22.91■■□□□ 1.26
VPS53-210ENST00000571456 IER5Q5VY09 327 aa22.91■■□□□ 1.26
VPS53-210ENST00000571456 FAM178BQ8IXR5 827 aa22.91■■□□□ 1.26
VPS53-210ENST00000571456 RASSF8Q8NHQ8 419 aa22.91■■□□□ 1.26
VPS53-210ENST00000571456 LEO1Q8WVC0 666 aaPredicted RBP22.91■■□□□ 1.26
VPS53-210ENST00000571456 TCP11Q8WWU5 503 aa22.91■■□□□ 1.26
VPS53-210ENST00000571456 FBXL18Q96ME1 805 aa22.91■■□□□ 1.26
VPS53-210ENST00000571456 CEP89Q96ST8 783 aa22.91■■□□□ 1.26
VPS53-210ENST00000571456 MAP7D2Q96T17 732 aa22.91■■□□□ 1.26
VPS53-210ENST00000571456 SLC9A7Q96T83 725 aa22.91■■□□□ 1.26
VPS53-210ENST00000571456 DHX33Q9H6R0 707 aaKnown RBP22.91■■□□□ 1.26
VPS53-210ENST00000571456 DDX19AQ9NUU7 478 aaKnown RBP22.91■■□□□ 1.26
VPS53-210ENST00000571456 TANC1Q9C0D5 1861 aa22.91■■□□□ 1.26
VPS53-210ENST00000571456 PP2D1A8MPX8 630 aa22.9■■□□□ 1.26
VPS53-210ENST00000571456 ARHGEF15O94989 841 aa22.9■■□□□ 1.26
VPS53-210ENST00000571456 EYA4O95677 639 aa22.9■■□□□ 1.26
VPS53-210ENST00000571456 POLGP54098 1239 aaPredicted RBP22.9■■□□□ 1.26
VPS53-210ENST00000571456 ZNF200P98182 395 aaPredicted RBP22.9■■□□□ 1.26
VPS53-210ENST00000571456 TRIM71Q2Q1W2 868 aaKnown RBP22.9■■□□□ 1.26
VPS53-210ENST00000571456 POTEGQ6S5H5 508 aa22.9■■□□□ 1.26
VPS53-210ENST00000571456 TRMT1LQ7Z2T5 733 aaKnown RBP22.9■■□□□ 1.26
VPS53-210ENST00000571456 PHOSPHO2Q8TCD6 241 aa22.9■■□□□ 1.26
VPS53-210ENST00000571456 KCND2Q9NZV8 630 aa22.9■■□□□ 1.26
VPS53-210ENST00000571456 STK17AQ9UEE5 414 aa22.9■■□□□ 1.26
VPS53-210ENST00000571456 TRIOO75962 3097 aa22.9■■□□□ 1.26
VPS53-210ENST00000571456 ARHGEF35A5YM69 484 aa22.89■■□□□ 1.25
VPS53-210ENST00000571456 M0QZ92 97 aa22.89■■□□□ 1.25
VPS53-210ENST00000571456 LPXNO60711 386 aa22.89■■□□□ 1.25
VPS53-210ENST00000571456 ACTN1P12814 892 aa22.89■■□□□ 1.25
VPS53-210ENST00000571456 SELPP16109 830 aa22.89■■□□□ 1.25
VPS53-210ENST00000571456 CDC25AP30304 524 aa22.89■■□□□ 1.25
VPS53-210ENST00000571456 TMEM119Q4V9L6 283 aa22.89■■□□□ 1.25
VPS53-210ENST00000571456 ADALQ6DHV7 355 aa22.89■■□□□ 1.25
VPS53-210ENST00000571456 CCDC73Q6ZRK6 1079 aa22.89■■□□□ 1.25
VPS53-210ENST00000571456 DEFB128Q7Z7B8 93 aa22.89■■□□□ 1.25
VPS53-210ENST00000571456 MCPH1Q8NEM0 835 aa22.89■■□□□ 1.25
VPS53-210ENST00000571456 TRAPPC12Q8WVT3 735 aa22.89■■□□□ 1.25
VPS53-210ENST00000571456 PCDHA7Q9UN72 937 aa22.89■■□□□ 1.25
VPS53-210ENST00000571456 SQORQ9Y6N5 450 aa22.89■■□□□ 1.25
VPS53-210ENST00000571456 ZDBF2Q9HCK1 2354 aa22.89■■□□□ 1.25
VPS53-210ENST00000571456 CKBP12277 381 aa22.88■■□□□ 1.25
VPS53-210ENST00000571456 SSTR3P32745 418 aaPredicted RBP22.88■■□□□ 1.25
VPS53-210ENST00000571456 THPOP40225 353 aa22.88■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms