RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 C1orf112Q9NSG2 853 aa15.77■□□□□ 0.12
LDLR-213ENST00000560502 CFAP45Q9UL16 551 aa15.77■□□□□ 0.12
LDLR-213ENST00000560502 LRFN2Q9ULH4 789 aa15.77■□□□□ 0.12
LDLR-213ENST00000560502 PCDHGC5Q9Y5F6 944 aa15.77■□□□□ 0.12
LDLR-213ENST00000560502 ZDBF2Q9HCK1 2354 aa15.77■□□□□ 0.11
LDLR-213ENST00000560502 DDX39AO00148 427 aaKnown RBP15.76■□□□□ 0.11
LDLR-213ENST00000560502 RPS6KA5O75582 802 aa15.76■□□□□ 0.11
LDLR-213ENST00000560502 C22orf31O95567 290 aa15.76■□□□□ 0.11
LDLR-213ENST00000560502 CYP3A4P08684 503 aa15.76■□□□□ 0.11
LDLR-213ENST00000560502 NCLP19338 710 aaKnown RBP15.76■□□□□ 0.11
LDLR-213ENST00000560502 NRIP1P48552 1158 aa15.76■□□□□ 0.11
LDLR-213ENST00000560502 NHLH1Q02575 133 aa15.76■□□□□ 0.11
LDLR-213ENST00000560502 UBE3AQ05086 875 aa15.76■□□□□ 0.11
LDLR-213ENST00000560502 NFX1Q12986 1120 aaKnown RBP15.76■□□□□ 0.11
LDLR-213ENST00000560502 SAFBQ15424 915 aaKnown RBP eCLIP15.76■□□□□ 0.11
LDLR-213ENST00000560502 KLHL40Q2TBA0 621 aa15.76■□□□□ 0.11
LDLR-213ENST00000560502 ZNF484Q5JVG2 852 aa15.76■□□□□ 0.11
LDLR-213ENST00000560502 ALYREFQ86V81 257 aaKnown RBP15.76■□□□□ 0.11
LDLR-213ENST00000560502 PLA2G4DQ86XP0 818 aa15.76■□□□□ 0.11
LDLR-213ENST00000560502 FBXL18Q96ME1 805 aa15.76■□□□□ 0.11
LDLR-213ENST00000560502 ZNF396Q96N95 335 aaPredicted RBP15.76■□□□□ 0.11
LDLR-213ENST00000560502 ZNF302Q9NR11 478 aa15.76■□□□□ 0.11
LDLR-213ENST00000560502 LMBRD1Q9NUN5 540 aa15.76■□□□□ 0.11
LDLR-213ENST00000560502 KMT2EQ8IZD2 1858 aa15.76■□□□□ 0.11
LDLR-213ENST00000560502 ESYT2A0FGR8 921 aa15.75■□□□□ 0.11
LDLR-213ENST00000560502 LOC730098B7Z3J9 87 aa15.75■□□□□ 0.11
LDLR-213ENST00000560502 BACH1O14867 736 aa15.75■□□□□ 0.11
LDLR-213ENST00000560502 TRAK2O60296 914 aa15.75■□□□□ 0.11
LDLR-213ENST00000560502 CBX2Q14781 532 aaPredicted RBP15.75■□□□□ 0.11
LDLR-213ENST00000560502 PFKFB3Q16875 520 aaPredicted RBP15.75■□□□□ 0.11
LDLR-213ENST00000560502 PDXDC2PQ6P474 469 aa15.75■□□□□ 0.11
LDLR-213ENST00000560502 SLC24A5Q71RS6 500 aa15.75■□□□□ 0.11
LDLR-213ENST00000560502 FAM228AQ86W67 206 aa15.75■□□□□ 0.11
LDLR-213ENST00000560502 EDAQ92838 391 aa15.75■□□□□ 0.11
LDLR-213ENST00000560502 ADAM2Q99965 735 aa15.75■□□□□ 0.11
LDLR-213ENST00000560502 SH3GLB2Q9NR46 395 aa15.75■□□□□ 0.11
LDLR-213ENST00000560502 HCSTQ9UBK5 93 aa15.75■□□□□ 0.11
LDLR-213ENST00000560502 BARX2Q9UMQ3 279 aaPredicted RBP15.75■□□□□ 0.11
LDLR-213ENST00000560502 ST3GAL5Q9UNP4 418 aa15.75■□□□□ 0.11
LDLR-213ENST00000560502 GINS2Q9Y248 185 aa15.75■□□□□ 0.11
LDLR-213ENST00000560502 PCDHB7Q9Y5E2 793 aa15.75■□□□□ 0.11
LDLR-213ENST00000560502 MAFBQ9Y5Q3 323 aaPredicted RBP15.75■□□□□ 0.11
LDLR-213ENST00000560502 IPO5O00410 1097 aaKnown RBP15.74■□□□□ 0.11
LDLR-213ENST00000560502 FSCN2O14926 492 aa15.74■□□□□ 0.11
LDLR-213ENST00000560502 ADAMTS3O15072 1205 aa15.74■□□□□ 0.11
LDLR-213ENST00000560502 GPR32O75388 356 aa15.74■□□□□ 0.11
LDLR-213ENST00000560502 ZNF76P36508 570 aa15.74■□□□□ 0.11
LDLR-213ENST00000560502 CRYBB1P53674 252 aaPredicted RBP15.74■□□□□ 0.11
LDLR-213ENST00000560502 FAM189BP81408 668 aa15.74■□□□□ 0.11
LDLR-213ENST00000560502 DSC3Q14574 896 aa15.74■□□□□ 0.11
LDLR-213ENST00000560502 ODR4Q5SWX8 454 aa15.74■□□□□ 0.11
LDLR-213ENST00000560502 FAM102BQ5T8I3 360 aa15.74■□□□□ 0.11
LDLR-213ENST00000560502 JAKMIP3Q5VZ66 844 aa15.74■□□□□ 0.11
LDLR-213ENST00000560502 SWSAP1Q6NVH7 229 aa15.74■□□□□ 0.11
LDLR-213ENST00000560502 MIS18BP1Q6P0N0 1132 aa15.74■□□□□ 0.11
LDLR-213ENST00000560502 RBM23Q86U06 439 aaKnown RBP15.74■□□□□ 0.11
LDLR-213ENST00000560502 COLGALT1Q8NBJ5 622 aa15.74■□□□□ 0.11
LDLR-213ENST00000560502 VN1R2Q8NFZ6 395 aa15.74■□□□□ 0.11
LDLR-213ENST00000560502 BBXQ8WY36 941 aaPredicted RBP15.74■□□□□ 0.11
LDLR-213ENST00000560502 TLR9Q9NR96 1032 aa15.74■□□□□ 0.11
LDLR-213ENST00000560502 RNF216Q9NWF9 866 aaPredicted RBP15.74■□□□□ 0.11
LDLR-213ENST00000560502 TMEM161AQ9NX61 479 aa15.74■□□□□ 0.11
LDLR-213ENST00000560502 USP15Q9Y4E8 981 aaPredicted RBP15.74■□□□□ 0.11
LDLR-213ENST00000560502 PCDHB12Q9Y5F1 795 aa15.74■□□□□ 0.11
LDLR-213ENST00000560502 DENND3A2RUS2 1198 aa15.73■□□□□ 0.11
LDLR-213ENST00000560502 TBKBP1A7MCY6 615 aa15.73■□□□□ 0.11
LDLR-213ENST00000560502 GPR182O15218 404 aa15.73■□□□□ 0.11
LDLR-213ENST00000560502 FGF18O76093 207 aa15.73■□□□□ 0.11
LDLR-213ENST00000560502 U2AF2P26368 475 aaKnown RBP eCLIP15.73■□□□□ 0.11
LDLR-213ENST00000560502 DNM1Q05193 864 aaKnown RBP15.73■□□□□ 0.11
LDLR-213ENST00000560502 DUSP6Q16828 381 aa15.73■□□□□ 0.11
LDLR-213ENST00000560502 KIZQ2M2Z5 673 aa15.73■□□□□ 0.11
LDLR-213ENST00000560502 ZNF746Q6NUN9 644 aaPredicted RBP15.73■□□□□ 0.11
LDLR-213ENST00000560502 BMP8AQ7Z5Y6 402 aa15.73■□□□□ 0.11
LDLR-213ENST00000560502 FERMT3Q86UX7 667 aa15.73■□□□□ 0.11
LDLR-213ENST00000560502 LINC01465Q8N7H1 131 aa15.73■□□□□ 0.11
LDLR-213ENST00000560502 SUSD6Q92537 303 aa15.73■□□□□ 0.11
LDLR-213ENST00000560502 MFSD14AQ96MC6 490 aa15.73■□□□□ 0.11
LDLR-213ENST00000560502 OSMRQ99650 979 aa15.73■□□□□ 0.11
LDLR-213ENST00000560502 ZMYND12Q9H0C1 365 aa15.73■□□□□ 0.11
LDLR-213ENST00000560502 FOXP1Q9H334 677 aaPredicted RBP15.73■□□□□ 0.11
LDLR-213ENST00000560502 CWH43Q9H720 699 aa15.73■□□□□ 0.11
LDLR-213ENST00000560502 ELAC1Q9H777 363 aaKnown RBP15.73■□□□□ 0.11
LDLR-213ENST00000560502 TLE6Q9H808 572 aa15.73■□□□□ 0.11
LDLR-213ENST00000560502 BRMS1Q9HCU9 246 aa15.73■□□□□ 0.11
LDLR-213ENST00000560502 AAASQ9NRG9 546 aa15.73■□□□□ 0.11
LDLR-213ENST00000560502 TBC1D22BQ9NU19 505 aa15.73■□□□□ 0.11
LDLR-213ENST00000560502 FSD2A1L4K1 749 aa15.72■□□□□ 0.11
LDLR-213ENST00000560502 PPFIA3O75145 1194 aa15.72■□□□□ 0.11
LDLR-213ENST00000560502 PRPF40AO75400 957 aaKnown RBP15.72■□□□□ 0.11
LDLR-213ENST00000560502 FGFR1P11362 822 aa15.72■□□□□ 0.11
LDLR-213ENST00000560502 IBSPP21815 317 aaPredicted RBP15.72■□□□□ 0.11
LDLR-213ENST00000560502 MRE11P49959 708 aa15.72■□□□□ 0.11
LDLR-213ENST00000560502 ERVFC1P60507 584 aa15.72■□□□□ 0.11
LDLR-213ENST00000560502 UBE2HP62256 183 aa15.72■□□□□ 0.11
LDLR-213ENST00000560502 RBM10P98175 930 aaKnown RBP15.72■□□□□ 0.11
LDLR-213ENST00000560502 SETQ01105 290 aaPredicted RBP15.72■□□□□ 0.11
LDLR-213ENST00000560502 KCNC3Q14003 757 aa15.72■□□□□ 0.11
LDLR-213ENST00000560502 GALNT17Q6IS24 598 aa15.72■□□□□ 0.11
LDLR-213ENST00000560502 SMAP1Q8IYB5 467 aaPredicted RBP15.72■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms