RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 TGFBRAP1Q8WUH2 860 aa5.98□□□□□ -1.45
VPS35P1-201ENST00000563400 LMBR1Q8WVP7 490 aa5.98□□□□□ -1.45
VPS35P1-201ENST00000563400 KCTD13Q8WZ19 329 aa5.98□□□□□ -1.45
VPS35P1-201ENST00000563400 TTC9Q92623 222 aa5.98□□□□□ -1.45
VPS35P1-201ENST00000563400 SNX21Q969T3 373 aa5.98□□□□□ -1.45
VPS35P1-201ENST00000563400 LRRC59Q96AG4 307 aaKnown RBP5.98□□□□□ -1.45
VPS35P1-201ENST00000563400 RMDN3Q96TC7 470 aa5.98□□□□□ -1.45
VPS35P1-201ENST00000563400 POP1Q99575 1024 aaKnown RBP5.98□□□□□ -1.45
VPS35P1-201ENST00000563400 LRFN3Q9BTN0 628 aa5.98□□□□□ -1.45
VPS35P1-201ENST00000563400 LMAN2LQ9H0V9 348 aa5.98□□□□□ -1.45
VPS35P1-201ENST00000563400 UBN1Q9NPG3 1134 aa5.98□□□□□ -1.45
VPS35P1-201ENST00000563400 CACNA2D2Q9NY47 1150 aa5.98□□□□□ -1.45
VPS35P1-201ENST00000563400 NFKBIL1Q9UBC1 381 aaPredicted RBP5.98□□□□□ -1.45
VPS35P1-201ENST00000563400 PPARGC1AQ9UBK2 798 aaKnown RBP5.98□□□□□ -1.45
VPS35P1-201ENST00000563400 B4GALT6Q9UBX8 382 aa5.98□□□□□ -1.45
VPS35P1-201ENST00000563400 AKT3Q9Y243 479 aa5.98□□□□□ -1.45
VPS35P1-201ENST00000563400 SH3BP1Q9Y3L3 701 aa5.98□□□□□ -1.45
VPS35P1-201ENST00000563400 ZNF451Q9Y4E5 1061 aa5.98□□□□□ -1.45
VPS35P1-201ENST00000563400 TACC3Q9Y6A5 838 aa5.98□□□□□ -1.45
VPS35P1-201ENST00000563400 BRD4O60885 1362 aaPredicted RBP5.98□□□□□ -1.45
VPS35P1-201ENST00000563400 GPRASP1Q5JY77 1395 aa5.98□□□□□ -1.45
VPS35P1-201ENST00000563400 PIK3C2GO75747 1445 aa5.98□□□□□ -1.45
VPS35P1-201ENST00000563400 DCCP43146 1447 aa5.98□□□□□ -1.45
VPS35P1-201ENST00000563400 SETBP1Q9Y6X0 1596 aa5.98□□□□□ -1.45
VPS35P1-201ENST00000563400 POLR1AO95602 1720 aaPredicted RBP5.98□□□□□ -1.45
VPS35P1-201ENST00000563400 FSD2A1L4K1 749 aa5.97□□□□□ -1.45
VPS35P1-201ENST00000563400 J3QW42 95 aa5.97□□□□□ -1.45
VPS35P1-201ENST00000563400 NOP56O00567 594 aaKnown RBP5.97□□□□□ -1.45
VPS35P1-201ENST00000563400 B3GALT2O43825 422 aa5.97□□□□□ -1.45
VPS35P1-201ENST00000563400 VAMP4O75379 141 aa5.97□□□□□ -1.45
VPS35P1-201ENST00000563400 CSTBP04080 98 aaKnown RBP5.97□□□□□ -1.45
VPS35P1-201ENST00000563400 MTHFD1P11586 935 aaKnown RBP5.97□□□□□ -1.45
VPS35P1-201ENST00000563400 GYS1P13807 737 aa5.97□□□□□ -1.45
VPS35P1-201ENST00000563400 RAC2P15153 192 aa5.97□□□□□ -1.45
VPS35P1-201ENST00000563400 ELNP15502 786 aa5.97□□□□□ -1.45
VPS35P1-201ENST00000563400 C5AR1P21730 350 aa5.97□□□□□ -1.45
VPS35P1-201ENST00000563400 PDIA3P30101 505 aaKnown RBP5.97□□□□□ -1.45
VPS35P1-201ENST00000563400 KCNJ6P48051 423 aa5.97□□□□□ -1.45
VPS35P1-201ENST00000563400 TDO2P48775 406 aa5.97□□□□□ -1.45
VPS35P1-201ENST00000563400 FKBP15Q5T1M5 1219 aa5.97□□□□□ -1.45
VPS35P1-201ENST00000563400 CREB3L3Q68CJ9 461 aa5.97□□□□□ -1.45
VPS35P1-201ENST00000563400 ZNF449Q6P9G9 518 aa5.97□□□□□ -1.45
VPS35P1-201ENST00000563400 NPHP3Q7Z494 1330 aa5.97□□□□□ -1.45
VPS35P1-201ENST00000563400 CD163Q86VB7 1156 aa5.97□□□□□ -1.45
VPS35P1-201ENST00000563400 WFDC8Q8IUA0 241 aa5.97□□□□□ -1.45
VPS35P1-201ENST00000563400 DTWD1Q8N5C7 304 aa5.97□□□□□ -1.45
VPS35P1-201ENST00000563400 PCYOX1LQ8NBM8 494 aa5.97□□□□□ -1.45
VPS35P1-201ENST00000563400 APPL2Q8NEU8 664 aa5.97□□□□□ -1.45
VPS35P1-201ENST00000563400 CENPIQ92674 756 aaPredicted RBP5.97□□□□□ -1.45
VPS35P1-201ENST00000563400 ARL8AQ96BM9 186 aa5.97□□□□□ -1.45
VPS35P1-201ENST00000563400 ACSF2Q96CM8 615 aaPredicted RBP5.97□□□□□ -1.45
VPS35P1-201ENST00000563400 TBC1D31Q96DN5 1066 aa5.97□□□□□ -1.45
VPS35P1-201ENST00000563400 DHRS1Q96LJ7 313 aa5.97□□□□□ -1.45
VPS35P1-201ENST00000563400 ZSCAN31Q96LW9 406 aaPredicted RBP5.97□□□□□ -1.45
VPS35P1-201ENST00000563400 SLC2A13Q96QE2 648 aa5.97□□□□□ -1.45
VPS35P1-201ENST00000563400 PRAM1Q96QH2 718 aa5.97□□□□□ -1.45
VPS35P1-201ENST00000563400 PBX4Q9BYU1 374 aa5.97□□□□□ -1.45
VPS35P1-201ENST00000563400 NUP62CLQ9H1M0 184 aa5.97□□□□□ -1.45
VPS35P1-201ENST00000563400 YTHDC2Q9H6S0 1430 aaKnown RBP5.97□□□□□ -1.45
VPS35P1-201ENST00000563400 CABP5Q9NP86 173 aa5.97□□□□□ -1.45
VPS35P1-201ENST00000563400 CCM2LQ9NUG4 571 aaPredicted RBP5.97□□□□□ -1.45
VPS35P1-201ENST00000563400 CAMSAP3Q9P1Y5 1249 aaPredicted RBP5.97□□□□□ -1.45
VPS35P1-201ENST00000563400 NAGPAQ9UK23 515 aa5.97□□□□□ -1.45
VPS35P1-201ENST00000563400 NINLQ9Y2I6 1382 aa5.97□□□□□ -1.45
VPS35P1-201ENST00000563400 EMC9Q9Y3B6 208 aa5.97□□□□□ -1.45
VPS35P1-201ENST00000563400 PCDHA11Q9Y5I1 949 aa5.97□□□□□ -1.45
VPS35P1-201ENST00000563400 CLTCL1P53675 1640 aa5.96□□□□□ -1.45
VPS35P1-201ENST00000563400 PTCH1Q13635 1447 aa5.96□□□□□ -1.46
VPS35P1-201ENST00000563400 TMEM94Q12767 1356 aa5.96□□□□□ -1.46
VPS35P1-201ENST00000563400 ZNF335Q9H4Z2 1342 aaPredicted RBP5.96□□□□□ -1.46
VPS35P1-201ENST00000563400 PTPDC1A2A3K4 754 aa5.96□□□□□ -1.46
VPS35P1-201ENST00000563400 LCHNA4D1U4 455 aa5.96□□□□□ -1.46
VPS35P1-201ENST00000563400 A6NLC8 198 aa5.96□□□□□ -1.46
VPS35P1-201ENST00000563400 FAM177BA6PVY3 158 aa5.96□□□□□ -1.46
VPS35P1-201ENST00000563400 RHPN2P1A8MT19 583 aa5.96□□□□□ -1.46
VPS35P1-201ENST00000563400 ZBTB42B2RXF5 422 aa5.96□□□□□ -1.46
VPS35P1-201ENST00000563400 C9orf172C9J069 976 aa5.96□□□□□ -1.46
VPS35P1-201ENST00000563400 UBOX5O94941 541 aa5.96□□□□□ -1.46
VPS35P1-201ENST00000563400 KCNH1O95259 989 aa5.96□□□□□ -1.46
VPS35P1-201ENST00000563400 DDX58O95786 925 aaKnown RBP5.96□□□□□ -1.46
VPS35P1-201ENST00000563400 DNTTP04053 509 aa5.96□□□□□ -1.46
VPS35P1-201ENST00000563400 HNRNPCP07910 306 aaKnown RBP eCLIP5.96□□□□□ -1.46
VPS35P1-201ENST00000563400 GSTP1P09211 210 aaKnown RBP5.96□□□□□ -1.46
VPS35P1-201ENST00000563400 HOXD8P13378 290 aaPredicted RBP5.96□□□□□ -1.46
VPS35P1-201ENST00000563400 OCRLQ01968 901 aa5.96□□□□□ -1.46
VPS35P1-201ENST00000563400 NRG1Q02297 640 aaPredicted RBP5.96□□□□□ -1.46
VPS35P1-201ENST00000563400 COL9A3Q14050 684 aaPredicted RBP5.96□□□□□ -1.46
VPS35P1-201ENST00000563400 CLEC16AQ2KHT3 1053 aa5.96□□□□□ -1.46
VPS35P1-201ENST00000563400 FAM205BPQ63HN1 556 aa5.96□□□□□ -1.46
VPS35P1-201ENST00000563400 TMEM132EQ6IEE7 984 aa5.96□□□□□ -1.46
VPS35P1-201ENST00000563400 DENND5AQ6IQ26 1287 aa5.96□□□□□ -1.46
VPS35P1-201ENST00000563400 HFE2Q6ZVN8 426 aa5.96□□□□□ -1.46
VPS35P1-201ENST00000563400 BRINP3Q76B58 766 aa5.96□□□□□ -1.46
VPS35P1-201ENST00000563400 VN1R5Q7Z5H4 357 aa5.96□□□□□ -1.46
VPS35P1-201ENST00000563400 DENND1CQ8IV53 801 aa5.96□□□□□ -1.46
VPS35P1-201ENST00000563400 NRSN1Q8IZ57 195 aa5.96□□□□□ -1.46
VPS35P1-201ENST00000563400 BSNDQ8WZ55 320 aa5.96□□□□□ -1.46
VPS35P1-201ENST00000563400 MVB12AQ96EY5 273 aa5.96□□□□□ -1.46
VPS35P1-201ENST00000563400 ACSBG1Q96GR2 724 aa5.96□□□□□ -1.46
VPS35P1-201ENST00000563400 C1orf159Q96HA4 380 aa5.96□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms