RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 EMID1Q96A84 441 aaPredicted RBP23.39■■□□□ 1.33
VPS28-212ENST00000530836 DUSP9Q99956 384 aaKnown RBP23.39■■□□□ 1.33
VPS28-212ENST00000530836 SRRTQ9BXP5 876 aaKnown RBP23.39■■□□□ 1.33
VPS28-212ENST00000530836 AZI2Q9H6S1 392 aa23.39■■□□□ 1.33
VPS28-212ENST00000530836 TBC1D7Q9P0N9 293 aa23.39■■□□□ 1.33
VPS28-212ENST00000530836 IMPACTQ9P2X3 320 aa23.39■■□□□ 1.33
VPS28-212ENST00000530836 LIMA1Q9UHB6 759 aaKnown RBP23.39■■□□□ 1.33
VPS28-212ENST00000530836 PPME1Q9Y570 386 aa23.39■■□□□ 1.33
VPS28-212ENST00000530836 MYADML2A6NDP7 307 aa23.38■■□□□ 1.33
VPS28-212ENST00000530836 DNM1LO00429 736 aa23.38■■□□□ 1.33
VPS28-212ENST00000530836 HIP1RO75146 1068 aa23.38■■□□□ 1.33
VPS28-212ENST00000530836 DGAT1O75907 488 aa23.38■■□□□ 1.33
VPS28-212ENST00000530836 STBD1O95210 358 aa23.38■■□□□ 1.33
VPS28-212ENST00000530836 MYCNP04198 464 aaPredicted RBP23.38■■□□□ 1.33
VPS28-212ENST00000530836 IRX5P78411 483 aaPredicted RBP23.38■■□□□ 1.33
VPS28-212ENST00000530836 ALCAMQ13740 583 aa23.38■■□□□ 1.33
VPS28-212ENST00000530836 FSCN1Q16658 493 aaKnown RBP23.38■■□□□ 1.33
VPS28-212ENST00000530836 TCP11X2Q5H9J9 407 aa23.38■■□□□ 1.33
VPS28-212ENST00000530836 GNASQ5JWF2 1037 aa23.38■■□□□ 1.33
VPS28-212ENST00000530836 UTP14CQ5TAP6 766 aaKnown RBP23.38■■□□□ 1.33
VPS28-212ENST00000530836 CCSAPQ6IQ19 270 aaPredicted RBP23.38■■□□□ 1.33
VPS28-212ENST00000530836 SCFD1Q8WVM8 642 aa23.38■■□□□ 1.33
VPS28-212ENST00000530836 CEP170P1Q96L14 293 aa23.38■■□□□ 1.33
VPS28-212ENST00000530836 KCNJ18B7U540 433 aa23.37■■□□□ 1.33
VPS28-212ENST00000530836 USO1O60763 962 aaKnown RBP23.37■■□□□ 1.33
VPS28-212ENST00000530836 SLC26A2P50443 739 aa23.37■■□□□ 1.33
VPS28-212ENST00000530836 KCNJ12Q14500 433 aa23.37■■□□□ 1.33
VPS28-212ENST00000530836 ODR4Q5SWX8 454 aa23.37■■□□□ 1.33
VPS28-212ENST00000530836 FAM178BQ8IXR5 827 aa23.37■■□□□ 1.33
VPS28-212ENST00000530836 MCPH1Q8NEM0 835 aa23.37■■□□□ 1.33
VPS28-212ENST00000530836 ZNF507Q8TCN5 953 aa23.37■■□□□ 1.33
VPS28-212ENST00000530836 FAM167AQ96KS9 214 aa23.37■■□□□ 1.33
VPS28-212ENST00000530836 GPR20Q99678 358 aa23.37■■□□□ 1.33
VPS28-212ENST00000530836 TSEN34Q9BSV6 310 aaKnown RBP23.37■■□□□ 1.33
VPS28-212ENST00000530836 C17orf75Q9HAS0 396 aa23.37■■□□□ 1.33
VPS28-212ENST00000530836 NRBP2Q9NSY0 501 aa23.37■■□□□ 1.33
VPS28-212ENST00000530836 KCNG1Q9UIX4 513 aa23.37■■□□□ 1.33
VPS28-212ENST00000530836 A0A1B0GTH6 734 aa23.37■■□□□ 1.33
VPS28-212ENST00000530836 A6NJR5 290 aa23.37■■□□□ 1.33
VPS28-212ENST00000530836 OATP04181 439 aa23.37■■□□□ 1.33
VPS28-212ENST00000530836 TCF7P36402 384 aaPredicted RBP23.37■■□□□ 1.33
VPS28-212ENST00000530836 STAT5BP51692 787 aa23.37■■□□□ 1.33
VPS28-212ENST00000530836 FKBP3Q00688 224 aaKnown RBP23.37■■□□□ 1.33
VPS28-212ENST00000530836 BEX3Q00994 111 aa23.37■■□□□ 1.33
VPS28-212ENST00000530836 MAPK7Q13164 816 aa23.37■■□□□ 1.33
VPS28-212ENST00000530836 KNOP1Q1ED39 458 aaKnown RBP23.37■■□□□ 1.33
VPS28-212ENST00000530836 EDRF1Q3B7T1 1238 aa23.37■■□□□ 1.33
VPS28-212ENST00000530836 HSP90AA4PQ58FG1 418 aa23.37■■□□□ 1.33
VPS28-212ENST00000530836 PCSK9Q8NBP7 692 aaKnown RBP23.37■■□□□ 1.33
VPS28-212ENST00000530836 SPATA33Q96N06 139 aa23.37■■□□□ 1.33
VPS28-212ENST00000530836 NIFKQ9BYG3 293 aaKnown RBP23.37■■□□□ 1.33
VPS28-212ENST00000530836 CYP26B1Q9NR63 512 aa23.37■■□□□ 1.33
VPS28-212ENST00000530836 PCDHB13Q9Y5F0 798 aa23.37■■□□□ 1.33
VPS28-212ENST00000530836 KBTBD13C9JR72 458 aa23.36■■□□□ 1.33
VPS28-212ENST00000530836 SORBS3O60504 671 aa23.36■■□□□ 1.33
VPS28-212ENST00000530836 LGR5O75473 907 aa23.36■■□□□ 1.33
VPS28-212ENST00000530836 GCNT3O95395 438 aa23.36■■□□□ 1.33
VPS28-212ENST00000530836 PLS3P13797 630 aa23.36■■□□□ 1.33
VPS28-212ENST00000530836 CPT1AP50416 773 aa23.36■■□□□ 1.33
VPS28-212ENST00000530836 KCNA10Q16322 511 aa23.36■■□□□ 1.33
VPS28-212ENST00000530836 ZCWPW2Q504Y3 356 aa23.36■■□□□ 1.33
VPS28-212ENST00000530836 PLPPR4Q7Z2D5 763 aa23.36■■□□□ 1.33
VPS28-212ENST00000530836 ZNF720Q7Z2F6 126 aa23.36■■□□□ 1.33
VPS28-212ENST00000530836 UBE2Q1Q7Z7E8 422 aa23.36■■□□□ 1.33
VPS28-212ENST00000530836 SPC24Q8NBT2 197 aa23.36■■□□□ 1.33
VPS28-212ENST00000530836 GLIS3Q8NEA6 775 aa23.36■■□□□ 1.33
VPS28-212ENST00000530836 KIFAP3Q92845 792 aa23.36■■□□□ 1.33
VPS28-212ENST00000530836 KCTD10Q9H3F6 313 aa23.36■■□□□ 1.33
VPS28-212ENST00000530836 SEPT9Q9UHD8 586 aaPredicted RBP23.36■■□□□ 1.33
VPS28-212ENST00000530836 DOCK5Q9H7D0 1870 aa23.35■■□□□ 1.33
VPS28-212ENST00000530836 EMSYQ7Z589 1322 aa23.35■■□□□ 1.33
VPS28-212ENST00000530836 PDXKO00764 312 aa23.35■■□□□ 1.33
VPS28-212ENST00000530836 TPM2P07951 284 aa23.35■■□□□ 1.33
VPS28-212ENST00000530836 NPEPPSP55786 919 aa23.35■■□□□ 1.33
VPS28-212ENST00000530836 NR1I3Q14994 352 aa23.35■■□□□ 1.33
VPS28-212ENST00000530836 BRDTQ58F21 947 aaPredicted RBP23.35■■□□□ 1.33
VPS28-212ENST00000530836 PLA2G4FQ68DD2 849 aa23.35■■□□□ 1.33
VPS28-212ENST00000530836 APTXQ7Z2E3 356 aaKnown RBP23.35■■□□□ 1.33
VPS28-212ENST00000530836 DAW1Q8N136 415 aa23.35■■□□□ 1.33
VPS28-212ENST00000530836 PPTC7Q8NI37 304 aa23.35■■□□□ 1.33
VPS28-212ENST00000530836 DIS3LQ8TF46 1054 aaKnown RBP23.35■■□□□ 1.33
VPS28-212ENST00000530836 AFG1LQ8WV93 481 aa23.35■■□□□ 1.33
VPS28-212ENST00000530836 CEP63Q96MT8 703 aa23.35■■□□□ 1.33
VPS28-212ENST00000530836 NAP1L5Q96NT1 182 aaPredicted RBP23.35■■□□□ 1.33
VPS28-212ENST00000530836 TRAF3IP3Q9Y228 551 aa23.35■■□□□ 1.33
VPS28-212ENST00000530836 TELO2Q9Y4R8 837 aa23.35■■□□□ 1.33
VPS28-212ENST00000530836 WDR81Q562E7 1941 aa23.34■■□□□ 1.33
VPS28-212ENST00000530836 SFI1A8K8P3 1242 aa23.34■■□□□ 1.33
VPS28-212ENST00000530836 CALUO43852 315 aaPredicted RBP23.34■■□□□ 1.33
VPS28-212ENST00000530836 ZEB2O60315 1214 aa23.34■■□□□ 1.33
VPS28-212ENST00000530836 RTP1P59025 263 aa23.34■■□□□ 1.33
VPS28-212ENST00000530836 KRT31Q15323 416 aa23.34■■□□□ 1.33
VPS28-212ENST00000530836 IRF2BP1Q8IU81 584 aa23.34■■□□□ 1.33
VPS28-212ENST00000530836 EXOC8Q8IYI6 725 aa23.34■■□□□ 1.33
VPS28-212ENST00000530836 PAWRQ96IZ0 340 aaKnown RBP23.34■■□□□ 1.33
VPS28-212ENST00000530836 FGFBP2Q9BYJ0 223 aa23.34■■□□□ 1.33
VPS28-212ENST00000530836 ST6GALNAC4Q9H4F1 302 aa23.34■■□□□ 1.33
VPS28-212ENST00000530836 PHF24Q9UPV7 400 aa23.34■■□□□ 1.33
VPS28-212ENST00000530836 MOXD2PA6NHM9 499 aa23.33■■□□□ 1.33
VPS28-212ENST00000530836 GNA14O95837 355 aa23.33■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms