RNA–Protein interactions for RNA: ENST00000557466.1

VIPAS39-210, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-210ENST00000557466 KIZQ2M2Z5 673 aa16.52■□□□□ 0.24
VIPAS39-210ENST00000557466 TCTN1Q2MV58 587 aa16.52■□□□□ 0.24
VIPAS39-210ENST00000557466 FBXO47Q5MNV8 452 aa16.52■□□□□ 0.24
VIPAS39-210ENST00000557466 KCTD17Q8N5Z5 321 aa16.52■□□□□ 0.24
VIPAS39-210ENST00000557466 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.52■□□□□ 0.24
VIPAS39-210ENST00000557466 CDHR5Q9HBB8 845 aa16.52■□□□□ 0.24
VIPAS39-210ENST00000557466 BLOC1S4Q9NUP1 217 aa16.52■□□□□ 0.24
VIPAS39-210ENST00000557466 GINS2Q9Y248 185 aa16.52■□□□□ 0.24
VIPAS39-210ENST00000557466 A0A087X0B3 334 aa16.51■□□□□ 0.23
VIPAS39-210ENST00000557466 PFKMP08237 780 aa16.51■□□□□ 0.23
VIPAS39-210ENST00000557466 LPIN1Q14693 890 aa16.51■□□□□ 0.23
VIPAS39-210ENST00000557466 TMEM240Q5SV17 173 aa16.51■□□□□ 0.23
VIPAS39-210ENST00000557466 C9orf50Q5SZB4 431 aa16.51■□□□□ 0.23
VIPAS39-210ENST00000557466 PSRC1Q6PGN9 363 aaPredicted RBP16.51■□□□□ 0.23
VIPAS39-210ENST00000557466 ZNF365Q70YC5 407 aa16.51■□□□□ 0.23
VIPAS39-210ENST00000557466 MAEAQ7L5Y9 396 aa16.51■□□□□ 0.23
VIPAS39-210ENST00000557466 RHPN2Q8IUC4 686 aa16.51■□□□□ 0.23
VIPAS39-210ENST00000557466 KSR1Q8IVT5 923 aa16.51■□□□□ 0.23
VIPAS39-210ENST00000557466 RPUSD2Q8IZ73 545 aaKnown RBP16.51■□□□□ 0.23
VIPAS39-210ENST00000557466 TMEM40Q8WWA1 233 aa16.51■□□□□ 0.23
VIPAS39-210ENST00000557466 TCP11Q8WWU5 503 aa16.51■□□□□ 0.23
VIPAS39-210ENST00000557466 PSPC1Q8WXF1 523 aaKnown RBP16.51■□□□□ 0.23
VIPAS39-210ENST00000557466 OSMRQ99650 979 aa16.51■□□□□ 0.23
VIPAS39-210ENST00000557466 RUSC1Q9BVN2 902 aa16.51■□□□□ 0.23
VIPAS39-210ENST00000557466 SCAND2PQ9GZW5 306 aaPredicted RBP16.51■□□□□ 0.23
VIPAS39-210ENST00000557466 POLR3FQ9H1D9 316 aaPredicted RBP16.51■□□□□ 0.23
VIPAS39-210ENST00000557466 ADAMTS10Q9H324 1103 aa16.51■□□□□ 0.23
VIPAS39-210ENST00000557466 GPRC5CQ9NQ84 441 aa16.51■□□□□ 0.23
VIPAS39-210ENST00000557466 CCDC39Q9UFE4 941 aa16.51■□□□□ 0.23
VIPAS39-210ENST00000557466 COL4A3BPQ9Y5P4 624 aa16.51■□□□□ 0.23
VIPAS39-210ENST00000557466 SSBP05455 408 aaKnown RBP eCLIP16.5■□□□□ 0.23
VIPAS39-210ENST00000557466 PLA2G4BP0C869 781 aa16.5■□□□□ 0.23
VIPAS39-210ENST00000557466 CYP11B2P19099 503 aa16.5■□□□□ 0.23
VIPAS39-210ENST00000557466 SLC12A3P55017 1021 aa16.5■□□□□ 0.23
VIPAS39-210ENST00000557466 NAALADL2Q58DX5 795 aa16.5■□□□□ 0.23
VIPAS39-210ENST00000557466 PLEKHG4Q58EX7 1191 aa16.5■□□□□ 0.23
VIPAS39-210ENST00000557466 RESP18Q5W5W9 173 aa16.5■□□□□ 0.23
VIPAS39-210ENST00000557466 SYT2Q8N9I0 419 aaPredicted RBP16.5■□□□□ 0.23
VIPAS39-210ENST00000557466 MCPH1Q8NEM0 835 aa16.5■□□□□ 0.23
VIPAS39-210ENST00000557466 ASAP3Q8TDY4 903 aa16.5■□□□□ 0.23
VIPAS39-210ENST00000557466 PRPF31Q8WWY3 499 aaKnown RBP16.5■□□□□ 0.23
VIPAS39-210ENST00000557466 RAD54LQ92698 747 aa16.5■□□□□ 0.23
VIPAS39-210ENST00000557466 NLRP4Q96MN2 994 aa16.5■□□□□ 0.23
VIPAS39-210ENST00000557466 SCLT1Q96NL6 688 aa16.5■□□□□ 0.23
VIPAS39-210ENST00000557466 AGO3Q9H9G7 860 aaKnown RBP16.5■□□□□ 0.23
VIPAS39-210ENST00000557466 COLQQ9Y215 455 aaPredicted RBP16.5■□□□□ 0.23
VIPAS39-210ENST00000557466 A0A087WZ62 844 aa16.49■□□□□ 0.23
VIPAS39-210ENST00000557466 ARL2P36404 184 aa16.49■□□□□ 0.23
VIPAS39-210ENST00000557466 CRYBB1P53674 252 aaPredicted RBP16.49■□□□□ 0.23
VIPAS39-210ENST00000557466 LAMTOR4Q0VGL1 99 aa16.49■□□□□ 0.23
VIPAS39-210ENST00000557466 MCM6Q14566 821 aa16.49■□□□□ 0.23
VIPAS39-210ENST00000557466 SHHQ15465 462 aa16.49■□□□□ 0.23
VIPAS39-210ENST00000557466 RRAGBQ5VZM2 374 aa16.49■□□□□ 0.23
VIPAS39-210ENST00000557466 RINT1Q6NUQ1 792 aa16.49■□□□□ 0.23
VIPAS39-210ENST00000557466 CNKSR3Q6P9H4 555 aa16.49■□□□□ 0.23
VIPAS39-210ENST00000557466 TSHZ1Q6ZSZ6 1077 aa16.49■□□□□ 0.23
VIPAS39-210ENST00000557466 ZNF410Q86VK4 478 aa16.49■□□□□ 0.23
VIPAS39-210ENST00000557466 PDILTQ8N807 584 aa16.49■□□□□ 0.23
VIPAS39-210ENST00000557466 DBF4BQ8NFT6 615 aa16.49■□□□□ 0.23
VIPAS39-210ENST00000557466 NLRP7Q8WX94 980 aa16.49■□□□□ 0.23
VIPAS39-210ENST00000557466 GBF1Q92538 1859 aa16.49■□□□□ 0.23
VIPAS39-210ENST00000557466 LARP4BQ92615 738 aaKnown RBP16.49■□□□□ 0.23
VIPAS39-210ENST00000557466 FDXACB1Q9BRP7 624 aaPredicted RBP16.49■□□□□ 0.23
VIPAS39-210ENST00000557466 IFIH1Q9BYX4 1025 aaKnown RBP16.49■□□□□ 0.23
VIPAS39-210ENST00000557466 STK17AQ9UEE5 414 aa16.49■□□□□ 0.23
VIPAS39-210ENST00000557466 NOC2LQ9Y3T9 749 aaKnown RBP16.49■□□□□ 0.23
VIPAS39-210ENST00000557466 SQORQ9Y6N5 450 aa16.49■□□□□ 0.23
VIPAS39-210ENST00000557466 FGBP02675 491 aa16.48■□□□□ 0.23
VIPAS39-210ENST00000557466 GLRA2P23416 452 aa16.48■□□□□ 0.23
VIPAS39-210ENST00000557466 CD52P31358 61 aa16.48■□□□□ 0.23
VIPAS39-210ENST00000557466 STAT6P42226 847 aa16.48■□□□□ 0.23
VIPAS39-210ENST00000557466 CAPSQ13938 189 aa16.48■□□□□ 0.23
VIPAS39-210ENST00000557466 DHX8Q14562 1220 aaKnown RBP16.48■□□□□ 0.23
VIPAS39-210ENST00000557466 FAM102BQ5T8I3 360 aa16.48■□□□□ 0.23
VIPAS39-210ENST00000557466 CCDC73Q6ZRK6 1079 aa16.48■□□□□ 0.23
VIPAS39-210ENST00000557466 C1orf186Q6ZWK4 172 aa16.48■□□□□ 0.23
VIPAS39-210ENST00000557466 OTOP2Q7RTS6 562 aa16.48■□□□□ 0.23
VIPAS39-210ENST00000557466 FAM228AQ86W67 206 aa16.48■□□□□ 0.23
VIPAS39-210ENST00000557466 GPBP1Q86WP2 473 aa16.48■□□□□ 0.23
VIPAS39-210ENST00000557466 ZNF710Q8N1W2 664 aa16.48■□□□□ 0.23
VIPAS39-210ENST00000557466 BSNDQ8WZ55 320 aa16.48■□□□□ 0.23
VIPAS39-210ENST00000557466 PANK2Q9BZ23 570 aa16.48■□□□□ 0.23
VIPAS39-210ENST00000557466 POLD4Q9HCU8 107 aa16.48■□□□□ 0.23
VIPAS39-210ENST00000557466 DARSP14868 501 aaKnown RBP16.47■□□□□ 0.23
VIPAS39-210ENST00000557466 CDC42EP1Q00587 391 aa16.47■□□□□ 0.23
VIPAS39-210ENST00000557466 MAPK7Q13164 816 aa16.47■□□□□ 0.23
VIPAS39-210ENST00000557466 PAK2Q13177 524 aa16.47■□□□□ 0.23
VIPAS39-210ENST00000557466 MXD4Q14582 209 aaPredicted RBP16.47■□□□□ 0.23
VIPAS39-210ENST00000557466 E2F4Q16254 413 aa16.47■□□□□ 0.23
VIPAS39-210ENST00000557466 ADALQ6DHV7 355 aa16.47■□□□□ 0.23
VIPAS39-210ENST00000557466 TDHQ8IZJ6 230 aa16.47■□□□□ 0.23
VIPAS39-210ENST00000557466 DAW1Q8N136 415 aa16.47■□□□□ 0.23
VIPAS39-210ENST00000557466 USP38Q8NB14 1042 aa16.47■□□□□ 0.23
VIPAS39-210ENST00000557466 RNF149Q8NC42 400 aa16.47■□□□□ 0.23
VIPAS39-210ENST00000557466 HERVK_113Q902F9 699 aa16.47■□□□□ 0.23
VIPAS39-210ENST00000557466 SEPT8Q92599 483 aa16.47■□□□□ 0.23
VIPAS39-210ENST00000557466 RNPC3Q96LT9 517 aaKnown RBP16.47■□□□□ 0.23
VIPAS39-210ENST00000557466 IFT122Q9HBG6 1241 aa16.47■□□□□ 0.23
VIPAS39-210ENST00000557466 ERVK-5Q9HDB9 667 aa16.47■□□□□ 0.23
VIPAS39-210ENST00000557466 FAM13BQ9NYF5 915 aa16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms