RNA–Protein interactions for RNA: ENST00000546744.5

PTCH1-212, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 4,389 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-212ENST00000546744 TTC1Q99614 292 aa13.68□□□□□ -0.22
PTCH1-212ENST00000546744 DDX47Q9H0S4 455 aaKnown RBP13.68□□□□□ -0.22
PTCH1-212ENST00000546744 MTO1Q9Y2Z2 717 aaKnown RBP13.68□□□□□ -0.22
PTCH1-212ENST00000546744 CHN1P15882 459 aa13.67□□□□□ -0.22
PTCH1-212ENST00000546744 RFC4P35249 363 aa13.67□□□□□ -0.22
PTCH1-212ENST00000546744 PRCPP42785 496 aa13.67□□□□□ -0.22
PTCH1-212ENST00000546744 SLC18A3Q16572 532 aa13.67□□□□□ -0.22
PTCH1-212ENST00000546744 RABGAP1LQ5R372 815 aa13.67□□□□□ -0.22
PTCH1-212ENST00000546744 ODR4Q5SWX8 454 aa13.67□□□□□ -0.22
PTCH1-212ENST00000546744 CRELD2Q6UXH1 353 aaPredicted RBP13.67□□□□□ -0.22
PTCH1-212ENST00000546744 MAP3K15Q6ZN16 1313 aa13.67□□□□□ -0.22
PTCH1-212ENST00000546744 GPIHBP1Q8IV16 184 aa13.67□□□□□ -0.22
PTCH1-212ENST00000546744 EIF1ADQ8N9N8 165 aaKnown RBP13.67□□□□□ -0.22
PTCH1-212ENST00000546744 SYN2Q92777 582 aaPredicted RBP13.67□□□□□ -0.22
PTCH1-212ENST00000546744 SAYSD1Q9NPB0 183 aa13.67□□□□□ -0.22
PTCH1-212ENST00000546744 CRB1P82279 1406 aa13.67□□□□□ -0.22
PTCH1-212ENST00000546744 UBE4BO95155 1302 aa13.67□□□□□ -0.22
PTCH1-212ENST00000546744 TCP11X1B4DZS4 312 aa13.67□□□□□ -0.22
PTCH1-212ENST00000546744 GFAPP14136 432 aa13.67□□□□□ -0.22
PTCH1-212ENST00000546744 ITIH2P19823 946 aa13.67□□□□□ -0.22
PTCH1-212ENST00000546744 SERPINB3P29508 390 aa13.67□□□□□ -0.22
PTCH1-212ENST00000546744 TFDP2Q14188 446 aa13.67□□□□□ -0.22
PTCH1-212ENST00000546744 POLR3CQ9BUI4 534 aaPredicted RBP13.67□□□□□ -0.22
PTCH1-212ENST00000546744 MLXIPQ9HAP2 919 aa13.67□□□□□ -0.22
PTCH1-212ENST00000546744 HDAC6Q9UBN7 1215 aa13.67□□□□□ -0.22
PTCH1-212ENST00000546744 KRT1P04264 644 aa13.67□□□□□ -0.22
PTCH1-212ENST00000546744 SERPINB2P05120 415 aa13.67□□□□□ -0.22
PTCH1-212ENST00000546744 NQO1P15559 274 aaKnown RBP13.67□□□□□ -0.22
PTCH1-212ENST00000546744 PRPSAP1Q14558 356 aa13.67□□□□□ -0.22
PTCH1-212ENST00000546744 SHC4Q6S5L8 630 aa13.67□□□□□ -0.22
PTCH1-212ENST00000546744 RGS9BPQ6ZS82 235 aa13.67□□□□□ -0.22
PTCH1-212ENST00000546744 DGKHQ86XP1 1220 aa13.67□□□□□ -0.22
PTCH1-212ENST00000546744 TERB1Q8NA31 727 aa13.67□□□□□ -0.22
PTCH1-212ENST00000546744 ZNF483Q8TF39 744 aaPredicted RBP13.67□□□□□ -0.22
PTCH1-212ENST00000546744 CEP19Q96LK0 163 aa13.67□□□□□ -0.22
PTCH1-212ENST00000546744 DLGAP2Q9P1A6 1054 aa13.67□□□□□ -0.22
PTCH1-212ENST00000546744 ECE1P42892 770 aa13.67□□□□□ -0.22
PTCH1-212ENST00000546744 TRAPPC11Q7Z392 1133 aa13.67□□□□□ -0.22
PTCH1-212ENST00000546744 NACC1Q96RE7 527 aa13.67□□□□□ -0.22
PTCH1-212ENST00000546744 TEKT3Q9BXF9 490 aa13.67□□□□□ -0.22
PTCH1-212ENST00000546744 KIF9Q9HAQ2 790 aa13.67□□□□□ -0.22
PTCH1-212ENST00000546744 GDAQ9Y2T3 454 aa13.67□□□□□ -0.22
PTCH1-212ENST00000546744 TOPAZ1Q8N9V7 1692 aa13.66□□□□□ -0.22
PTCH1-212ENST00000546744 GNGT2O14610 69 aa13.66□□□□□ -0.22
PTCH1-212ENST00000546744 TNNC2P02585 160 aa13.66□□□□□ -0.22
PTCH1-212ENST00000546744 NCF2P19878 526 aaPredicted RBP13.66□□□□□ -0.22
PTCH1-212ENST00000546744 IGBP1P78318 339 aa13.66□□□□□ -0.22
PTCH1-212ENST00000546744 CNGA3Q16281 694 aa13.66□□□□□ -0.22
PTCH1-212ENST00000546744 BBS9Q3SYG4 887 aa13.66□□□□□ -0.22
PTCH1-212ENST00000546744 PAPD7Q5XG87 772 aaKnown RBP13.66□□□□□ -0.22
PTCH1-212ENST00000546744 RNF207Q6ZRF8 634 aa13.66□□□□□ -0.22
PTCH1-212ENST00000546744 CCDC17Q96LX7 622 aa13.66□□□□□ -0.22
PTCH1-212ENST00000546744 ANLNQ9NQW6 1124 aa13.66□□□□□ -0.22
PTCH1-212ENST00000546744 HESX1Q9UBX0 185 aa13.66□□□□□ -0.22
PTCH1-212ENST00000546744 PIK3C2AO00443 1686 aa13.66□□□□□ -0.22
PTCH1-212ENST00000546744 FAM47DPA6NHR8 397 aa13.66□□□□□ -0.22
PTCH1-212ENST00000546744 TTLL1O95922 423 aa13.66□□□□□ -0.22
PTCH1-212ENST00000546744 SCTRP47872 440 aa13.66□□□□□ -0.22
PTCH1-212ENST00000546744 CDK17Q00537 523 aa13.66□□□□□ -0.22
PTCH1-212ENST00000546744 USPL1Q5W0Q7 1092 aa13.66□□□□□ -0.22
PTCH1-212ENST00000546744 KLC3Q6P597 504 aa13.66□□□□□ -0.22
PTCH1-212ENST00000546744 SETD3Q86TU7 594 aaPredicted RBP13.66□□□□□ -0.22
PTCH1-212ENST00000546744 LCA5Q86VQ0 697 aa13.66□□□□□ -0.22
PTCH1-212ENST00000546744 METTL16Q86W50 562 aaKnown RBP13.66□□□□□ -0.22
PTCH1-212ENST00000546744 ING2Q9H160 280 aa13.66□□□□□ -0.22
PTCH1-212ENST00000546744 ZBTB21Q9ULJ3 1066 aa13.66□□□□□ -0.22
PTCH1-212ENST00000546744 ABCB11O95342 1321 aa13.66□□□□□ -0.22
PTCH1-212ENST00000546744 C16orf96A6NNT2 1141 aa13.66□□□□□ -0.22
PTCH1-212ENST00000546744 ANP32DO95626 131 aa13.66□□□□□ -0.22
PTCH1-212ENST00000546744 MYBL1P10243 752 aa13.66□□□□□ -0.22
PTCH1-212ENST00000546744 DMP1Q13316 513 aaPredicted RBP13.66□□□□□ -0.22
PTCH1-212ENST00000546744 PTPROQ16827 1216 aa13.66□□□□□ -0.22
PTCH1-212ENST00000546744 DNAJC24Q6P3W2 148 aa13.66□□□□□ -0.22
PTCH1-212ENST00000546744 LRRC43Q8N309 656 aa13.66□□□□□ -0.22
PTCH1-212ENST00000546744 RDH13Q8NBN7 331 aa13.66□□□□□ -0.22
PTCH1-212ENST00000546744 ENGASEQ8NFI3 743 aa13.66□□□□□ -0.22
PTCH1-212ENST00000546744 NAF1Q96HR8 494 aaKnown RBP13.66□□□□□ -0.22
PTCH1-212ENST00000546744 BLOC1S6Q9UL45 172 aa13.66□□□□□ -0.22
PTCH1-212ENST00000546744 MRPL11Q9Y3B7 192 aaKnown RBP13.66□□□□□ -0.22
PTCH1-212ENST00000546744 RTCBQ9Y3I0 505 aaKnown RBP13.66□□□□□ -0.22
PTCH1-212ENST00000546744 ESYT3A0FGR9 886 aa13.65□□□□□ -0.22
PTCH1-212ENST00000546744 MED7O43513 233 aa13.65□□□□□ -0.22
PTCH1-212ENST00000546744 SASH1O94885 1247 aa13.65□□□□□ -0.22
PTCH1-212ENST00000546744 LIG4P49917 911 aa13.65□□□□□ -0.22
PTCH1-212ENST00000546744 SKOR1P84550 965 aa13.65□□□□□ -0.22
PTCH1-212ENST00000546744 LRRC8BQ6P9F7 803 aa13.65□□□□□ -0.22
PTCH1-212ENST00000546744 RAD9BQ6WBX8 426 aa13.65□□□□□ -0.22
PTCH1-212ENST00000546744 SH2D3CQ8N5H7 860 aa13.65□□□□□ -0.22
PTCH1-212ENST00000546744 OSBP2Q969R2 916 aa13.65□□□□□ -0.22
PTCH1-212ENST00000546744 TTC17Q96AE7 1141 aa13.65□□□□□ -0.22
PTCH1-212ENST00000546744 RNPC3Q96LT9 517 aaKnown RBP13.65□□□□□ -0.22
PTCH1-212ENST00000546744 CDCA7Q9BWT1 371 aaPredicted RBP13.65□□□□□ -0.22
PTCH1-212ENST00000546744 GCOM2Q9BZD3 368 aaPredicted RBP13.65□□□□□ -0.22
PTCH1-212ENST00000546744 KLC2Q9H0B6 622 aa13.65□□□□□ -0.22
PTCH1-212ENST00000546744 TLR7Q9NYK1 1049 aaKnown RBP13.65□□□□□ -0.22
PTCH1-212ENST00000546744 ZHX2Q9Y6X8 837 aa13.65□□□□□ -0.22
PTCH1-212ENST00000546744 ATXN2Q99700 1313 aaKnown RBP13.65□□□□□ -0.22
PTCH1-212ENST00000546744 KLHL2O95198 593 aa13.65□□□□□ -0.22
PTCH1-212ENST00000546744 FIGNQ5HY92 759 aa13.65□□□□□ -0.22
PTCH1-212ENST00000546744 NLRX1Q86UT6 975 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms