RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 BLZF1Q9H2G9 400 aa22.86■■□□□ 1.25
CLN3-212ENST00000564574 KCNG1Q9UIX4 513 aa22.86■■□□□ 1.25
CLN3-212ENST00000564574 NOD1Q9Y239 953 aa22.86■■□□□ 1.25
CLN3-212ENST00000564574 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP22.85■■□□□ 1.25
CLN3-212ENST00000564574 NPHP3-ACAD11A0A0J9YXS1 232 aa22.85■■□□□ 1.25
CLN3-212ENST00000564574 FRMD3A2A2Y4 597 aa22.85■■□□□ 1.25
CLN3-212ENST00000564574 ASAP2O43150 1006 aa22.85■■□□□ 1.25
CLN3-212ENST00000564574 FAM13AO94988 1023 aa22.85■■□□□ 1.25
CLN3-212ENST00000564574 GAP43P17677 238 aa22.85■■□□□ 1.25
CLN3-212ENST00000564574 ARL2P36404 184 aa22.85■■□□□ 1.25
CLN3-212ENST00000564574 ZNF131P52739 623 aa22.85■■□□□ 1.25
CLN3-212ENST00000564574 CDC42EP1Q00587 391 aa22.85■■□□□ 1.25
CLN3-212ENST00000564574 RAD51AP2Q09MP3 1159 aa22.85■■□□□ 1.25
CLN3-212ENST00000564574 MAPK7Q13164 816 aa22.85■■□□□ 1.25
CLN3-212ENST00000564574 PNOCQ13519 176 aa22.85■■□□□ 1.25
CLN3-212ENST00000564574 MAEAQ7L5Y9 396 aa22.85■■□□□ 1.25
CLN3-212ENST00000564574 ANKRD33Q7Z3H0 272 aa22.85■■□□□ 1.25
CLN3-212ENST00000564574 FAM126BQ8IXS8 530 aa22.85■■□□□ 1.25
CLN3-212ENST00000564574 ZNF710Q8N1W2 664 aa22.85■■□□□ 1.25
CLN3-212ENST00000564574 NME8Q8N427 588 aa22.85■■□□□ 1.25
CLN3-212ENST00000564574 LRRC71Q8N4P6 559 aa22.85■■□□□ 1.25
CLN3-212ENST00000564574 PSPC1Q8WXF1 523 aaKnown RBP22.85■■□□□ 1.25
CLN3-212ENST00000564574 CCDC47Q96A33 483 aaKnown RBP22.85■■□□□ 1.25
CLN3-212ENST00000564574 TMEM143Q96AN5 459 aa22.85■■□□□ 1.25
CLN3-212ENST00000564574 TOX2Q96NM4 488 aa22.85■■□□□ 1.25
CLN3-212ENST00000564574 POLR3FQ9H1D9 316 aaPredicted RBP22.85■■□□□ 1.25
CLN3-212ENST00000564574 COL4A3BPQ9Y5P4 624 aa22.85■■□□□ 1.25
CLN3-212ENST00000564574 B4GALT4O60513 344 aa22.84■■□□□ 1.25
CLN3-212ENST00000564574 IDEP14735 1019 aa22.84■■□□□ 1.25
CLN3-212ENST00000564574 CLCN3P51790 818 aa22.84■■□□□ 1.25
CLN3-212ENST00000564574 ATN1P54259 1190 aaPredicted RBP22.84■■□□□ 1.25
CLN3-212ENST00000564574 MKRN4PQ13434 485 aaPredicted RBP22.84■■□□□ 1.25
CLN3-212ENST00000564574 MXD4Q14582 209 aaPredicted RBP22.84■■□□□ 1.25
CLN3-212ENST00000564574 CAMK4Q16566 473 aa22.84■■□□□ 1.25
CLN3-212ENST00000564574 RPAINQ86UA6 219 aa22.84■■□□□ 1.25
CLN3-212ENST00000564574 RSPH3Q86UC2 560 aa22.84■■□□□ 1.25
CLN3-212ENST00000564574 DAW1Q8N136 415 aa22.84■■□□□ 1.25
CLN3-212ENST00000564574 PARVGQ9HBI0 331 aa22.84■■□□□ 1.25
CLN3-212ENST00000564574 GPRC5CQ9NQ84 441 aa22.84■■□□□ 1.25
CLN3-212ENST00000564574 TRMT13Q9NUP7 481 aaKnown RBP22.84■■□□□ 1.25
CLN3-212ENST00000564574 LARSQ9P2J5 1176 aaKnown RBP22.84■■□□□ 1.25
CLN3-212ENST00000564574 SUCLA2Q9P2R7 463 aaPredicted RBP22.84■■□□□ 1.25
CLN3-212ENST00000564574 SEL1LQ9UBV2 794 aa22.84■■□□□ 1.25
CLN3-212ENST00000564574 CAND2O75155 1236 aa22.83■■□□□ 1.25
CLN3-212ENST00000564574 CD4P01730 458 aa22.83■■□□□ 1.25
CLN3-212ENST00000564574 RPN1P04843 607 aaKnown RBP22.83■■□□□ 1.25
CLN3-212ENST00000564574 CASP1P29466 404 aa22.83■■□□□ 1.25
CLN3-212ENST00000564574 CACNB1Q02641 598 aaPredicted RBP22.83■■□□□ 1.25
CLN3-212ENST00000564574 PPP2R5AQ15172 486 aa22.83■■□□□ 1.25
CLN3-212ENST00000564574 RUFY4Q6ZNE9 571 aa22.83■■□□□ 1.25
CLN3-212ENST00000564574 KIAA0319LQ8IZA0 1049 aa22.83■■□□□ 1.25
CLN3-212ENST00000564574 SPATA20Q8TB22 786 aa22.83■■□□□ 1.25
CLN3-212ENST00000564574 SMARCE1Q969G3 411 aa22.83■■□□□ 1.25
CLN3-212ENST00000564574 ZBTB10Q96DT7 871 aa22.83■■□□□ 1.25
CLN3-212ENST00000564574 IFT74Q96LB3 600 aa22.83■■□□□ 1.25
CLN3-212ENST00000564574 GSDMAQ96QA5 445 aa22.83■■□□□ 1.25
CLN3-212ENST00000564574 CTAGE1Q96RT6 745 aa22.83■■□□□ 1.25
CLN3-212ENST00000564574 PANK4Q9NVE7 773 aa22.83■■□□□ 1.25
CLN3-212ENST00000564574 AKT3Q9Y243 479 aa22.83■■□□□ 1.25
CLN3-212ENST00000564574 DCDC2CA8MYV0 355 aa22.82■■□□□ 1.24
CLN3-212ENST00000564574 RSPH10B2B2RC85 870 aa22.82■■□□□ 1.24
CLN3-212ENST00000564574 KLRC4O43908 158 aa22.82■■□□□ 1.24
CLN3-212ENST00000564574 RSPH10BP0C881 870 aa22.82■■□□□ 1.24
CLN3-212ENST00000564574 PLS3P13797 630 aa22.82■■□□□ 1.24
CLN3-212ENST00000564574 DRP2Q13474 957 aa22.82■■□□□ 1.24
CLN3-212ENST00000564574 KCNB1Q14721 858 aa22.82■■□□□ 1.24
CLN3-212ENST00000564574 NT5DC1Q5TFE4 455 aa22.82■■□□□ 1.24
CLN3-212ENST00000564574 CAVIN1Q6NZI2 390 aaKnown RBP22.82■■□□□ 1.24
CLN3-212ENST00000564574 CCDC155Q8N6L0 562 aa22.82■■□□□ 1.24
CLN3-212ENST00000564574 SLC17A8Q8NDX2 589 aa22.82■■□□□ 1.24
CLN3-212ENST00000564574 PRPF31Q8WWY3 499 aaKnown RBP22.82■■□□□ 1.24
CLN3-212ENST00000564574 FAM49AQ9H0Q0 323 aaPredicted RBP22.82■■□□□ 1.24
CLN3-212ENST00000564574 TRPV6Q9H1D0 765 aa22.82■■□□□ 1.24
CLN3-212ENST00000564574 RMND1Q9NWS8 449 aa22.82■■□□□ 1.24
CLN3-212ENST00000564574 TMEM63CQ9P1W3 806 aa22.82■■□□□ 1.24
CLN3-212ENST00000564574 KIAA1468Q9P260 1216 aa22.82■■□□□ 1.24
CLN3-212ENST00000564574 PCDHA5Q9Y5H7 936 aa22.82■■□□□ 1.24
CLN3-212ENST00000564574 GLRA2P23416 452 aa22.81■■□□□ 1.24
CLN3-212ENST00000564574 NAMPTP43490 491 aa22.81■■□□□ 1.24
CLN3-212ENST00000564574 SARSP49591 514 aaKnown RBP22.81■■□□□ 1.24
CLN3-212ENST00000564574 POU5F1BQ06416 359 aa22.81■■□□□ 1.24
CLN3-212ENST00000564574 COASYQ13057 564 aa22.81■■□□□ 1.24
CLN3-212ENST00000564574 DMP1Q13316 513 aaPredicted RBP22.81■■□□□ 1.24
CLN3-212ENST00000564574 TFDP1Q14186 410 aa22.81■■□□□ 1.24
CLN3-212ENST00000564574 TRIM60Q495X7 471 aa22.81■■□□□ 1.24
CLN3-212ENST00000564574 RBM43Q6ZSC3 357 aaKnown RBP22.81■■□□□ 1.24
CLN3-212ENST00000564574 MYCT1Q8N699 235 aa22.81■■□□□ 1.24
CLN3-212ENST00000564574 ASAP3Q8TDY4 903 aa22.81■■□□□ 1.24
CLN3-212ENST00000564574 DNAJB3Q8WWF6 145 aa22.81■■□□□ 1.24
CLN3-212ENST00000564574 SPIRE2Q8WWL2 714 aa22.81■■□□□ 1.24
CLN3-212ENST00000564574 GTPBP4Q9BZE4 634 aaKnown RBP22.81■■□□□ 1.24
CLN3-212ENST00000564574 ZHX3Q9H4I2 956 aa22.81■■□□□ 1.24
CLN3-212ENST00000564574 EXOC1Q9NV70 894 aa22.81■■□□□ 1.24
CLN3-212ENST00000564574 PQBP1O60828 265 aaKnown RBP22.8■■□□□ 1.24
CLN3-212ENST00000564574 MAPTP10636 758 aaKnown RBP22.8■■□□□ 1.24
CLN3-212ENST00000564574 SMTNP53814 917 aa22.8■■□□□ 1.24
CLN3-212ENST00000564574 EHHADHQ08426 723 aa22.8■■□□□ 1.24
CLN3-212ENST00000564574 RBL2Q08999 1139 aa22.8■■□□□ 1.24
CLN3-212ENST00000564574 LAMTOR4Q0VGL1 99 aa22.8■■□□□ 1.24
CLN3-212ENST00000564574 PSMD2Q13200 908 aa22.8■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms