RNA–Protein interactions for RNA: ENST00000556413.1

SCFD1-219, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 512 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-219ENST00000556413 ANKRD35Q8N283 1001 aa5.71□□□□□ -1.5
SCFD1-219ENST00000556413 GFM2Q969S9 779 aaKnown RBP5.71□□□□□ -1.5
SCFD1-219ENST00000556413 SLC7A6OSQ96CW6 309 aaPredicted RBP5.71□□□□□ -1.5
SCFD1-219ENST00000556413 RPL10LQ96L21 214 aaKnown RBP5.71□□□□□ -1.5
SCFD1-219ENST00000556413 GPHA2Q96T91 129 aa5.71□□□□□ -1.5
SCFD1-219ENST00000556413 BOCQ9BWV1 1114 aa5.71□□□□□ -1.5
SCFD1-219ENST00000556413 MRPL4Q9BYD3 311 aaKnown RBP5.71□□□□□ -1.5
SCFD1-219ENST00000556413 TRIM39Q9HCM9 518 aa5.71□□□□□ -1.5
SCFD1-219ENST00000556413 DENND2AQ9ULE3 1009 aa5.71□□□□□ -1.5
SCFD1-219ENST00000556413 REXO2Q9Y3B8 237 aaKnown RBP5.71□□□□□ -1.5
SCFD1-219ENST00000556413 RBM8AQ9Y5S9 174 aaKnown RBP5.71□□□□□ -1.5
SCFD1-219ENST00000556413 CCDC163A0A0D9SF12 145 aa5.7□□□□□ -1.5
SCFD1-219ENST00000556413 RGS3P49796 1198 aa5.7□□□□□ -1.5
SCFD1-219ENST00000556413 SLC25A3Q00325 362 aa5.7□□□□□ -1.5
SCFD1-219ENST00000556413 KRTAP15-1Q3LI76 137 aa5.7□□□□□ -1.5
SCFD1-219ENST00000556413 Q6ZRM9 215 aa5.7□□□□□ -1.5
SCFD1-219ENST00000556413 GAREM2Q75VX8 874 aa5.7□□□□□ -1.5
SCFD1-219ENST00000556413 ANKRD53Q8N9V6 530 aa5.7□□□□□ -1.5
SCFD1-219ENST00000556413 ZSWIM2Q8NEG5 633 aa5.7□□□□□ -1.5
SCFD1-219ENST00000556413 MIEF2Q96C03 454 aa5.7□□□□□ -1.5
SCFD1-219ENST00000556413 E9PSI1 815 aa5.69□□□□□ -1.5
SCFD1-219ENST00000556413 DVL2O14641 736 aa5.69□□□□□ -1.5
SCFD1-219ENST00000556413 KRT37O76014 449 aa5.69□□□□□ -1.5
SCFD1-219ENST00000556413 PEX11BO96011 259 aa5.69□□□□□ -1.5
SCFD1-219ENST00000556413 PRLP01236 227 aa5.69□□□□□ -1.5
SCFD1-219ENST00000556413 FNTBP49356 437 aa5.69□□□□□ -1.5
SCFD1-219ENST00000556413 MECP2P51608 486 aaKnown RBP5.69□□□□□ -1.5
SCFD1-219ENST00000556413 BPIFB4P59827 614 aa5.69□□□□□ -1.5
SCFD1-219ENST00000556413 SLC6A3Q01959 620 aa5.69□□□□□ -1.5
SCFD1-219ENST00000556413 PCSK4Q6UW60 755 aa5.69□□□□□ -1.5
SCFD1-219ENST00000556413 Q6ZPA2 131 aa5.69□□□□□ -1.5
SCFD1-219ENST00000556413 MRGPRGQ86SM5 289 aa5.69□□□□□ -1.5
SCFD1-219ENST00000556413 OR5AN1Q8NGI8 311 aa5.69□□□□□ -1.5
SCFD1-219ENST00000556413 GCDHQ92947 438 aaPredicted RBP5.69□□□□□ -1.5
SCFD1-219ENST00000556413 NKD2Q969F2 451 aaPredicted RBP5.69□□□□□ -1.5
SCFD1-219ENST00000556413 E2F7Q96AV8 911 aa5.69□□□□□ -1.5
SCFD1-219ENST00000556413 ARMC5Q96C12 935 aa5.69□□□□□ -1.5
SCFD1-219ENST00000556413 UBE2QL1A1L167 161 aa5.68□□□□□ -1.5
SCFD1-219ENST00000556413 M0R2C6 588 aa5.68□□□□□ -1.5
SCFD1-219ENST00000556413 KRT4P19013 534 aa5.68□□□□□ -1.5
SCFD1-219ENST00000556413 KIF11P52732 1056 aa5.68□□□□□ -1.5
SCFD1-219ENST00000556413 NANOS3P60323 173 aaKnown RBP5.68□□□□□ -1.5
SCFD1-219ENST00000556413 ROM1Q03395 351 aa5.68□□□□□ -1.5
SCFD1-219ENST00000556413 DGKDQ16760 1214 aa5.68□□□□□ -1.5
SCFD1-219ENST00000556413 ARHGAP44Q17R89 818 aa5.68□□□□□ -1.5
SCFD1-219ENST00000556413 FAM111BQ6SJ93 734 aa5.68□□□□□ -1.5
SCFD1-219ENST00000556413 ZNF575Q86XF7 245 aa5.68□□□□□ -1.5
SCFD1-219ENST00000556413 ULK2Q8IYT8 1036 aa5.68□□□□□ -1.5
SCFD1-219ENST00000556413 THAP3Q8WTV1 239 aaPredicted RBP5.68□□□□□ -1.5
SCFD1-219ENST00000556413 MAML3Q96JK9 1138 aa5.68□□□□□ -1.5
SCFD1-219ENST00000556413 SRPK1Q96SB4 655 aaKnown RBP5.68□□□□□ -1.5
SCFD1-219ENST00000556413 AGAP2Q99490 1192 aa5.68□□□□□ -1.5
SCFD1-219ENST00000556413 NCOA5Q9HCD5 579 aaKnown RBP5.68□□□□□ -1.5
SCFD1-219ENST00000556413 GPRC5BQ9NZH0 403 aa5.68□□□□□ -1.5
SCFD1-219ENST00000556413 DMRT1Q9Y5R6 373 aa5.68□□□□□ -1.5
SCFD1-219ENST00000556413 TGM1P22735 817 aa5.67□□□□□ -1.5
SCFD1-219ENST00000556413 MAN2A2P49641 1150 aa5.67□□□□□ -1.5
SCFD1-219ENST00000556413 KRTAP1-1Q07627 177 aa5.67□□□□□ -1.5
SCFD1-219ENST00000556413 TCIRG1Q13488 830 aa5.67□□□□□ -1.5
SCFD1-219ENST00000556413 CNGB1Q14028 1251 aaPredicted RBP5.67□□□□□ -1.5
SCFD1-219ENST00000556413 TOB2Q14106 344 aaPredicted RBP5.67□□□□□ -1.5
SCFD1-219ENST00000556413 GSPT2Q8IYD1 628 aaKnown RBP5.67□□□□□ -1.5
SCFD1-219ENST00000556413 PRRX2Q99811 253 aa5.67□□□□□ -1.5
SCFD1-219ENST00000556413 PTCH2Q9Y6C5 1203 aa5.67□□□□□ -1.5
SCFD1-219ENST00000556413 GOLGA8BA8MQT2 603 aa5.66□□□□□ -1.5
SCFD1-219ENST00000556413 GLRX3O76003 335 aaKnown RBP5.66□□□□□ -1.5
SCFD1-219ENST00000556413 ELAVL1Q15717 326 aaKnown RBP5.66□□□□□ -1.5
SCFD1-219ENST00000556413 GAGE13Q4V321 117 aa5.66□□□□□ -1.5
SCFD1-219ENST00000556413 SLFN12LQ6IEE8 588 aa5.66□□□□□ -1.5
SCFD1-219ENST00000556413 CLEC14AQ86T13 490 aa5.66□□□□□ -1.5
SCFD1-219ENST00000556413 DDX53Q86TM3 631 aaKnown RBP5.66□□□□□ -1.5
SCFD1-219ENST00000556413 MKL1Q969V6 931 aa5.66□□□□□ -1.5
SCFD1-219ENST00000556413 IL23AQ9NPF7 189 aa5.66□□□□□ -1.5
SCFD1-219ENST00000556413 KCMF1Q9P0J7 381 aa5.66□□□□□ -1.5
SCFD1-219ENST00000556413 UBA6A0AVT1 1052 aaPredicted RBP5.65□□□□□ -1.5
SCFD1-219ENST00000556413 RAMP2O60895 175 aa5.65□□□□□ -1.5
SCFD1-219ENST00000556413 RPS6KA4O75676 772 aa5.65□□□□□ -1.5
SCFD1-219ENST00000556413 RAPGEF3O95398 923 aa5.65□□□□□ -1.5
SCFD1-219ENST00000556413 C2orf27AQ580R0 203 aa5.65□□□□□ -1.5
SCFD1-219ENST00000556413 TTC38Q5R3I4 469 aa5.65□□□□□ -1.5
SCFD1-219ENST00000556413 ZCCHC8Q6NZY4 707 aaKnown RBP5.65□□□□□ -1.5
SCFD1-219ENST00000556413 ZNF662Q6ZS27 426 aa5.65□□□□□ -1.5
SCFD1-219ENST00000556413 PLA2G15Q8NCC3 412 aa5.65□□□□□ -1.5
SCFD1-219ENST00000556413 CHST14Q8NCH0 376 aa5.65□□□□□ -1.5
SCFD1-219ENST00000556413 ZG16BQ96DA0 208 aa5.65□□□□□ -1.5
SCFD1-219ENST00000556413 DYDC2Q96IM9 177 aa5.65□□□□□ -1.5
SCFD1-219ENST00000556413 C8orf37Q96NL8 207 aa5.65□□□□□ -1.5
SCFD1-219ENST00000556413 CLUHP3Q96NS8 147 aa5.65□□□□□ -1.5
SCFD1-219ENST00000556413 TCF25Q9BQ70 676 aa5.65□□□□□ -1.5
SCFD1-219ENST00000556413 GPR87Q9BY21 358 aa5.65□□□□□ -1.5
SCFD1-219ENST00000556413 ACSS2Q9NR19 701 aa5.65□□□□□ -1.5
SCFD1-219ENST00000556413 SAMD15Q9P1V8 674 aa5.65□□□□□ -1.5
SCFD1-219ENST00000556413 XDHP47989 1333 aa5.65□□□□□ -1.51
SCFD1-219ENST00000556413 TRAF5O00463 557 aa5.64□□□□□ -1.51
SCFD1-219ENST00000556413 PLD2O14939 933 aa5.64□□□□□ -1.51
SCFD1-219ENST00000556413 FOXN1O15353 648 aa5.64□□□□□ -1.51
SCFD1-219ENST00000556413 TOX4O94842 621 aa5.64□□□□□ -1.51
SCFD1-219ENST00000556413 VSIG10L2P0DP72 767 aa5.64□□□□□ -1.51
SCFD1-219ENST00000556413 RABGGTBP53611 331 aa5.64□□□□□ -1.51
SCFD1-219ENST00000556413 PRAMEF9Q5VWM5 478 aa5.64□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms