RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 FAM205CA6NFA0 338 aa11.49□□□□□ -0.57
LDLR-214ENST00000560628 NCK2O43639 380 aa11.49□□□□□ -0.57
LDLR-214ENST00000560628 MARCH6O60337 910 aa11.49□□□□□ -0.57
LDLR-214ENST00000560628 CCNT1O60563 726 aaKnown RBP11.49□□□□□ -0.57
LDLR-214ENST00000560628 LARGE1O95461 756 aa11.49□□□□□ -0.57
LDLR-214ENST00000560628 FDPSP14324 419 aaKnown RBP11.49□□□□□ -0.57
LDLR-214ENST00000560628 DARSP14868 501 aaKnown RBP11.49□□□□□ -0.57
LDLR-214ENST00000560628 ZSCAN20P17040 1043 aaPredicted RBP11.49□□□□□ -0.57
LDLR-214ENST00000560628 SSTR3P32745 418 aaPredicted RBP11.49□□□□□ -0.57
LDLR-214ENST00000560628 FOSBP53539 338 aa11.49□□□□□ -0.57
LDLR-214ENST00000560628 COL19A1Q14993 1142 aa11.49□□□□□ -0.57
LDLR-214ENST00000560628 ME3Q16798 604 aa11.49□□□□□ -0.57
LDLR-214ENST00000560628 NAALADL2Q58DX5 795 aa11.49□□□□□ -0.57
LDLR-214ENST00000560628 PLA2G4FQ68DD2 849 aa11.49□□□□□ -0.57
LDLR-214ENST00000560628 ADGRD2Q7Z7M1 963 aa11.49□□□□□ -0.57
LDLR-214ENST00000560628 NEK8Q86SG6 692 aa11.49□□□□□ -0.57
LDLR-214ENST00000560628 RBM23Q86U06 439 aaKnown RBP11.49□□□□□ -0.57
LDLR-214ENST00000560628 GJD3Q8N144 294 aa11.49□□□□□ -0.57
LDLR-214ENST00000560628 MICAL1Q8TDZ2 1067 aa11.49□□□□□ -0.57
LDLR-214ENST00000560628 CEP89Q96ST8 783 aa11.49□□□□□ -0.57
LDLR-214ENST00000560628 RNF216Q9NWF9 866 aaPredicted RBP11.49□□□□□ -0.57
LDLR-214ENST00000560628 TMEM161AQ9NX61 479 aa11.49□□□□□ -0.57
LDLR-214ENST00000560628 PCDHB12Q9Y5F1 795 aa11.49□□□□□ -0.57
LDLR-214ENST00000560628 STK36Q9NRP7 1315 aa11.49□□□□□ -0.57
LDLR-214ENST00000560628 NCOR1O75376 2440 aa11.49□□□□□ -0.57
LDLR-214ENST00000560628 XIRP2A4UGR9 3374 aa11.48□□□□□ -0.57
LDLR-214ENST00000560628 A0A087WZ62 844 aa11.48□□□□□ -0.57
LDLR-214ENST00000560628 SEC24BO95487 1268 aa11.48□□□□□ -0.57
LDLR-214ENST00000560628 DNM2P50570 870 aa11.48□□□□□ -0.57
LDLR-214ENST00000560628 NEK4P51957 841 aa11.48□□□□□ -0.57
LDLR-214ENST00000560628 NPEPPSP55786 919 aa11.48□□□□□ -0.57
LDLR-214ENST00000560628 PSMC5P62195 406 aa11.48□□□□□ -0.57
LDLR-214ENST00000560628 NR5A1Q13285 461 aa11.48□□□□□ -0.57
LDLR-214ENST00000560628 CTC1Q2NKJ3 1217 aa11.48□□□□□ -0.57
LDLR-214ENST00000560628 PUS10Q3MIT2 529 aaKnown RBP11.48□□□□□ -0.57
LDLR-214ENST00000560628 ERICH6BQ5W0A0 696 aa11.48□□□□□ -0.57
LDLR-214ENST00000560628 PPP4R3AQ6IN85 833 aa11.48□□□□□ -0.57
LDLR-214ENST00000560628 FAM43BQ6ZT52 329 aaPredicted RBP11.48□□□□□ -0.57
LDLR-214ENST00000560628 ANO5Q75V66 913 aa11.48□□□□□ -0.57
LDLR-214ENST00000560628 ECHDC2Q86YB7 292 aa11.48□□□□□ -0.57
LDLR-214ENST00000560628 KSR1Q8IVT5 923 aa11.48□□□□□ -0.57
LDLR-214ENST00000560628 THNSL1Q8IYQ7 743 aa11.48□□□□□ -0.57
LDLR-214ENST00000560628 ZNF579Q8NAF0 562 aaKnown RBP11.48□□□□□ -0.57
LDLR-214ENST00000560628 COLGALT1Q8NBJ5 622 aa11.48□□□□□ -0.57
LDLR-214ENST00000560628 WASF1Q92558 559 aa11.48□□□□□ -0.57
LDLR-214ENST00000560628 HAS1Q92839 578 aa11.48□□□□□ -0.57
LDLR-214ENST00000560628 FAM20AQ96MK3 541 aa11.48□□□□□ -0.57
LDLR-214ENST00000560628 CASD1Q96PB1 797 aa11.48□□□□□ -0.57
LDLR-214ENST00000560628 FDXACB1Q9BRP7 624 aaPredicted RBP11.48□□□□□ -0.57
LDLR-214ENST00000560628 GCOM2Q9BZD3 368 aaPredicted RBP11.48□□□□□ -0.57
LDLR-214ENST00000560628 CWH43Q9H720 699 aa11.48□□□□□ -0.57
LDLR-214ENST00000560628 ELAC1Q9H777 363 aaKnown RBP11.48□□□□□ -0.57
LDLR-214ENST00000560628 KCNMB3Q9NPA1 279 aa11.48□□□□□ -0.57
LDLR-214ENST00000560628 AAASQ9NRG9 546 aa11.48□□□□□ -0.57
LDLR-214ENST00000560628 RNF19AQ9NV58 838 aa11.48□□□□□ -0.57
LDLR-214ENST00000560628 SUCLA2Q9P2R7 463 aaPredicted RBP11.48□□□□□ -0.57
LDLR-214ENST00000560628 VAV3Q9UKW4 847 aa11.48□□□□□ -0.57
LDLR-214ENST00000560628 NLRC5Q86WI3 1866 aa11.48□□□□□ -0.57
LDLR-214ENST00000560628 IGKV6-21A0A0C4DH24 114 aa11.47□□□□□ -0.57
LDLR-214ENST00000560628 PER2O15055 1255 aa11.47□□□□□ -0.57
LDLR-214ENST00000560628 FGF18O76093 207 aa11.47□□□□□ -0.57
LDLR-214ENST00000560628 GCFC2P16383 781 aaKnown RBP11.47□□□□□ -0.57
LDLR-214ENST00000560628 KRT2P35908 639 aa11.47□□□□□ -0.57
LDLR-214ENST00000560628 QARSP47897 775 aaKnown RBP11.47□□□□□ -0.57
LDLR-214ENST00000560628 NRIP1P48552 1158 aa11.47□□□□□ -0.57
LDLR-214ENST00000560628 PPP2R5CQ13362 524 aa11.47□□□□□ -0.57
LDLR-214ENST00000560628 ADAM15Q13444 863 aa11.47□□□□□ -0.57
LDLR-214ENST00000560628 NCAPH2Q6IBW4 605 aa11.47□□□□□ -0.57
LDLR-214ENST00000560628 LRRC55Q6ZSA7 311 aa11.47□□□□□ -0.57
LDLR-214ENST00000560628 POTEDQ86YR6 584 aa11.47□□□□□ -0.57
LDLR-214ENST00000560628 RHPN2Q8IUC4 686 aa11.47□□□□□ -0.57
LDLR-214ENST00000560628 ABI1Q8IZP0 508 aa11.47□□□□□ -0.57
LDLR-214ENST00000560628 ZNF710Q8N1W2 664 aa11.47□□□□□ -0.57
LDLR-214ENST00000560628 C1QTNF1Q9BXJ1 281 aa11.47□□□□□ -0.57
LDLR-214ENST00000560628 TMEM117Q9H0C3 514 aa11.47□□□□□ -0.57
LDLR-214ENST00000560628 TLE6Q9H808 572 aa11.47□□□□□ -0.57
LDLR-214ENST00000560628 RGL1Q9NZL6 768 aa11.47□□□□□ -0.57
LDLR-214ENST00000560628 WRAP73Q9P2S5 460 aaPredicted RBP11.47□□□□□ -0.57
LDLR-214ENST00000560628 RALGAPA2Q2PPJ7 1873 aa11.46□□□□□ -0.57
LDLR-214ENST00000560628 FAM86C2PA6NEL3 165 aa11.46□□□□□ -0.57
LDLR-214ENST00000560628 ZBTB39O15060 712 aa11.46□□□□□ -0.57
LDLR-214ENST00000560628 JAK2O60674 1132 aa11.46□□□□□ -0.57
LDLR-214ENST00000560628 TBX10O75333 385 aa11.46□□□□□ -0.57
LDLR-214ENST00000560628 MAFO75444 373 aaPredicted RBP11.46□□□□□ -0.57
LDLR-214ENST00000560628 P4HBP07237 508 aaKnown RBP11.46□□□□□ -0.57
LDLR-214ENST00000560628 PBX3P40426 434 aa11.46□□□□□ -0.57
LDLR-214ENST00000560628 NDUFV1P49821 464 aa11.46□□□□□ -0.57
LDLR-214ENST00000560628 ERVFC1P60507 584 aa11.46□□□□□ -0.57
LDLR-214ENST00000560628 CTTNQ14247 550 aaKnown RBP11.46□□□□□ -0.57
LDLR-214ENST00000560628 EPHA7Q15375 998 aa11.46□□□□□ -0.57
LDLR-214ENST00000560628 LONRF3Q496Y0 759 aa11.46□□□□□ -0.57
LDLR-214ENST00000560628 CLLU1OSQ5K130 101 aa11.46□□□□□ -0.57
LDLR-214ENST00000560628 NSUN7Q8NE18 718 aaKnown RBP11.46□□□□□ -0.57
LDLR-214ENST00000560628 GTF3C6Q969F1 213 aa11.46□□□□□ -0.57
LDLR-214ENST00000560628 PPP2R3CQ969Q6 453 aa11.46□□□□□ -0.57
LDLR-214ENST00000560628 DYDC2Q96IM9 177 aa11.46□□□□□ -0.57
LDLR-214ENST00000560628 CEP170P1Q96L14 293 aa11.46□□□□□ -0.57
LDLR-214ENST00000560628 NLRP4Q96MN2 994 aa11.46□□□□□ -0.57
LDLR-214ENST00000560628 CYP26B1Q9NR63 512 aa11.46□□□□□ -0.57
LDLR-214ENST00000560628 BMP2KQ9NSY1 1161 aaPredicted RBP11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms