RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 B4GALT4O60513 344 aa10.23□□□□□ -0.77
LDLR-210ENST00000559340 TBCAO75347 108 aaKnown RBP10.23□□□□□ -0.77
LDLR-210ENST00000559340 FAM13AO94988 1023 aa10.23□□□□□ -0.77
LDLR-210ENST00000559340 SMC2O95347 1197 aa10.23□□□□□ -0.77
LDLR-210ENST00000559340 CLTBP09497 229 aa10.23□□□□□ -0.77
LDLR-210ENST00000559340 GAP43P17677 238 aa10.23□□□□□ -0.77
LDLR-210ENST00000559340 SMTNP53814 917 aa10.23□□□□□ -0.77
LDLR-210ENST00000559340 LRRC26Q2I0M4 334 aa10.23□□□□□ -0.77
LDLR-210ENST00000559340 SKOR2Q2VWA4 1001 aaPredicted RBP10.23□□□□□ -0.77
LDLR-210ENST00000559340 LONRF3Q496Y0 759 aa10.23□□□□□ -0.77
LDLR-210ENST00000559340 NAALADL2Q58DX5 795 aa10.23□□□□□ -0.77
LDLR-210ENST00000559340 MARCH8Q5T0T0 291 aa10.23□□□□□ -0.77
LDLR-210ENST00000559340 FMR1NBQ8N0W7 255 aaPredicted RBP10.23□□□□□ -0.77
LDLR-210ENST00000559340 ENGASEQ8NFI3 743 aa10.23□□□□□ -0.77
LDLR-210ENST00000559340 SYAP1Q96A49 352 aaPredicted RBP10.23□□□□□ -0.77
LDLR-210ENST00000559340 CEP89Q96ST8 783 aa10.23□□□□□ -0.77
LDLR-210ENST00000559340 C7orf25Q9BPX7 421 aa10.23□□□□□ -0.77
LDLR-210ENST00000559340 GTPBP4Q9BZE4 634 aaKnown RBP10.23□□□□□ -0.77
LDLR-210ENST00000559340 TRPV6Q9H1D0 765 aa10.23□□□□□ -0.77
LDLR-210ENST00000559340 TRMT13Q9NUP7 481 aaKnown RBP10.23□□□□□ -0.77
LDLR-210ENST00000559340 LARSQ9P2J5 1176 aaKnown RBP10.23□□□□□ -0.77
LDLR-210ENST00000559340 COL4A3BPQ9Y5P4 624 aa10.23□□□□□ -0.77
LDLR-210ENST00000559340 NR2E3Q9Y5X4 410 aa10.23□□□□□ -0.77
LDLR-210ENST00000559340 PVALEFA0A1B0GWK0 134 aa10.22□□□□□ -0.77
LDLR-210ENST00000559340 PITPNM1O00562 1244 aa10.22□□□□□ -0.77
LDLR-210ENST00000559340 ACTN4O43707 911 aaKnown RBP10.22□□□□□ -0.77
LDLR-210ENST00000559340 EVI5O60447 810 aa10.22□□□□□ -0.77
LDLR-210ENST00000559340 ARL2P36404 184 aa10.22□□□□□ -0.77
LDLR-210ENST00000559340 THPOP40225 353 aa10.22□□□□□ -0.77
LDLR-210ENST00000559340 AFMP43652 599 aa10.22□□□□□ -0.77
LDLR-210ENST00000559340 MRPS6P82932 125 aaKnown RBP10.22□□□□□ -0.77
LDLR-210ENST00000559340 ZNF200P98182 395 aaPredicted RBP10.22□□□□□ -0.77
LDLR-210ENST00000559340 POU5F1BQ06416 359 aa10.22□□□□□ -0.77
LDLR-210ENST00000559340 DMP1Q13316 513 aaPredicted RBP10.22□□□□□ -0.77
LDLR-210ENST00000559340 SNW1Q13573 536 aaKnown RBP10.22□□□□□ -0.77
LDLR-210ENST00000559340 CNNM4Q6P4Q7 775 aa10.22□□□□□ -0.77
LDLR-210ENST00000559340 CHRDL2Q6WN34 429 aa10.22□□□□□ -0.77
LDLR-210ENST00000559340 MAEAQ7L5Y9 396 aa10.22□□□□□ -0.77
LDLR-210ENST00000559340 ZNF410Q86VK4 478 aa10.22□□□□□ -0.77
LDLR-210ENST00000559340 KIAA0319LQ8IZA0 1049 aa10.22□□□□□ -0.77
LDLR-210ENST00000559340 LRRC71Q8N4P6 559 aa10.22□□□□□ -0.77
LDLR-210ENST00000559340 DNAJB3Q8WWF6 145 aa10.22□□□□□ -0.77
LDLR-210ENST00000559340 DDX12PQ92771 950 aa10.22□□□□□ -0.77
LDLR-210ENST00000559340 PAGE5Q96GU1 130 aa10.22□□□□□ -0.77
LDLR-210ENST00000559340 SCLT1Q96NL6 688 aa10.22□□□□□ -0.77
LDLR-210ENST00000559340 SH2D3AQ9BRG2 576 aa10.22□□□□□ -0.77
LDLR-210ENST00000559340 RUSC1Q9BVN2 902 aa10.22□□□□□ -0.77
LDLR-210ENST00000559340 GCOM2Q9BZD3 368 aaPredicted RBP10.22□□□□□ -0.77
LDLR-210ENST00000559340 FAM49AQ9H0Q0 323 aaPredicted RBP10.22□□□□□ -0.77
LDLR-210ENST00000559340 POLR3FQ9H1D9 316 aaPredicted RBP10.22□□□□□ -0.77
LDLR-210ENST00000559340 C2orf40Q9H1Z8 148 aa10.22□□□□□ -0.77
LDLR-210ENST00000559340 GOLPH3LQ9H4A5 285 aa10.22□□□□□ -0.77
LDLR-210ENST00000559340 PARVGQ9HBI0 331 aa10.22□□□□□ -0.77
LDLR-210ENST00000559340 SEL1LQ9UBV2 794 aa10.22□□□□□ -0.77
LDLR-210ENST00000559340 TRPV2Q9Y5S1 764 aa10.22□□□□□ -0.77
LDLR-210ENST00000559340 SQORQ9Y6N5 450 aa10.22□□□□□ -0.77
LDLR-210ENST00000559340 MYMKA6NI61 221 aa10.21□□□□□ -0.77
LDLR-210ENST00000559340 RSPH10B2B2RC85 870 aa10.21□□□□□ -0.77
LDLR-210ENST00000559340 KIAA0355O15063 1070 aa10.21□□□□□ -0.77
LDLR-210ENST00000559340 HIP1RO75146 1068 aa10.21□□□□□ -0.77
LDLR-210ENST00000559340 NR1I2O75469 434 aa10.21□□□□□ -0.77
LDLR-210ENST00000559340 RSPH10BP0C881 870 aa10.21□□□□□ -0.77
LDLR-210ENST00000559340 IDEP14735 1019 aa10.21□□□□□ -0.77
LDLR-210ENST00000559340 RAG1P15918 1043 aa10.21□□□□□ -0.77
LDLR-210ENST00000559340 SELPP16109 830 aa10.21□□□□□ -0.77
LDLR-210ENST00000559340 LIG1P18858 919 aa10.21□□□□□ -0.77
LDLR-210ENST00000559340 RFC2P35250 354 aa10.21□□□□□ -0.77
LDLR-210ENST00000559340 NAMPTP43490 491 aa10.21□□□□□ -0.77
LDLR-210ENST00000559340 PHKA2P46019 1235 aa10.21□□□□□ -0.77
LDLR-210ENST00000559340 CLCN3P51790 818 aa10.21□□□□□ -0.77
LDLR-210ENST00000559340 CRYBB1P53674 252 aaPredicted RBP10.21□□□□□ -0.77
LDLR-210ENST00000559340 ASIC1P78348 528 aa10.21□□□□□ -0.77
LDLR-210ENST00000559340 RBL2Q08999 1139 aa10.21□□□□□ -0.77
LDLR-210ENST00000559340 NCBP1Q09161 790 aaKnown RBP10.21□□□□□ -0.77
LDLR-210ENST00000559340 FAAP100Q0VG06 881 aa10.21□□□□□ -0.77
LDLR-210ENST00000559340 LAMTOR4Q0VGL1 99 aa10.21□□□□□ -0.77
LDLR-210ENST00000559340 PSMD2Q13200 908 aa10.21□□□□□ -0.77
LDLR-210ENST00000559340 GIT2Q14161 759 aa10.21□□□□□ -0.77
LDLR-210ENST00000559340 PCBP1Q15365 356 aaKnown RBP eCLIP10.21□□□□□ -0.77
LDLR-210ENST00000559340 FAM26DQ5JW98 314 aa10.21□□□□□ -0.77
LDLR-210ENST00000559340 STXBP4Q6ZWJ1 553 aa10.21□□□□□ -0.77
LDLR-210ENST00000559340 DYMQ7RTS9 669 aa10.21□□□□□ -0.77
LDLR-210ENST00000559340 SRGAP1Q7Z6B7 1085 aa10.21□□□□□ -0.77
LDLR-210ENST00000559340 SH3RF1Q7Z6J0 888 aa10.21□□□□□ -0.77
LDLR-210ENST00000559340 RHPN2Q8IUC4 686 aa10.21□□□□□ -0.77
LDLR-210ENST00000559340 ZBTB8OSQ8IWT0 167 aa10.21□□□□□ -0.77
LDLR-210ENST00000559340 RPUSD2Q8IZ73 545 aaKnown RBP10.21□□□□□ -0.77
LDLR-210ENST00000559340 MYCT1Q8N699 235 aa10.21□□□□□ -0.77
LDLR-210ENST00000559340 LINC01465Q8N7H1 131 aa10.21□□□□□ -0.77
LDLR-210ENST00000559340 USP38Q8NB14 1042 aa10.21□□□□□ -0.77
LDLR-210ENST00000559340 DEPTORQ8TB45 409 aa10.21□□□□□ -0.77
LDLR-210ENST00000559340 PPP1R13LQ8WUF5 828 aa10.21□□□□□ -0.77
LDLR-210ENST00000559340 PRPF31Q8WWY3 499 aaKnown RBP10.21□□□□□ -0.77
LDLR-210ENST00000559340 TMEM143Q96AN5 459 aa10.21□□□□□ -0.77
LDLR-210ENST00000559340 CELF4Q9BZC1 486 aaKnown RBP10.21□□□□□ -0.77
LDLR-210ENST00000559340 TRIM9Q9C026 710 aa10.21□□□□□ -0.77
LDLR-210ENST00000559340 HIPK3Q9H422 1215 aa10.21□□□□□ -0.77
LDLR-210ENST00000559340 ZHX3Q9H4I2 956 aa10.21□□□□□ -0.77
LDLR-210ENST00000559340 XPNPEP1Q9NQW7 623 aa10.21□□□□□ -0.77
LDLR-210ENST00000559340 PANK4Q9NVE7 773 aa10.21□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms