RNA–Protein interactions for RNA: ENST00000540998.5

CDC42SE1-207, Transcript of CDC42 small effector 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CDC42SE1, Length 3,181 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42SE1-207ENST00000540998 SNHG28P0DPA3 235 aa11.24□□□□□ -0.61
CDC42SE1-207ENST00000540998 JAM2P57087 298 aa11.24□□□□□ -0.61
CDC42SE1-207ENST00000540998 DR1Q01658 176 aa11.24□□□□□ -0.61
CDC42SE1-207ENST00000540998 POU5F1Q01860 360 aaKnown RBP11.24□□□□□ -0.61
CDC42SE1-207ENST00000540998 PHLDB2Q86SQ0 1253 aa11.24□□□□□ -0.61
CDC42SE1-207ENST00000540998 LRRC34Q8IZ02 419 aa11.24□□□□□ -0.61
CDC42SE1-207ENST00000540998 TCP11Q8WWU5 503 aa11.24□□□□□ -0.61
CDC42SE1-207ENST00000540998 RPGRQ92834 1020 aaKnown RBP11.24□□□□□ -0.61
CDC42SE1-207ENST00000540998 KAT5Q92993 513 aa11.24□□□□□ -0.61
CDC42SE1-207ENST00000540998 PRMT1Q99873 361 aaKnown RBP11.24□□□□□ -0.61
CDC42SE1-207ENST00000540998 ELAC2Q9BQ52 826 aaKnown RBP11.24□□□□□ -0.61
CDC42SE1-207ENST00000540998 NT5C3AQ9H0P0 336 aa11.24□□□□□ -0.61
CDC42SE1-207ENST00000540998 USP40Q9NVE5 1235 aa11.24□□□□□ -0.61
CDC42SE1-207ENST00000540998 DNAJC12Q9UKB3 198 aa11.24□□□□□ -0.61
CDC42SE1-207ENST00000540998 ATF5Q9Y2D1 282 aaPredicted RBP11.24□□□□□ -0.61
CDC42SE1-207ENST00000540998 RPS6KA4O75676 772 aa11.24□□□□□ -0.61
CDC42SE1-207ENST00000540998 MMEP08473 750 aa11.24□□□□□ -0.61
CDC42SE1-207ENST00000540998 USP8P40818 1118 aa11.24□□□□□ -0.61
CDC42SE1-207ENST00000540998 GSCP56915 257 aaPredicted RBP11.24□□□□□ -0.61
CDC42SE1-207ENST00000540998 SETQ01105 290 aaPredicted RBP11.24□□□□□ -0.61
CDC42SE1-207ENST00000540998 GABPAQ06546 454 aa11.24□□□□□ -0.61
CDC42SE1-207ENST00000540998 HIBCHQ6NVY1 386 aaPredicted RBP11.24□□□□□ -0.61
CDC42SE1-207ENST00000540998 LRIG3Q6UXM1 1119 aa11.24□□□□□ -0.61
CDC42SE1-207ENST00000540998 SEPT14Q6ZU15 432 aa11.24□□□□□ -0.61
CDC42SE1-207ENST00000540998 PARP9Q8IXQ6 854 aa11.24□□□□□ -0.61
CDC42SE1-207ENST00000540998 HES6Q96HZ4 224 aa11.24□□□□□ -0.61
CDC42SE1-207ENST00000540998 ADAM7Q9H2U9 754 aa11.24□□□□□ -0.61
CDC42SE1-207ENST00000540998 DNAJC18Q9H819 358 aa11.24□□□□□ -0.61
CDC42SE1-207ENST00000540998 PKD2L1Q9P0L9 805 aa11.24□□□□□ -0.61
CDC42SE1-207ENST00000540998 SERPINB13Q9UIV8 391 aa11.24□□□□□ -0.61
CDC42SE1-207ENST00000540998 AMFRQ9UKV5 643 aa11.24□□□□□ -0.61
CDC42SE1-207ENST00000540998 COL14A1Q05707 1796 aaKnown RBP11.24□□□□□ -0.61
CDC42SE1-207ENST00000540998 ADAMTSL1Q8N6G6 1762 aa11.24□□□□□ -0.61
CDC42SE1-207ENST00000540998 CDR1P51861 262 aa11.24□□□□□ -0.61
CDC42SE1-207ENST00000540998 DLG4P78352 724 aa11.24□□□□□ -0.61
CDC42SE1-207ENST00000540998 TNIP1Q15025 636 aa11.24□□□□□ -0.61
CDC42SE1-207ENST00000540998 EMC10Q5UCC4 262 aa11.24□□□□□ -0.61
CDC42SE1-207ENST00000540998 TTC27Q6P3X3 843 aa11.24□□□□□ -0.61
CDC42SE1-207ENST00000540998 TPH2Q8IWU9 490 aa11.24□□□□□ -0.61
CDC42SE1-207ENST00000540998 ETNPPLQ8TBG4 499 aa11.24□□□□□ -0.61
CDC42SE1-207ENST00000540998 N4BP2L2Q92802 583 aaPredicted RBP11.24□□□□□ -0.61
CDC42SE1-207ENST00000540998 PWWP2AQ96N64 755 aa11.24□□□□□ -0.61
CDC42SE1-207ENST00000540998 XPO6Q96QU8 1125 aaKnown RBP11.24□□□□□ -0.61
CDC42SE1-207ENST00000540998 LRRC27Q9C0I9 530 aa11.24□□□□□ -0.61
CDC42SE1-207ENST00000540998 PCIF1Q9H4Z3 704 aa11.24□□□□□ -0.61
CDC42SE1-207ENST00000540998 BAIAP2L1Q9UHR4 511 aa11.24□□□□□ -0.61
CDC42SE1-207ENST00000540998 GGA1Q9UJY5 639 aa11.24□□□□□ -0.61
CDC42SE1-207ENST00000540998 DNM3Q9UQ16 869 aa11.24□□□□□ -0.61
CDC42SE1-207ENST00000540998 KDM3AQ9Y4C1 1321 aa11.23□□□□□ -0.61
CDC42SE1-207ENST00000540998 RDXP35241 583 aaKnown RBP11.23□□□□□ -0.61
CDC42SE1-207ENST00000540998 PPP1R7Q15435 360 aa11.23□□□□□ -0.61
CDC42SE1-207ENST00000540998 PRR5LQ6MZQ0 368 aa11.23□□□□□ -0.61
CDC42SE1-207ENST00000540998 ZDHHC24Q6UX98 284 aa11.23□□□□□ -0.61
CDC42SE1-207ENST00000540998 TBC1D1Q86TI0 1168 aaPredicted RBP11.23□□□□□ -0.61
CDC42SE1-207ENST00000540998 PNMA8AQ86V59 439 aaPredicted RBP11.23□□□□□ -0.61
CDC42SE1-207ENST00000540998 MYCT1Q8N699 235 aa11.23□□□□□ -0.61
CDC42SE1-207ENST00000540998 ARFGAP2Q8N6H7 521 aa11.23□□□□□ -0.61
CDC42SE1-207ENST00000540998 LENG9Q96B70 501 aa11.23□□□□□ -0.61
CDC42SE1-207ENST00000540998 GPR88Q9GZN0 384 aa11.23□□□□□ -0.61
CDC42SE1-207ENST00000540998 ABCF3Q9NUQ8 709 aa11.23□□□□□ -0.61
CDC42SE1-207ENST00000540998 CTNNAL1Q9UBT7 734 aa11.23□□□□□ -0.61
CDC42SE1-207ENST00000540998 L3MBTL1Q9Y468 752 aa11.23□□□□□ -0.61
CDC42SE1-207ENST00000540998 ZMYM2Q9UBW7 1377 aa11.23□□□□□ -0.61
CDC42SE1-207ENST00000540998 VIMP08670 466 aaKnown RBP11.23□□□□□ -0.61
CDC42SE1-207ENST00000540998 CLTAP09496 248 aa11.23□□□□□ -0.61
CDC42SE1-207ENST00000540998 EEF2P13639 858 aaKnown RBP11.23□□□□□ -0.61
CDC42SE1-207ENST00000540998 RPL21P46778 160 aaKnown RBP11.23□□□□□ -0.61
CDC42SE1-207ENST00000540998 EDRF1Q3B7T1 1238 aa11.23□□□□□ -0.61
CDC42SE1-207ENST00000540998 HYIQ5T013 277 aa11.23□□□□□ -0.61
CDC42SE1-207ENST00000540998 GKAP1Q5VSY0 366 aaPredicted RBP11.23□□□□□ -0.61
CDC42SE1-207ENST00000540998 DAB2IPQ5VWQ8 1189 aa11.23□□□□□ -0.61
CDC42SE1-207ENST00000540998 NSMFQ6X4W1 530 aa11.23□□□□□ -0.61
CDC42SE1-207ENST00000540998 RUFY4Q6ZNE9 571 aa11.23□□□□□ -0.61
CDC42SE1-207ENST00000540998 FAM196AQ6ZSG2 479 aa11.23□□□□□ -0.61
CDC42SE1-207ENST00000540998 PAXIP1Q6ZW49 1069 aaPredicted RBP11.23□□□□□ -0.61
CDC42SE1-207ENST00000540998 FRMD5Q7Z6J6 570 aa11.23□□□□□ -0.61
CDC42SE1-207ENST00000540998 SLFN11Q7Z7L1 901 aa11.23□□□□□ -0.61
CDC42SE1-207ENST00000540998 JAMLQ86YT9 394 aa11.23□□□□□ -0.61
CDC42SE1-207ENST00000540998 FAM186BQ8IYM0 893 aa11.23□□□□□ -0.61
CDC42SE1-207ENST00000540998 FAM118BQ9BPY3 351 aa11.23□□□□□ -0.61
CDC42SE1-207ENST00000540998 ZDHHC18Q9NUE0 388 aa11.23□□□□□ -0.61
CDC42SE1-207ENST00000540998 SUCLA2Q9P2R7 463 aaPredicted RBP11.23□□□□□ -0.61
CDC42SE1-207ENST00000540998 NENFQ9UMX5 172 aa11.23□□□□□ -0.61
CDC42SE1-207ENST00000540998 AGAP1Q9UPQ3 857 aa11.23□□□□□ -0.61
CDC42SE1-207ENST00000540998 COL5A3P25940 1745 aaPredicted RBP11.23□□□□□ -0.61
CDC42SE1-207ENST00000540998 SPATA31A5Q5VU36 1347 aa11.23□□□□□ -0.61
CDC42SE1-207ENST00000540998 SPATA31A7Q8IWB4 1347 aa11.23□□□□□ -0.61
CDC42SE1-207ENST00000540998 IGKV6D-41A0A0C4DH26 115 aa11.22□□□□□ -0.61
CDC42SE1-207ENST00000540998 A8MUI8 341 aa11.22□□□□□ -0.61
CDC42SE1-207ENST00000540998 FOXN3O00409 490 aaPredicted RBP11.22□□□□□ -0.61
CDC42SE1-207ENST00000540998 MSH4O15457 936 aa11.22□□□□□ -0.61
CDC42SE1-207ENST00000540998 SKAP2O75563 359 aaPredicted RBP11.22□□□□□ -0.61
CDC42SE1-207ENST00000540998 STAT1P42224 750 aa11.22□□□□□ -0.61
CDC42SE1-207ENST00000540998 TRIP13Q15645 432 aaPredicted RBP11.22□□□□□ -0.61
CDC42SE1-207ENST00000540998 EPM2AIP1Q7L775 607 aaPredicted RBP11.22□□□□□ -0.61
CDC42SE1-207ENST00000540998 YTHDF3Q7Z739 585 aaKnown RBP11.22□□□□□ -0.61
CDC42SE1-207ENST00000540998 TAX1BP1Q86VP1 789 aa11.22□□□□□ -0.61
CDC42SE1-207ENST00000540998 RASGEF1CQ8N431 466 aa11.22□□□□□ -0.61
CDC42SE1-207ENST00000540998 KIF2BQ8N4N8 673 aa11.22□□□□□ -0.61
CDC42SE1-207ENST00000540998 CCDC26Q8TAB7 109 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms