RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 PTPN5P54829 565 aa21.45■■□□□ 1.02
VPS35-202ENST00000561713 PRKCEQ02156 737 aa21.45■■□□□ 1.02
VPS35-202ENST00000561713 SLC24A5Q71RS6 500 aa21.45■■□□□ 1.02
VPS35-202ENST00000561713 FAM228AQ86W67 206 aa21.45■■□□□ 1.02
VPS35-202ENST00000561713 SUGP1Q8IWZ8 645 aaKnown RBP21.45■■□□□ 1.02
VPS35-202ENST00000561713 THNSL1Q8IYQ7 743 aa21.45■■□□□ 1.02
VPS35-202ENST00000561713 LRRC71Q8N4P6 559 aa21.45■■□□□ 1.02
VPS35-202ENST00000561713 COLGALT1Q8NBJ5 622 aa21.45■■□□□ 1.02
VPS35-202ENST00000561713 BBXQ8WY36 941 aaPredicted RBP21.45■■□□□ 1.02
VPS35-202ENST00000561713 SUSD6Q92537 303 aa21.45■■□□□ 1.02
VPS35-202ENST00000561713 UNC45AQ9H3U1 944 aa21.45■■□□□ 1.02
VPS35-202ENST00000561713 C9IYK1 514 aa21.44■■□□□ 1.02
VPS35-202ENST00000561713 FGFR1P11362 822 aa21.44■■□□□ 1.02
VPS35-202ENST00000561713 TCF15Q12870 199 aa21.44■■□□□ 1.02
VPS35-202ENST00000561713 NPY5RQ15761 445 aa21.44■■□□□ 1.02
VPS35-202ENST00000561713 DUSP6Q16828 381 aa21.44■■□□□ 1.02
VPS35-202ENST00000561713 LRCH2Q5VUJ6 765 aa21.44■■□□□ 1.02
VPS35-202ENST00000561713 FBXL6Q8N531 539 aa21.44■■□□□ 1.02
VPS35-202ENST00000561713 DISC1Q9NRI5 854 aa21.44■■□□□ 1.02
VPS35-202ENST00000561713 C1orf112Q9NSG2 853 aa21.44■■□□□ 1.02
VPS35-202ENST00000561713 PDRG1Q9NUG6 133 aa21.44■■□□□ 1.02
VPS35-202ENST00000561713 PCDHA4Q9UN74 947 aa21.44■■□□□ 1.02
VPS35-202ENST00000561713 DMDP11532 3685 aa21.44■■□□□ 1.02
VPS35-202ENST00000561713 TMEM150BA6NC51 233 aa21.43■■□□□ 1.02
VPS35-202ENST00000561713 FSCN2O14926 492 aa21.43■■□□□ 1.02
VPS35-202ENST00000561713 DEXIO95424 95 aa21.43■■□□□ 1.02
VPS35-202ENST00000561713 OATP04181 439 aa21.43■■□□□ 1.02
VPS35-202ENST00000561713 ATF7P17544 494 aaPredicted RBP21.43■■□□□ 1.02
VPS35-202ENST00000561713 SIGLEC14Q08ET2 396 aa21.43■■□□□ 1.02
VPS35-202ENST00000561713 SLC5A5Q92911 643 aa21.43■■□□□ 1.02
VPS35-202ENST00000561713 CDCA3Q99618 268 aaPredicted RBP21.43■■□□□ 1.02
VPS35-202ENST00000561713 CWH43Q9H720 699 aa21.43■■□□□ 1.02
VPS35-202ENST00000561713 SH3GLB2Q9NR46 395 aa21.43■■□□□ 1.02
VPS35-202ENST00000561713 KCNJ14Q9UNX9 436 aa21.43■■□□□ 1.02
VPS35-202ENST00000561713 AKT3Q9Y243 479 aa21.43■■□□□ 1.02
VPS35-202ENST00000561713 ZDBF2Q9HCK1 2354 aa21.43■■□□□ 1.02
VPS35-202ENST00000561713 GPR182O15218 404 aa21.42■■□□□ 1.02
VPS35-202ENST00000561713 BLIDQ8IZY5 108 aa21.42■■□□□ 1.02
VPS35-202ENST00000561713 ASIC4Q96FT7 647 aa21.42■■□□□ 1.02
VPS35-202ENST00000561713 TEKT3Q9BXF9 490 aa21.42■■□□□ 1.02
VPS35-202ENST00000561713 TM6SF1Q9BZW5 370 aa21.42■■□□□ 1.02
VPS35-202ENST00000561713 S1PR5Q9H228 398 aa21.42■■□□□ 1.02
VPS35-202ENST00000561713 GJB4Q9NTQ9 266 aa21.42■■□□□ 1.02
VPS35-202ENST00000561713 GPR32O75388 356 aa21.41■■□□□ 1.02
VPS35-202ENST00000561713 VCPP55072 806 aaKnown RBP21.41■■□□□ 1.02
VPS35-202ENST00000561713 FAM189BP81408 668 aa21.41■■□□□ 1.02
VPS35-202ENST00000561713 SCRN1Q12765 414 aa21.41■■□□□ 1.02
VPS35-202ENST00000561713 KCNC3Q14003 757 aa21.41■■□□□ 1.02
VPS35-202ENST00000561713 PLPP4Q5VZY2 271 aa21.41■■□□□ 1.02
VPS35-202ENST00000561713 FAM43BQ6ZT52 329 aaPredicted RBP21.41■■□□□ 1.02
VPS35-202ENST00000561713 ZNF274Q96GC6 653 aaPredicted RBP21.41■■□□□ 1.02
VPS35-202ENST00000561713 FAM167AQ96KS9 214 aa21.41■■□□□ 1.02
VPS35-202ENST00000561713 PRRX2Q99811 253 aa21.41■■□□□ 1.02
VPS35-202ENST00000561713 SH2D3AQ9BRG2 576 aa21.41■■□□□ 1.02
VPS35-202ENST00000561713 APOL5Q9BWW9 433 aa21.41■■□□□ 1.02
VPS35-202ENST00000561713 ATP6V0A4Q9HBG4 840 aa21.41■■□□□ 1.02
VPS35-202ENST00000561713 RNF216Q9NWF9 866 aaPredicted RBP21.41■■□□□ 1.02
VPS35-202ENST00000561713 TMEM161AQ9NX61 479 aa21.41■■□□□ 1.02
VPS35-202ENST00000561713 KMT2EQ8IZD2 1858 aa21.41■■□□□ 1.02
VPS35-202ENST00000561713 M0R2N6 131 aa21.4■■□□□ 1.02
VPS35-202ENST00000561713 EPB41L2O43491 1005 aaKnown RBP21.4■■□□□ 1.02
VPS35-202ENST00000561713 SLC37A4O43826 429 aa21.4■■□□□ 1.02
VPS35-202ENST00000561713 TECP42680 631 aa21.4■■□□□ 1.02
VPS35-202ENST00000561713 CRYBB1P53674 252 aaPredicted RBP21.4■■□□□ 1.02
VPS35-202ENST00000561713 INF2Q27J81 1249 aa21.4■■□□□ 1.02
VPS35-202ENST00000561713 ODR4Q5SWX8 454 aa21.4■■□□□ 1.02
VPS35-202ENST00000561713 PDE12Q6L8Q7 609 aaKnown RBP21.4■■□□□ 1.02
VPS35-202ENST00000561713 EFCAB12Q6NXP0 572 aa21.4■■□□□ 1.02
VPS35-202ENST00000561713 ANKRD54Q6NXT1 300 aa21.4■■□□□ 1.02
VPS35-202ENST00000561713 LLGL2Q6P1M3 1020 aa21.4■■□□□ 1.02
VPS35-202ENST00000561713 TMEM184AQ6ZMB5 413 aa21.4■■□□□ 1.02
VPS35-202ENST00000561713 LINC01465Q8N7H1 131 aa21.4■■□□□ 1.02
VPS35-202ENST00000561713 MAP7D2Q96T17 732 aa21.4■■□□□ 1.02
VPS35-202ENST00000561713 SEPT9Q9UHD8 586 aaPredicted RBP21.4■■□□□ 1.02
VPS35-202ENST00000561713 CEP131Q9UPN4 1083 aa21.4■■□□□ 1.02
VPS35-202ENST00000561713 FSD2A1L4K1 749 aa21.39■■□□□ 1.01
VPS35-202ENST00000561713 HIDE1A8MVS5 230 aa21.39■■□□□ 1.01
VPS35-202ENST00000561713 LAG3P18627 525 aa21.39■■□□□ 1.01
VPS35-202ENST00000561713 SP100P23497 879 aaPredicted RBP21.39■■□□□ 1.01
VPS35-202ENST00000561713 USP11P51784 963 aa21.39■■□□□ 1.01
VPS35-202ENST00000561713 JAK3P52333 1124 aa21.39■■□□□ 1.01
VPS35-202ENST00000561713 NLRP11P59045 1033 aaKnown RBP21.39■■□□□ 1.01
VPS35-202ENST00000561713 DRP2Q13474 957 aa21.39■■□□□ 1.01
VPS35-202ENST00000561713 DSC3Q14574 896 aa21.39■■□□□ 1.01
VPS35-202ENST00000561713 PTPN21Q16825 1174 aa21.39■■□□□ 1.01
VPS35-202ENST00000561713 SYCE2Q6PIF2 218 aa21.39■■□□□ 1.01
VPS35-202ENST00000561713 LRRC55Q6ZSA7 311 aa21.39■■□□□ 1.01
VPS35-202ENST00000561713 MIER3Q7Z3K6 550 aa21.39■■□□□ 1.01
VPS35-202ENST00000561713 DAGLBQ8NCG7 672 aa21.39■■□□□ 1.01
VPS35-202ENST00000561713 MRPS27Q92552 414 aaKnown RBP21.39■■□□□ 1.01
VPS35-202ENST00000561713 RIT2Q99578 217 aa21.39■■□□□ 1.01
VPS35-202ENST00000561713 TCF25Q9BQ70 676 aa21.39■■□□□ 1.01
VPS35-202ENST00000561713 ENTPD7Q9NQZ7 604 aa21.39■■□□□ 1.01
VPS35-202ENST00000561713 FAM86C1Q9NVL1 165 aa21.39■■□□□ 1.01
VPS35-202ENST00000561713 TPCN1Q9ULQ1 816 aa21.39■■□□□ 1.01
VPS35-202ENST00000561713 LZTS1Q9Y250 596 aa21.39■■□□□ 1.01
VPS35-202ENST00000561713 PSMD10O75832 226 aa21.38■■□□□ 1.01
VPS35-202ENST00000561713 FGFR4P22455 802 aa21.38■■□□□ 1.01
VPS35-202ENST00000561713 PBX3P40426 434 aa21.38■■□□□ 1.01
VPS35-202ENST00000561713 PLCB3Q01970 1234 aa21.38■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms