RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 TBCAO75347 108 aaKnown RBP20.8■□□□□ 0.92
VPS28-207ENST00000526977 ATP4AP20648 1035 aa20.8■□□□□ 0.92
VPS28-207ENST00000526977 LRRC63Q05C16 580 aa20.8■□□□□ 0.92
VPS28-207ENST00000526977 GJC2Q5T442 439 aaPredicted RBP20.8■□□□□ 0.92
VPS28-207ENST00000526977 FOXR2Q6PJQ5 311 aa20.8■□□□□ 0.92
VPS28-207ENST00000526977 TRMT1LQ7Z2T5 733 aaKnown RBP20.8■□□□□ 0.92
VPS28-207ENST00000526977 MYRIPQ8NFW9 859 aa20.8■□□□□ 0.92
VPS28-207ENST00000526977 CD99L2Q8TCZ2 262 aa20.8■□□□□ 0.92
VPS28-207ENST00000526977 FAM167AQ96KS9 214 aa20.8■□□□□ 0.92
VPS28-207ENST00000526977 CEP170P1Q96L14 293 aa20.8■□□□□ 0.92
VPS28-207ENST00000526977 BEGAINQ9BUH8 593 aa20.8■□□□□ 0.92
VPS28-207ENST00000526977 NIFKQ9BYG3 293 aaKnown RBP20.8■□□□□ 0.92
VPS28-207ENST00000526977 FGFBP2Q9BYJ0 223 aa20.8■□□□□ 0.92
VPS28-207ENST00000526977 Q9Y3F1 56 aa20.8■□□□□ 0.92
VPS28-207ENST00000526977 A0A1W2PQC6 194 aa20.8■□□□□ 0.92
VPS28-207ENST00000526977 PRKCSHP14314 528 aaPredicted RBP20.8■□□□□ 0.92
VPS28-207ENST00000526977 GAP43P17677 238 aa20.8■□□□□ 0.92
VPS28-207ENST00000526977 DNM2P50570 870 aa20.8■□□□□ 0.92
VPS28-207ENST00000526977 TRIB2Q92519 343 aa20.8■□□□□ 0.92
VPS28-207ENST00000526977 SEPT9Q9UHD8 586 aaPredicted RBP20.8■□□□□ 0.92
VPS28-207ENST00000526977 GNEQ9Y223 722 aaKnown RBP20.8■□□□□ 0.92
VPS28-207ENST00000526977 NPEPPSP55786 919 aa20.79■□□□□ 0.92
VPS28-207ENST00000526977 CNGA4Q8IV77 575 aa20.79■□□□□ 0.92
VPS28-207ENST00000526977 REXO1L1PQ8IX06 675 aa20.79■□□□□ 0.92
VPS28-207ENST00000526977 OR6J1Q8NGC5 347 aa20.79■□□□□ 0.92
VPS28-207ENST00000526977 AFG1LQ8WV93 481 aa20.79■□□□□ 0.92
VPS28-207ENST00000526977 ZHX3Q9H4I2 956 aa20.79■□□□□ 0.92
VPS28-207ENST00000526977 CYP26B1Q9NR63 512 aa20.79■□□□□ 0.92
VPS28-207ENST00000526977 PES1O00541 588 aaKnown RBP20.78■□□□□ 0.92
VPS28-207ENST00000526977 CCP110O43303 1012 aa20.78■□□□□ 0.92
VPS28-207ENST00000526977 DGAT1O75907 488 aa20.78■□□□□ 0.92
VPS28-207ENST00000526977 TPM1P09493 284 aa20.78■□□□□ 0.92
VPS28-207ENST00000526977 MTIF2P46199 727 aaKnown RBP20.78■□□□□ 0.92
VPS28-207ENST00000526977 CAP1Q01518 475 aa20.78■□□□□ 0.92
VPS28-207ENST00000526977 MIIPQ5JXC2 388 aa20.78■□□□□ 0.92
VPS28-207ENST00000526977 PLA2G4FQ68DD2 849 aa20.78■□□□□ 0.92
VPS28-207ENST00000526977 BBXQ8WY36 941 aaPredicted RBP20.78■□□□□ 0.92
VPS28-207ENST00000526977 CCDC51Q96ER9 411 aa20.78■□□□□ 0.92
VPS28-207ENST00000526977 PARVGQ9HBI0 331 aa20.78■□□□□ 0.92
VPS28-207ENST00000526977 SEL1LQ9UBV2 794 aa20.78■□□□□ 0.92
VPS28-207ENST00000526977 PPME1Q9Y570 386 aa20.78■□□□□ 0.92
VPS28-207ENST00000526977 PAXBP1Q9Y5B6 917 aa20.78■□□□□ 0.92
VPS28-207ENST00000526977 TMEM150BA6NC51 233 aa20.78■□□□□ 0.92
VPS28-207ENST00000526977 FAM13AO94988 1023 aa20.78■□□□□ 0.92
VPS28-207ENST00000526977 FGFR1OPO95684 399 aaKnown RBP20.78■□□□□ 0.92
VPS28-207ENST00000526977 AKR1A1P14550 325 aa20.78■□□□□ 0.92
VPS28-207ENST00000526977 C1QTNF8P60827 252 aa20.78■□□□□ 0.92
VPS28-207ENST00000526977 TRIM14Q14142 442 aa20.78■□□□□ 0.92
VPS28-207ENST00000526977 ZCWPW2Q504Y3 356 aa20.78■□□□□ 0.92
VPS28-207ENST00000526977 ERAP1Q9NZ08 941 aa20.78■□□□□ 0.92
VPS28-207ENST00000526977 DYNC1LI2O43237 492 aaPredicted RBP20.77■□□□□ 0.92
VPS28-207ENST00000526977 USO1O60763 962 aaKnown RBP20.77■□□□□ 0.92
VPS28-207ENST00000526977 HOXD8P13378 290 aaPredicted RBP20.77■□□□□ 0.92
VPS28-207ENST00000526977 ZNF131P52739 623 aa20.77■□□□□ 0.92
VPS28-207ENST00000526977 LRRC55Q6ZSA7 311 aa20.77■□□□□ 0.92
VPS28-207ENST00000526977 ZNF296Q8WUU4 475 aaPredicted RBP20.77■□□□□ 0.92
VPS28-207ENST00000526977 SCFD1Q8WVM8 642 aa20.77■□□□□ 0.92
VPS28-207ENST00000526977 TSG101Q99816 390 aa20.77■□□□□ 0.92
VPS28-207ENST00000526977 NOC4LQ9BVI4 516 aaKnown RBP20.77■□□□□ 0.92
VPS28-207ENST00000526977 NAA15Q9BXJ9 866 aaKnown RBP20.77■□□□□ 0.92
VPS28-207ENST00000526977 OLFML3Q9NRN5 406 aa20.77■□□□□ 0.92
VPS28-207ENST00000526977 PPP2R2CQ9Y2T4 447 aa20.77■□□□□ 0.92
VPS28-207ENST00000526977 MYH9P35579 1960 aaKnown RBP20.77■□□□□ 0.91
VPS28-207ENST00000526977 RIOK3O14730 519 aaKnown RBP20.77■□□□□ 0.91
VPS28-207ENST00000526977 ADCY6O43306 1168 aa20.77■□□□□ 0.91
VPS28-207ENST00000526977 KIF20AO95235 890 aa20.77■□□□□ 0.91
VPS28-207ENST00000526977 FECHP22830 423 aa20.77■□□□□ 0.91
VPS28-207ENST00000526977 PRMT2P55345 433 aa20.77■□□□□ 0.91
VPS28-207ENST00000526977 TBC1D8BQ0IIM8 1120 aa20.77■□□□□ 0.91
VPS28-207ENST00000526977 DGKDQ16760 1214 aa20.77■□□□□ 0.91
VPS28-207ENST00000526977 TOGARAM2Q6ZUX3 1019 aa20.77■□□□□ 0.91
VPS28-207ENST00000526977 MCPH1Q8NEM0 835 aa20.77■□□□□ 0.91
VPS28-207ENST00000526977 ATP8B4Q8TF62 1192 aa20.77■□□□□ 0.91
VPS28-207ENST00000526977 ZNF592Q92610 1267 aa20.77■□□□□ 0.91
VPS28-207ENST00000526977 DRC1Q96MC2 740 aa20.77■□□□□ 0.91
VPS28-207ENST00000526977 SH2D3AQ9BRG2 576 aa20.77■□□□□ 0.91
VPS28-207ENST00000526977 WDR81Q562E7 1941 aa20.76■□□□□ 0.91
VPS28-207ENST00000526977 A6NJR5 290 aa20.76■□□□□ 0.91
VPS28-207ENST00000526977 RSPH10B2B2RC85 870 aa20.76■□□□□ 0.91
VPS28-207ENST00000526977 KIF2AO00139 706 aaPredicted RBP20.76■□□□□ 0.91
VPS28-207ENST00000526977 ZSCAN12O43309 604 aa20.76■□□□□ 0.91
VPS28-207ENST00000526977 HIP1RO75146 1068 aa20.76■□□□□ 0.91
VPS28-207ENST00000526977 LGALS2P05162 132 aa20.76■□□□□ 0.91
VPS28-207ENST00000526977 RSPH10BP0C881 870 aa20.76■□□□□ 0.91
VPS28-207ENST00000526977 CYBAP13498 195 aa20.76■□□□□ 0.91
VPS28-207ENST00000526977 MYCT1Q8N699 235 aa20.76■□□□□ 0.91
VPS28-207ENST00000526977 LARSQ9P2J5 1176 aaKnown RBP20.76■□□□□ 0.91
VPS28-207ENST00000526977 ZSWIM8A7E2V4 1837 aa20.75■□□□□ 0.91
VPS28-207ENST00000526977 SOWAHDA6NJG2 315 aa20.75■□□□□ 0.91
VPS28-207ENST00000526977 MMP3P08254 477 aa20.75■□□□□ 0.91
VPS28-207ENST00000526977 MTF1Q14872 753 aa20.75■□□□□ 0.91
VPS28-207ENST00000526977 MTERF2Q49AM1 385 aa20.75■□□□□ 0.91
VPS28-207ENST00000526977 BRDTQ58F21 947 aaPredicted RBP20.75■□□□□ 0.91
VPS28-207ENST00000526977 TLK2Q86UE8 772 aa20.75■□□□□ 0.91
VPS28-207ENST00000526977 EXOC8Q8IYI6 725 aa20.75■□□□□ 0.91
VPS28-207ENST00000526977 PXYLP1Q8TE99 480 aa20.75■□□□□ 0.91
VPS28-207ENST00000526977 AP5M1Q9H0R1 490 aa20.75■□□□□ 0.91
VPS28-207ENST00000526977 KCTD10Q9H3F6 313 aa20.75■□□□□ 0.91
VPS28-207ENST00000526977 PDLIM7Q9NR12 457 aa20.75■□□□□ 0.91
VPS28-207ENST00000526977 ABHD10Q9NUJ1 306 aa20.75■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms