RNA–Protein interactions for RNA: ENST00000550331.1

NEK3-201, Transcript of NIMA related kinase 3, humanhuman

TSL 2

Gene NEK3, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-201ENST00000550331 EXOSC10Q01780 885 aaKnown RBP8.68□□□□□ -1.02
NEK3-201ENST00000550331 PAK2Q13177 524 aa8.68□□□□□ -1.02
NEK3-201ENST00000550331 ITGB3BPQ13352 177 aaPredicted RBP8.68□□□□□ -1.02
NEK3-201ENST00000550331 KRT32Q14532 448 aa8.68□□□□□ -1.02
NEK3-201ENST00000550331 PLCB4Q15147 1175 aa8.68□□□□□ -1.02
NEK3-201ENST00000550331 CLUL1Q15846 466 aa8.68□□□□□ -1.02
NEK3-201ENST00000550331 NAALADL2Q58DX5 795 aa8.68□□□□□ -1.02
NEK3-201ENST00000550331 HERC4Q5GLZ8 1057 aaPredicted RBP8.68□□□□□ -1.02
NEK3-201ENST00000550331 NPAS4Q8IUM7 802 aa8.68□□□□□ -1.02
NEK3-201ENST00000550331 NME8Q8N427 588 aa8.68□□□□□ -1.02
NEK3-201ENST00000550331 LINC01599Q8WXQ3 324 aa8.68□□□□□ -1.02
NEK3-201ENST00000550331 P2RX5Q93086 422 aa8.68□□□□□ -1.02
NEK3-201ENST00000550331 POP1Q99575 1024 aaKnown RBP8.68□□□□□ -1.02
NEK3-201ENST00000550331 REPIN1Q9BWE0 567 aaKnown RBP8.68□□□□□ -1.02
NEK3-201ENST00000550331 ANO3Q9BYT9 981 aa8.68□□□□□ -1.02
NEK3-201ENST00000550331 BARHL2Q9NY43 387 aa8.68□□□□□ -1.02
NEK3-201ENST00000550331 BRPF3Q9ULD4 1205 aa8.68□□□□□ -1.02
NEK3-201ENST00000550331 TRPV2Q9Y5S1 764 aa8.68□□□□□ -1.02
NEK3-201ENST00000550331 ZFHX2Q9C0A1 2572 aaPredicted RBP8.68□□□□□ -1.02
NEK3-201ENST00000550331 PTPRZ1P23471 2315 aaPredicted RBP8.68□□□□□ -1.02
NEK3-201ENST00000550331 CACNA1AO00555 2505 aa8.68□□□□□ -1.02
NEK3-201ENST00000550331 KLF18A0A0U1RQI7 1052 aa8.67□□□□□ -1.02
NEK3-201ENST00000550331 ESYT2A0FGR8 921 aa8.67□□□□□ -1.02
NEK3-201ENST00000550331 SMCO2A6NFE2 343 aa8.67□□□□□ -1.02
NEK3-201ENST00000550331 GOLGA8AA7E2F4 631 aa8.67□□□□□ -1.02
NEK3-201ENST00000550331 GOLGA8BA8MQT2 603 aa8.67□□□□□ -1.02
NEK3-201ENST00000550331 HBP1O60381 514 aa8.67□□□□□ -1.02
NEK3-201ENST00000550331 CCNE2O96020 404 aa8.67□□□□□ -1.02
NEK3-201ENST00000550331 IGHA1P01876 353 aa8.67□□□□□ -1.02
NEK3-201ENST00000550331 COL1A2P08123 1366 aa8.67□□□□□ -1.02
NEK3-201ENST00000550331 STAG3L1P0CL83 205 aa8.67□□□□□ -1.02
NEK3-201ENST00000550331 KRT76Q01546 638 aa8.67□□□□□ -1.02
NEK3-201ENST00000550331 SMAD2Q15796 467 aaKnown RBP8.67□□□□□ -1.02
NEK3-201ENST00000550331 FAM160B1Q5W0V3 765 aa8.67□□□□□ -1.02
NEK3-201ENST00000550331 MCTP2Q6DN12 878 aa8.67□□□□□ -1.02
NEK3-201ENST00000550331 MTHFD1LQ6UB35 978 aa8.67□□□□□ -1.02
NEK3-201ENST00000550331 RNF135Q8IUD6 432 aa8.67□□□□□ -1.02
NEK3-201ENST00000550331 ATP8B4Q8TF62 1192 aa8.67□□□□□ -1.02
NEK3-201ENST00000550331 TRAPPC12Q8WVT3 735 aa8.67□□□□□ -1.02
NEK3-201ENST00000550331 ZBTB10Q96DT7 871 aa8.67□□□□□ -1.02
NEK3-201ENST00000550331 PGBD1Q96JS3 809 aa8.67□□□□□ -1.02
NEK3-201ENST00000550331 PRRX2Q99811 253 aa8.67□□□□□ -1.02
NEK3-201ENST00000550331 CELF4Q9BZC1 486 aaKnown RBP8.67□□□□□ -1.02
NEK3-201ENST00000550331 PADI3Q9ULW8 664 aa8.67□□□□□ -1.02
NEK3-201ENST00000550331 MRPL42Q9Y6G3 142 aaKnown RBP8.67□□□□□ -1.02
NEK3-201ENST00000550331 NID2Q14112 1375 aa8.66□□□□□ -1.02
NEK3-201ENST00000550331 IGLV3-22A0A075B6J6 115 aa8.66□□□□□ -1.02
NEK3-201ENST00000550331 CCDC196A0A1B0GTZ2 297 aa8.66□□□□□ -1.02
NEK3-201ENST00000550331 TMEM221A6NGB7 291 aa8.66□□□□□ -1.02
NEK3-201ENST00000550331 FAM86B1E9PN63 330 aa8.66□□□□□ -1.02
NEK3-201ENST00000550331 M0R296 226 aa8.66□□□□□ -1.02
NEK3-201ENST00000550331 IPO5O00410 1097 aaKnown RBP8.66□□□□□ -1.02
NEK3-201ENST00000550331 BACH1O14867 736 aa8.66□□□□□ -1.02
NEK3-201ENST00000550331 MBTPS2O43462 519 aa8.66□□□□□ -1.02
NEK3-201ENST00000550331 CDC45O75419 566 aa8.66□□□□□ -1.02
NEK3-201ENST00000550331 CYP3A4P08684 503 aa8.66□□□□□ -1.02
NEK3-201ENST00000550331 FAM86B2P0C5J1 330 aa8.66□□□□□ -1.02
NEK3-201ENST00000550331 VSIG8P0DPA2 414 aa8.66□□□□□ -1.02
NEK3-201ENST00000550331 SCG2P13521 617 aa8.66□□□□□ -1.02
NEK3-201ENST00000550331 CDC27P30260 824 aa8.66□□□□□ -1.02
NEK3-201ENST00000550331 ZNF76P36508 570 aa8.66□□□□□ -1.02
NEK3-201ENST00000550331 LTBRP36941 435 aa8.66□□□□□ -1.02
NEK3-201ENST00000550331 SETQ01105 290 aaPredicted RBP8.66□□□□□ -1.02
NEK3-201ENST00000550331 TMEM62Q0P6H9 643 aa8.66□□□□□ -1.02
NEK3-201ENST00000550331 HYAL1Q12794 435 aa8.66□□□□□ -1.02
NEK3-201ENST00000550331 PFKFB3Q16875 520 aaPredicted RBP8.66□□□□□ -1.02
NEK3-201ENST00000550331 ADCK5Q3MIX3 580 aa8.66□□□□□ -1.02
NEK3-201ENST00000550331 ODR4Q5SWX8 454 aa8.66□□□□□ -1.02
NEK3-201ENST00000550331 MIS18BP1Q6P0N0 1132 aa8.66□□□□□ -1.02
NEK3-201ENST00000550331 ABHD15Q6UXT9 468 aa8.66□□□□□ -1.02
NEK3-201ENST00000550331 CENPQQ7L2Z9 268 aaPredicted RBP8.66□□□□□ -1.02
NEK3-201ENST00000550331 BMP8AQ7Z5Y6 402 aa8.66□□□□□ -1.02
NEK3-201ENST00000550331 RTN4RL1Q86UN2 441 aaPredicted RBP8.66□□□□□ -1.02
NEK3-201ENST00000550331 SUGP1Q8IWZ8 645 aaKnown RBP8.66□□□□□ -1.02
NEK3-201ENST00000550331 CRYGNQ8WXF5 182 aa8.66□□□□□ -1.02
NEK3-201ENST00000550331 EDAQ92838 391 aa8.66□□□□□ -1.02
NEK3-201ENST00000550331 PPP2R3CQ969Q6 453 aa8.66□□□□□ -1.02
NEK3-201ENST00000550331 PBXIP1Q96AQ6 731 aa8.66□□□□□ -1.02
NEK3-201ENST00000550331 TCEANC2Q96MN5 208 aa8.66□□□□□ -1.02
NEK3-201ENST00000550331 TMX1Q9H3N1 280 aa8.66□□□□□ -1.02
NEK3-201ENST00000550331 C1orf112Q9NSG2 853 aa8.66□□□□□ -1.02
NEK3-201ENST00000550331 FAM217BQ9NTX9 383 aaPredicted RBP8.66□□□□□ -1.02
NEK3-201ENST00000550331 FAM86C1Q9NVL1 165 aa8.66□□□□□ -1.02
NEK3-201ENST00000550331 TMEM260Q9NX78 707 aa8.66□□□□□ -1.02
NEK3-201ENST00000550331 PLAGL2Q9UPG8 496 aa8.66□□□□□ -1.02
NEK3-201ENST00000550331 MYO15AQ9UKN7 3530 aa8.65□□□□□ -1.02
NEK3-201ENST00000550331 DHX15O43143 795 aaKnown RBP8.65□□□□□ -1.02
NEK3-201ENST00000550331 TBX10O75333 385 aa8.65□□□□□ -1.02
NEK3-201ENST00000550331 RPS6KA5O75582 802 aa8.65□□□□□ -1.02
NEK3-201ENST00000550331 KLRC1P26715 233 aa8.65□□□□□ -1.02
NEK3-201ENST00000550331 SARSP49591 514 aaKnown RBP8.65□□□□□ -1.02
NEK3-201ENST00000550331 METAP2P50579 478 aaKnown RBP eCLIP8.65□□□□□ -1.02
NEK3-201ENST00000550331 FGD1P98174 961 aa8.65□□□□□ -1.02
NEK3-201ENST00000550331 PLCB2Q00722 1185 aa8.65□□□□□ -1.02
NEK3-201ENST00000550331 FOXK2Q01167 660 aa8.65□□□□□ -1.02
NEK3-201ENST00000550331 DLX2Q07687 328 aaPredicted RBP8.65□□□□□ -1.02
NEK3-201ENST00000550331 TCF15Q12870 199 aa8.65□□□□□ -1.02
NEK3-201ENST00000550331 SMAD4Q13485 552 aaKnown RBP8.65□□□□□ -1.02
NEK3-201ENST00000550331 CAMK1Q14012 370 aa8.65□□□□□ -1.02
NEK3-201ENST00000550331 PKN1Q16512 942 aa8.65□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms