RNA–Protein interactions for RNA: ENST00000553544.1

SRP54-203, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 491 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-203ENST00000553544 ANO3Q9BYT9 981 aa13.4□□□□□ -0.26
SRP54-203ENST00000553544 ZMYND12Q9H0C1 365 aa13.4□□□□□ -0.26
SRP54-203ENST00000553544 MFSD1Q9H3U5 465 aa13.4□□□□□ -0.26
SRP54-203ENST00000553544 CYP46A1Q9Y6A2 500 aa13.4□□□□□ -0.26
SRP54-203ENST00000553544 MYO15AQ9UKN7 3530 aa13.4□□□□□ -0.26
SRP54-203ENST00000553544 NFASCO94856 1347 aa13.39□□□□□ -0.27
SRP54-203ENST00000553544 ESYT2A0FGR8 921 aa13.39□□□□□ -0.27
SRP54-203ENST00000553544 ATG7O95352 703 aa13.39□□□□□ -0.27
SRP54-203ENST00000553544 FGFR1P11362 822 aa13.39□□□□□ -0.27
SRP54-203ENST00000553544 PPM1AP35813 382 aa13.39□□□□□ -0.27
SRP54-203ENST00000553544 SREBF1P36956 1147 aa13.39□□□□□ -0.27
SRP54-203ENST00000553544 MTHFRP42898 656 aa13.39□□□□□ -0.27
SRP54-203ENST00000553544 CLCN5P51795 746 aa13.39□□□□□ -0.27
SRP54-203ENST00000553544 CRYBB1P53674 252 aaPredicted RBP13.39□□□□□ -0.27
SRP54-203ENST00000553544 BMS1Q14692 1282 aaKnown RBP13.39□□□□□ -0.27
SRP54-203ENST00000553544 ZNF484Q5JVG2 852 aa13.39□□□□□ -0.27
SRP54-203ENST00000553544 KCNT2Q6UVM3 1135 aa13.39□□□□□ -0.27
SRP54-203ENST00000553544 MRPL43Q8N983 215 aaKnown RBP13.39□□□□□ -0.27
SRP54-203ENST00000553544 CYP2W1Q8TAV3 490 aa13.39□□□□□ -0.27
SRP54-203ENST00000553544 CRYGNQ8WXF5 182 aa13.39□□□□□ -0.27
SRP54-203ENST00000553544 PHKBQ93100 1093 aa13.39□□□□□ -0.27
SRP54-203ENST00000553544 PGBD1Q96JS3 809 aa13.39□□□□□ -0.27
SRP54-203ENST00000553544 ZNF558Q96NG5 402 aa13.39□□□□□ -0.27
SRP54-203ENST00000553544 RNF26Q9BY78 433 aaPredicted RBP13.39□□□□□ -0.27
SRP54-203ENST00000553544 TMEM117Q9H0C3 514 aa13.39□□□□□ -0.27
SRP54-203ENST00000553544 SPG21Q9NZD8 308 aa13.39□□□□□ -0.27
SRP54-203ENST00000553544 LOXHD1Q8IVV2 1947 aa13.39□□□□□ -0.27
SRP54-203ENST00000553544 MYH9P35579 1960 aaKnown RBP13.38□□□□□ -0.27
SRP54-203ENST00000553544 VPS13AQ96RL7 3174 aa13.38□□□□□ -0.27
SRP54-203ENST00000553544 C2CD4DB7Z1M9 353 aa13.38□□□□□ -0.27
SRP54-203ENST00000553544 MEIS1O00470 390 aa13.38□□□□□ -0.27
SRP54-203ENST00000553544 BACH1O14867 736 aa13.38□□□□□ -0.27
SRP54-203ENST00000553544 ADAMTS3O15072 1205 aa13.38□□□□□ -0.27
SRP54-203ENST00000553544 ID4P47928 161 aa13.38□□□□□ -0.27
SRP54-203ENST00000553544 CCT2P78371 535 aaKnown RBP13.38□□□□□ -0.27
SRP54-203ENST00000553544 SMC1AQ14683 1233 aaKnown RBP13.38□□□□□ -0.27
SRP54-203ENST00000553544 CEP55Q53EZ4 464 aa13.38□□□□□ -0.27
SRP54-203ENST00000553544 ATAT1Q5SQI0 421 aa13.38□□□□□ -0.27
SRP54-203ENST00000553544 FAM160B1Q5W0V3 765 aa13.38□□□□□ -0.27
SRP54-203ENST00000553544 MCTP2Q6DN12 878 aa13.38□□□□□ -0.27
SRP54-203ENST00000553544 LRRC55Q6ZSA7 311 aa13.38□□□□□ -0.27
SRP54-203ENST00000553544 ABI1Q8IZP0 508 aa13.38□□□□□ -0.27
SRP54-203ENST00000553544 PLCD3Q8N3E9 789 aa13.38□□□□□ -0.27
SRP54-203ENST00000553544 TMEM87AQ8NBN3 555 aa13.38□□□□□ -0.27
SRP54-203ENST00000553544 TMEM40Q8WWA1 233 aa13.38□□□□□ -0.27
SRP54-203ENST00000553544 ZNF274Q96GC6 653 aaPredicted RBP13.38□□□□□ -0.27
SRP54-203ENST00000553544 CASD1Q96PB1 797 aa13.38□□□□□ -0.27
SRP54-203ENST00000553544 POMKQ9H5K3 350 aa13.38□□□□□ -0.27
SRP54-203ENST00000553544 NCOA5Q9HCD5 579 aaKnown RBP13.38□□□□□ -0.27
SRP54-203ENST00000553544 HCSTQ9UBK5 93 aa13.38□□□□□ -0.27
SRP54-203ENST00000553544 LIMD1Q9UGP4 676 aa13.38□□□□□ -0.27
SRP54-203ENST00000553544 KMT2EQ8IZD2 1858 aa13.38□□□□□ -0.27
SRP54-203ENST00000553544 IGKV6D-21A0A0A0MT36 114 aa13.37□□□□□ -0.27
SRP54-203ENST00000553544 C2orf71A6NGG8 1288 aa13.37□□□□□ -0.27
SRP54-203ENST00000553544 CXCL14O95715 111 aa13.37□□□□□ -0.27
SRP54-203ENST00000553544 CYP3A4P08684 503 aa13.37□□□□□ -0.27
SRP54-203ENST00000553544 ARP10275 920 aa13.37□□□□□ -0.27
SRP54-203ENST00000553544 ZSCAN20P17040 1043 aaPredicted RBP13.37□□□□□ -0.27
SRP54-203ENST00000553544 KIZQ2M2Z5 673 aa13.37□□□□□ -0.27
SRP54-203ENST00000553544 ABHD15Q6UXT9 468 aa13.37□□□□□ -0.27
SRP54-203ENST00000553544 FRMD5Q7Z6J6 570 aa13.37□□□□□ -0.27
SRP54-203ENST00000553544 ZDHHC14Q8IZN3 488 aa13.37□□□□□ -0.27
SRP54-203ENST00000553544 ADSSL1Q8N142 457 aa13.37□□□□□ -0.27
SRP54-203ENST00000553544 CCDC12Q8WUD4 166 aaPredicted RBP13.37□□□□□ -0.27
SRP54-203ENST00000553544 AGO4Q9HCK5 861 aaKnown RBP13.37□□□□□ -0.27
SRP54-203ENST00000553544 HCFC2Q9Y5Z7 792 aa13.37□□□□□ -0.27
SRP54-203ENST00000553544 MYO10Q9HD67 2058 aa13.36□□□□□ -0.27
SRP54-203ENST00000553544 COL1A2P08123 1366 aa13.36□□□□□ -0.27
SRP54-203ENST00000553544 CLASP2O75122 1294 aaKnown RBP13.36□□□□□ -0.27
SRP54-203ENST00000553544 ANAPC15P60006 121 aa13.36□□□□□ -0.27
SRP54-203ENST00000553544 AKAP17AQ02040 695 aaKnown RBP13.36□□□□□ -0.27
SRP54-203ENST00000553544 ITGB3BPQ13352 177 aaPredicted RBP13.36□□□□□ -0.27
SRP54-203ENST00000553544 DSC3Q14574 896 aa13.36□□□□□ -0.27
SRP54-203ENST00000553544 JAKMIP3Q5VZ66 844 aa13.36□□□□□ -0.27
SRP54-203ENST00000553544 SWSAP1Q6NVH7 229 aa13.36□□□□□ -0.27
SRP54-203ENST00000553544 PDXDC2PQ6P474 469 aa13.36□□□□□ -0.27
SRP54-203ENST00000553544 NIPA1Q7RTP0 329 aa13.36□□□□□ -0.27
SRP54-203ENST00000553544 FAM228AQ86W67 206 aa13.36□□□□□ -0.27
SRP54-203ENST00000553544 LRRC43Q8N309 656 aa13.36□□□□□ -0.27
SRP54-203ENST00000553544 METTL13Q8N6R0 699 aa13.36□□□□□ -0.27
SRP54-203ENST00000553544 OSMRQ99650 979 aa13.36□□□□□ -0.27
SRP54-203ENST00000553544 SLC26A6Q9BXS9 759 aa13.36□□□□□ -0.27
SRP54-203ENST00000553544 C6orf50Q9HD87 102 aa13.36□□□□□ -0.27
SRP54-203ENST00000553544 ZNF302Q9NR11 478 aa13.36□□□□□ -0.27
SRP54-203ENST00000553544 DBR1Q9UK59 544 aaKnown RBP13.36□□□□□ -0.27
SRP54-203ENST00000553544 USTQ9Y2C2 406 aa13.36□□□□□ -0.27
SRP54-203ENST00000553544 IGLV3-22A0A075B6J6 115 aa13.35□□□□□ -0.27
SRP54-203ENST00000553544 FAM86B1E9PN63 330 aa13.35□□□□□ -0.27
SRP54-203ENST00000553544 GPR32O75388 356 aa13.35□□□□□ -0.27
SRP54-203ENST00000553544 ASGR2P07307 311 aa13.35□□□□□ -0.27
SRP54-203ENST00000553544 FAM86B2P0C5J1 330 aa13.35□□□□□ -0.27
SRP54-203ENST00000553544 GNA11P29992 359 aa13.35□□□□□ -0.27
SRP54-203ENST00000553544 CA8P35219 290 aa13.35□□□□□ -0.27
SRP54-203ENST00000553544 ZNF76P36508 570 aa13.35□□□□□ -0.27
SRP54-203ENST00000553544 PBX3P40426 434 aa13.35□□□□□ -0.27
SRP54-203ENST00000553544 ALDH7A1P49419 539 aaKnown RBP13.35□□□□□ -0.27
SRP54-203ENST00000553544 CKAP2LQ8IYA6 745 aa13.35□□□□□ -0.27
SRP54-203ENST00000553544 ZNF710Q8N1W2 664 aa13.35□□□□□ -0.27
SRP54-203ENST00000553544 TDRD5Q8NAT2 981 aaKnown RBP13.35□□□□□ -0.27
SRP54-203ENST00000553544 PPP1R16BQ96T49 567 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms