RNA–Protein interactions for RNA: ENST00000558093.1

SPG11-206, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-206ENST00000558093 CHAC2Q8WUX2 184 aa4.79□□□□□ -1.64
SPG11-206ENST00000558093 GCDHQ92947 438 aaPredicted RBP4.79□□□□□ -1.64
SPG11-206ENST00000558093 DYDC2Q96IM9 177 aa4.79□□□□□ -1.64
SPG11-206ENST00000558093 DEF6Q9H4E7 631 aa4.79□□□□□ -1.64
SPG11-206ENST00000558093 MTG2Q9H4K7 406 aa4.79□□□□□ -1.64
SPG11-206ENST00000558093 ZMAT4Q9H898 229 aa4.79□□□□□ -1.64
SPG11-206ENST00000558093 SPTLC3Q9NUV7 552 aa4.79□□□□□ -1.64
SPG11-206ENST00000558093 USP36Q9P275 1121 aaKnown RBP4.79□□□□□ -1.64
SPG11-206ENST00000558093 ST6GALNAC2Q9UJ37 374 aa4.79□□□□□ -1.64
SPG11-206ENST00000558093 MSRAQ9UJ68 235 aa4.79□□□□□ -1.64
SPG11-206ENST00000558093 DENND2AQ9ULE3 1009 aa4.79□□□□□ -1.64
SPG11-206ENST00000558093 VWA7Q9Y334 891 aa4.79□□□□□ -1.64
SPG11-206ENST00000558093 TCAF1Q9Y4C2 921 aa4.79□□□□□ -1.64
SPG11-206ENST00000558093 IGSF3O75054 1194 aa4.78□□□□□ -1.64
SPG11-206ENST00000558093 ADRB1P08588 477 aa4.78□□□□□ -1.64
SPG11-206ENST00000558093 CNGA1P29973 690 aa4.78□□□□□ -1.64
SPG11-206ENST00000558093 STRN3Q13033 797 aa4.78□□□□□ -1.64
SPG11-206ENST00000558093 LRRC32Q14392 662 aa4.78□□□□□ -1.64
SPG11-206ENST00000558093 ICAM4Q14773 271 aa4.78□□□□□ -1.64
SPG11-206ENST00000558093 TBR1Q16650 682 aa4.78□□□□□ -1.64
SPG11-206ENST00000558093 ATP13A4Q4VNC1 1196 aa4.78□□□□□ -1.64
SPG11-206ENST00000558093 HS1BP3Q53T59 392 aa4.78□□□□□ -1.64
SPG11-206ENST00000558093 KIAA1841Q6NSI8 718 aa4.78□□□□□ -1.64
SPG11-206ENST00000558093 DDX46Q7L014 1031 aaKnown RBP4.78□□□□□ -1.64
SPG11-206ENST00000558093 THNSL2Q86YJ6 484 aa4.78□□□□□ -1.64
SPG11-206ENST00000558093 UBR7Q8N806 425 aa4.78□□□□□ -1.64
SPG11-206ENST00000558093 LPPQ93052 612 aa4.78□□□□□ -1.64
SPG11-206ENST00000558093 GFM2Q969S9 779 aaKnown RBP4.78□□□□□ -1.64
SPG11-206ENST00000558093 BORCS6Q96GS4 357 aa4.78□□□□□ -1.64
SPG11-206ENST00000558093 HIST1H2AHQ96KK5 128 aa4.78□□□□□ -1.64
SPG11-206ENST00000558093 OR14A2Q96R54 314 aa4.78□□□□□ -1.64
SPG11-206ENST00000558093 TTC1Q99614 292 aa4.78□□□□□ -1.64
SPG11-206ENST00000558093 GPR20Q99678 358 aa4.78□□□□□ -1.64
SPG11-206ENST00000558093 HIST1H2AJQ99878 128 aa4.78□□□□□ -1.64
SPG11-206ENST00000558093 SSBP3Q9BWW4 388 aaPredicted RBP4.78□□□□□ -1.64
SPG11-206ENST00000558093 CAAP1Q9H8G2 361 aa4.78□□□□□ -1.64
SPG11-206ENST00000558093 EMC7Q9NPA0 242 aa4.78□□□□□ -1.64
SPG11-206ENST00000558093 DNAI1Q9UI46 699 aa4.78□□□□□ -1.64
SPG11-206ENST00000558093 TGM5O43548 720 aa4.77□□□□□ -1.65
SPG11-206ENST00000558093 KDM1AO60341 852 aa4.77□□□□□ -1.65
SPG11-206ENST00000558093 PCDH8O95206 1070 aa4.77□□□□□ -1.65
SPG11-206ENST00000558093 STAT3P40763 770 aa4.77□□□□□ -1.65
SPG11-206ENST00000558093 ADAM17P78536 824 aa4.77□□□□□ -1.65
SPG11-206ENST00000558093 SMAD3P84022 425 aaKnown RBP4.77□□□□□ -1.65
SPG11-206ENST00000558093 NFYCQ13952 458 aa4.77□□□□□ -1.65
SPG11-206ENST00000558093 DHCR24Q15392 516 aa4.77□□□□□ -1.65
SPG11-206ENST00000558093 TCTN3Q6NUS6 607 aa4.77□□□□□ -1.65
SPG11-206ENST00000558093 ZNF585AQ6P3V2 769 aa4.77□□□□□ -1.65
SPG11-206ENST00000558093 HDGFL2Q7Z4V5 671 aaPredicted RBP4.77□□□□□ -1.65
SPG11-206ENST00000558093 BMP8AQ7Z5Y6 402 aa4.77□□□□□ -1.65
SPG11-206ENST00000558093 RNF180Q86T96 592 aa4.77□□□□□ -1.65
SPG11-206ENST00000558093 ZNF610Q8N9Z0 462 aa4.77□□□□□ -1.65
SPG11-206ENST00000558093 SLC5A5Q92911 643 aa4.77□□□□□ -1.65
SPG11-206ENST00000558093 WDR92Q96MX6 357 aa4.77□□□□□ -1.65
SPG11-206ENST00000558093 NOL10Q9BSC4 688 aaKnown RBP4.77□□□□□ -1.65
SPG11-206ENST00000558093 IFT22Q9H7X7 185 aa4.77□□□□□ -1.65
SPG11-206ENST00000558093 ZFR2Q9UPR6 939 aaKnown RBP4.77□□□□□ -1.65
SPG11-206ENST00000558093 APOBEC2Q9Y235 224 aaKnown RBP4.77□□□□□ -1.65
SPG11-206ENST00000558093 RBM8AQ9Y5S9 174 aaKnown RBP4.77□□□□□ -1.65
SPG11-206ENST00000558093 GOLGA8BA8MQT2 603 aa4.76□□□□□ -1.65
SPG11-206ENST00000558093 DAPK3O43293 454 aa4.76□□□□□ -1.65
SPG11-206ENST00000558093 RPS19P39019 145 aaKnown RBP4.76□□□□□ -1.65
SPG11-206ENST00000558093 SELENOPP49908 381 aa4.76□□□□□ -1.65
SPG11-206ENST00000558093 PHC1P78364 1004 aa4.76□□□□□ -1.65
SPG11-206ENST00000558093 GPR158Q5T848 1215 aa4.76□□□□□ -1.65
SPG11-206ENST00000558093 KRT40Q6A162 431 aa4.76□□□□□ -1.65
SPG11-206ENST00000558093 UNQ6494/PRO21346Q6UXR6 183 aa4.76□□□□□ -1.65
SPG11-206ENST00000558093 PALM2Q8IXS6 379 aa4.76□□□□□ -1.65
SPG11-206ENST00000558093 BCL6BQ8N143 479 aaPredicted RBP4.76□□□□□ -1.65
SPG11-206ENST00000558093 SHCBP1Q8NEM2 672 aa4.76□□□□□ -1.65
SPG11-206ENST00000558093 DVL3Q92997 716 aaPredicted RBP4.76□□□□□ -1.65
SPG11-206ENST00000558093 SLC7A6OSQ96CW6 309 aaPredicted RBP4.76□□□□□ -1.65
SPG11-206ENST00000558093 PLA2G12BQ9BX93 195 aa4.76□□□□□ -1.65
SPG11-206ENST00000558093 MS4A5Q9H3V2 200 aa4.76□□□□□ -1.65
SPG11-206ENST00000558093 KCNG1Q9UIX4 513 aa4.76□□□□□ -1.65
SPG11-206ENST00000558093 NOC2LQ9Y3T9 749 aaKnown RBP4.76□□□□□ -1.65
SPG11-206ENST00000558093 A0A1W2PRX2 142 aa4.75□□□□□ -1.65
SPG11-206ENST00000558093 PATE3B3GLJ2 98 aa4.75□□□□□ -1.65
SPG11-206ENST00000558093 MUSKO15146 869 aa4.75□□□□□ -1.65
SPG11-206ENST00000558093 SLC26A4O43511 780 aa4.75□□□□□ -1.65
SPG11-206ENST00000558093 FOXS1O43638 330 aa4.75□□□□□ -1.65
SPG11-206ENST00000558093 OPHN1O60890 802 aa4.75□□□□□ -1.65
SPG11-206ENST00000558093 ZNF623O75123 536 aa4.75□□□□□ -1.65
SPG11-206ENST00000558093 CPEP16870 476 aa4.75□□□□□ -1.65
SPG11-206ENST00000558093 ZNF20P17024 532 aa4.75□□□□□ -1.65
SPG11-206ENST00000558093 COMTP21964 271 aa4.75□□□□□ -1.65
SPG11-206ENST00000558093 XPAP23025 273 aaPredicted RBP4.75□□□□□ -1.65
SPG11-206ENST00000558093 MASP1P48740 699 aa4.75□□□□□ -1.65
SPG11-206ENST00000558093 ANTXR2P58335 489 aa4.75□□□□□ -1.65
SPG11-206ENST00000558093 BPIFB4P59827 614 aa4.75□□□□□ -1.65
SPG11-206ENST00000558093 TCIRG1Q13488 830 aa4.75□□□□□ -1.65
SPG11-206ENST00000558093 TERF2Q15554 542 aa4.75□□□□□ -1.65
SPG11-206ENST00000558093 BROXQ5VW32 411 aa4.75□□□□□ -1.65
SPG11-206ENST00000558093 FRMD7Q6ZUT3 714 aa4.75□□□□□ -1.65
SPG11-206ENST00000558093 KANSL1Q7Z3B3 1105 aa4.75□□□□□ -1.65
SPG11-206ENST00000558093 FUKQ8N0W3 1084 aa4.75□□□□□ -1.65
SPG11-206ENST00000558093 CDYL2Q8N8U2 506 aa4.75□□□□□ -1.65
SPG11-206ENST00000558093 UIMC1Q96RL1 719 aa4.75□□□□□ -1.65
SPG11-206ENST00000558093 CDK5RAP1Q96SZ6 601 aaKnown RBP4.75□□□□□ -1.65
SPG11-206ENST00000558093 PITHD1Q9GZP4 211 aaPredicted RBP4.75□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms