RNA–Protein interactions for RNA: ENST00000534647.1

CTNND1-238, Transcript of catenin delta 1, human

TSL 5

Gene CTNND1, Length 866 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CTNND1-238	ENST00000534647	MICAL1	Q8TDZ2	1067 aa		13.09	□□□□□ -0.31
CTNND1-238	ENST00000534647	CALR3	Q96L12	384 aa	Known RBP	13.09	□□□□□ -0.31
CTNND1-238	ENST00000534647	PRRX2	Q99811	253 aa		13.09	□□□□□ -0.31
CTNND1-238	ENST00000534647	ZMYND12	Q9H0C1	365 aa		13.09	□□□□□ -0.31
CTNND1-238	ENST00000534647	CWH43	Q9H720	699 aa		13.09	□□□□□ -0.31
CTNND1-238	ENST00000534647	TYW1	Q9NV66	732 aa	Known RBP	13.09	□□□□□ -0.31
CTNND1-238	ENST00000534647	USP15	Q9Y4E8	981 aa	Predicted RBP	13.09	□□□□□ -0.31
CTNND1-238	ENST00000534647	ZNF318	Q5VUA4	2279 aa		13.09	□□□□□ -0.31
CTNND1-238	ENST00000534647	CCDC196	A0A1B0GTZ2	297 aa		13.08	□□□□□ -0.32
CTNND1-238	ENST00000534647	TBKBP1	A7MCY6	615 aa		13.08	□□□□□ -0.32
CTNND1-238	ENST00000534647	MAGEB2	O15479	319 aa		13.08	□□□□□ -0.32
CTNND1-238	ENST00000534647	HOXA2	O43364	376 aa		13.08	□□□□□ -0.32
CTNND1-238	ENST00000534647	PPFIA3	O75145	1194 aa		13.08	□□□□□ -0.32
CTNND1-238	ENST00000534647	LAG3	P18627	525 aa		13.08	□□□□□ -0.32
CTNND1-238	ENST00000534647	CDC27	P30260	824 aa		13.08	□□□□□ -0.32
CTNND1-238	ENST00000534647	CIITA	P33076	1130 aa		13.08	□□□□□ -0.32
CTNND1-238	ENST00000534647	ERVFC1	P60507	584 aa		13.08	□□□□□ -0.32
CTNND1-238	ENST00000534647	SET	Q01105	290 aa	Predicted RBP	13.08	□□□□□ -0.32
CTNND1-238	ENST00000534647	KRT32	Q14532	448 aa		13.08	□□□□□ -0.32
CTNND1-238	ENST00000534647	COLGALT1	Q8NBJ5	622 aa		13.08	□□□□□ -0.32
CTNND1-238	ENST00000534647	ZNF577	Q9BSK1	485 aa		13.08	□□□□□ -0.32
CTNND1-238	ENST00000534647	TMEM117	Q9H0C3	514 aa		13.08	□□□□□ -0.32
CTNND1-238	ENST00000534647	S1PR5	Q9H228	398 aa		13.08	□□□□□ -0.32
CTNND1-238	ENST00000534647	ATP6V0A4	Q9HBG4	840 aa		13.08	□□□□□ -0.32
CTNND1-238	ENST00000534647	BARX2	Q9UMQ3	279 aa	Predicted RBP	13.08	□□□□□ -0.32
CTNND1-238	ENST00000534647	CEP131	Q9UPN4	1083 aa		13.08	□□□□□ -0.32
CTNND1-238	ENST00000534647	GINS2	Q9Y248	185 aa		13.08	□□□□□ -0.32
CTNND1-238	ENST00000534647	PCDHA10	Q9Y5I2	948 aa		13.08	□□□□□ -0.32
CTNND1-238	ENST00000534647	TECTA	O75443	2155 aa		13.07	□□□□□ -0.32
CTNND1-238	ENST00000534647	TMEM221	A6NGB7	291 aa		13.07	□□□□□ -0.32
CTNND1-238	ENST00000534647	GOLGA8A	A7E2F4	631 aa		13.07	□□□□□ -0.32
CTNND1-238	ENST00000534647	GOLGA8B	A8MQT2	603 aa		13.07	□□□□□ -0.32
CTNND1-238	ENST00000534647		M0R296	226 aa		13.07	□□□□□ -0.32
CTNND1-238	ENST00000534647	DDX39A	O00148	427 aa	Known RBP	13.07	□□□□□ -0.32
CTNND1-238	ENST00000534647	PSAP	P07602	524 aa		13.07	□□□□□ -0.32
CTNND1-238	ENST00000534647	KIZ	Q2M2Z5	673 aa		13.07	□□□□□ -0.32
CTNND1-238	ENST00000534647	ADCK5	Q3MIX3	580 aa		13.07	□□□□□ -0.32
CTNND1-238	ENST00000534647	JAKMIP3	Q5VZ66	844 aa		13.07	□□□□□ -0.32
CTNND1-238	ENST00000534647	FAM228A	Q86W67	206 aa		13.07	□□□□□ -0.32
CTNND1-238	ENST00000534647	THNSL1	Q8IYQ7	743 aa		13.07	□□□□□ -0.32
CTNND1-238	ENST00000534647	FBXL16	Q8N461	479 aa		13.07	□□□□□ -0.32
CTNND1-238	ENST00000534647	LINC01465	Q8N7H1	131 aa		13.07	□□□□□ -0.32
CTNND1-238	ENST00000534647	VN1R2	Q8NFZ6	395 aa		13.07	□□□□□ -0.32
CTNND1-238	ENST00000534647	CCDC12	Q8WUD4	166 aa	Predicted RBP	13.07	□□□□□ -0.32
CTNND1-238	ENST00000534647	MRPS27	Q92552	414 aa	Known RBP	13.07	□□□□□ -0.32
CTNND1-238	ENST00000534647	PBXIP1	Q96AQ6	731 aa		13.07	□□□□□ -0.32
CTNND1-238	ENST00000534647	BACH2	Q9BYV9	841 aa		13.07	□□□□□ -0.32
CTNND1-238	ENST00000534647	ADAMTS10	Q9H324	1103 aa		13.07	□□□□□ -0.32
CTNND1-238	ENST00000534647	C6orf50	Q9HD87	102 aa		13.07	□□□□□ -0.32
CTNND1-238	ENST00000534647	NGRN	Q9NPE2	291 aa	Known RBP	13.07	□□□□□ -0.32
CTNND1-238	ENST00000534647	PUF60	Q9UHX1	559 aa	Known RBP	13.07	□□□□□ -0.32
CTNND1-238	ENST00000534647	UST	Q9Y2C2	406 aa		13.07	□□□□□ -0.32
CTNND1-238	ENST00000534647	PCDHGC5	Q9Y5F6	944 aa		13.07	□□□□□ -0.32
CTNND1-238	ENST00000534647	KLF18	A0A0U1RQI7	1052 aa		13.06	□□□□□ -0.32
CTNND1-238	ENST00000534647	PER2	O15055	1255 aa		13.06	□□□□□ -0.32
CTNND1-238	ENST00000534647	CSPG5	O95196	566 aa		13.06	□□□□□ -0.32
CTNND1-238	ENST00000534647	SRGAP2B	P0DMP2	458 aa		13.06	□□□□□ -0.32
CTNND1-238	ENST00000534647	HOXB8	P17481	243 aa	Predicted RBP	13.06	□□□□□ -0.32
CTNND1-238	ENST00000534647	EIF4B	P23588	611 aa	Known RBP	13.06	□□□□□ -0.32
CTNND1-238	ENST00000534647	GNA11	P29992	359 aa		13.06	□□□□□ -0.32
CTNND1-238	ENST00000534647	ADD1	P35611	737 aa	Known RBP	13.06	□□□□□ -0.32
CTNND1-238	ENST00000534647	SPOUT1	Q5T280	376 aa	Known RBP	13.06	□□□□□ -0.32
CTNND1-238	ENST00000534647	KCNB2	Q92953	911 aa		13.06	□□□□□ -0.32
CTNND1-238	ENST00000534647	FAM167A	Q96KS9	214 aa		13.06	□□□□□ -0.32
CTNND1-238	ENST00000534647	CASD1	Q96PB1	797 aa		13.06	□□□□□ -0.32
CTNND1-238	ENST00000534647	OSMR	Q99650	979 aa		13.06	□□□□□ -0.32
CTNND1-238	ENST00000534647	KIAA1671	Q9BY89	1806 aa		13.06	□□□□□ -0.32
CTNND1-238	ENST00000534647	PRPF3	O43395	683 aa	Known RBP	13.05	□□□□□ -0.32
CTNND1-238	ENST00000534647	EOMES	O95936	686 aa		13.05	□□□□□ -0.32
CTNND1-238	ENST00000534647	VTN	P04004	478 aa		13.05	□□□□□ -0.32
CTNND1-238	ENST00000534647	FGFR1	P11362	822 aa		13.05	□□□□□ -0.32
CTNND1-238	ENST00000534647	TMOD1	P28289	359 aa		13.05	□□□□□ -0.32
CTNND1-238	ENST00000534647	PPM1A	P35813	382 aa		13.05	□□□□□ -0.32
CTNND1-238	ENST00000534647	SIGLEC14	Q08ET2	396 aa		13.05	□□□□□ -0.32
CTNND1-238	ENST00000534647	EFCAB12	Q6NXP0	572 aa		13.05	□□□□□ -0.32
CTNND1-238	ENST00000534647	ANKRD54	Q6NXT1	300 aa		13.05	□□□□□ -0.32
CTNND1-238	ENST00000534647	KCNT2	Q6UVM3	1135 aa		13.05	□□□□□ -0.32
CTNND1-238	ENST00000534647	LRRC55	Q6ZSA7	311 aa		13.05	□□□□□ -0.32
CTNND1-238	ENST00000534647	CKAP2L	Q8IYA6	745 aa		13.05	□□□□□ -0.32
CTNND1-238	ENST00000534647	REXO1	Q8N1G1	1221 aa	Known RBP	13.05	□□□□□ -0.32
CTNND1-238	ENST00000534647	FBXL6	Q8N531	539 aa		13.05	□□□□□ -0.32
CTNND1-238	ENST00000534647	METTL13	Q8N6R0	699 aa		13.05	□□□□□ -0.32
CTNND1-238	ENST00000534647	RSPH1	Q8WYR4	309 aa		13.05	□□□□□ -0.32
CTNND1-238	ENST00000534647	TCEANC2	Q96MN5	208 aa		13.05	□□□□□ -0.32
CTNND1-238	ENST00000534647	NRBP2	Q9NSY0	501 aa		13.05	□□□□□ -0.32
CTNND1-238	ENST00000534647	RNF19A	Q9NV58	838 aa		13.05	□□□□□ -0.32
CTNND1-238	ENST00000534647	NID2	Q14112	1375 aa		13.05	□□□□□ -0.32
CTNND1-238	ENST00000534647	TRIO	O75962	3097 aa		13.04	□□□□□ -0.32
CTNND1-238	ENST00000534647	FNDC1	Q4ZHG4	1894 aa	Predicted RBP	13.04	□□□□□ -0.32
CTNND1-238	ENST00000534647	LOXHD1	Q8IVV2	1947 aa		13.04	□□□□□ -0.32
CTNND1-238	ENST00000534647		A0A0U1RQF3	1178 aa		13.04	□□□□□ -0.32
CTNND1-238	ENST00000534647	WDR64	B1ANS9	1081 aa		13.04	□□□□□ -0.32
CTNND1-238	ENST00000534647	ADAMTS3	O15072	1205 aa		13.04	□□□□□ -0.32
CTNND1-238	ENST00000534647	ZSCAN20	P17040	1043 aa	Predicted RBP	13.04	□□□□□ -0.32
CTNND1-238	ENST00000534647	RFC5	P40937	340 aa		13.04	□□□□□ -0.32
CTNND1-238	ENST00000534647	USP11	P51784	963 aa		13.04	□□□□□ -0.32
CTNND1-238	ENST00000534647	PTPN5	P54829	565 aa		13.04	□□□□□ -0.32
CTNND1-238	ENST00000534647	NLRP11	P59045	1033 aa	Known RBP	13.04	□□□□□ -0.32
CTNND1-238	ENST00000534647	RBM10	P98175	930 aa	Known RBP	13.04	□□□□□ -0.32
CTNND1-238	ENST00000534647	CDC42EP1	Q00587	391 aa		13.04	□□□□□ -0.32

Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms