RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 PPP1R3FQ6ZSY5 799 aaPredicted RBP23.11■■□□□ 1.29
VPS28-205ENST00000526204 LXNQ9BS40 222 aa23.11■■□□□ 1.29
VPS28-205ENST00000526204 TAF1DQ9H5J8 278 aaPredicted RBP23.11■■□□□ 1.29
VPS28-205ENST00000526204 STXBP5LQ9Y2K9 1186 aa23.11■■□□□ 1.29
VPS28-205ENST00000526204 CLRN2A0PK11 232 aa23.11■■□□□ 1.29
VPS28-205ENST00000526204 ZSCAN5CA6NGD5 496 aaPredicted RBP23.11■■□□□ 1.29
VPS28-205ENST00000526204 RFX1P22670 979 aa23.11■■□□□ 1.29
VPS28-205ENST00000526204 CUL1Q13616 776 aa23.11■■□□□ 1.29
VPS28-205ENST00000526204 COG2Q14746 738 aa23.11■■□□□ 1.29
VPS28-205ENST00000526204 DRAP1Q14919 205 aaPredicted RBP23.11■■□□□ 1.29
VPS28-205ENST00000526204 LDHDQ86WU2 507 aa23.11■■□□□ 1.29
VPS28-205ENST00000526204 CD302Q8IX05 232 aa23.11■■□□□ 1.29
VPS28-205ENST00000526204 KLHL7Q8IXQ5 586 aa23.11■■□□□ 1.29
VPS28-205ENST00000526204 OGFOD1Q8N543 542 aa23.11■■□□□ 1.29
VPS28-205ENST00000526204 CCDC43Q96MW1 224 aaKnown RBP23.11■■□□□ 1.29
VPS28-205ENST00000526204 CAPS2Q9BXY5 557 aa23.11■■□□□ 1.29
VPS28-205ENST00000526204 ISCUQ9H1K1 167 aa23.11■■□□□ 1.29
VPS28-205ENST00000526204 IKZF4Q9H2S9 585 aa23.11■■□□□ 1.29
VPS28-205ENST00000526204 WRAP73Q9P2S5 460 aaPredicted RBP23.11■■□□□ 1.29
VPS28-205ENST00000526204 RRP15Q9Y3B9 282 aaKnown RBP23.11■■□□□ 1.29
VPS28-205ENST00000526204 TMCO5BA8MYB1 307 aa23.1■■□□□ 1.29
VPS28-205ENST00000526204 FAM153BP0C7A2 387 aa23.1■■□□□ 1.29
VPS28-205ENST00000526204 BCRP11274 1271 aa23.1■■□□□ 1.29
VPS28-205ENST00000526204 CYP2J2P51589 502 aa23.1■■□□□ 1.29
VPS28-205ENST00000526204 FAM153CQ494X1 144 aa23.1■■□□□ 1.29
VPS28-205ENST00000526204 DAAM2Q86T65 1068 aa23.1■■□□□ 1.29
VPS28-205ENST00000526204 RASGEF1CQ8N431 466 aa23.1■■□□□ 1.29
VPS28-205ENST00000526204 METTL13Q8N6R0 699 aa23.1■■□□□ 1.29
VPS28-205ENST00000526204 MXRA8Q9BRK3 442 aa23.1■■□□□ 1.29
VPS28-205ENST00000526204 STRA6Q9BX79 667 aa23.1■■□□□ 1.29
VPS28-205ENST00000526204 INTS2Q9H0H0 1204 aaKnown RBP23.1■■□□□ 1.29
VPS28-205ENST00000526204 APEX2Q9UBZ4 518 aa23.1■■□□□ 1.29
VPS28-205ENST00000526204 FAM153AQ9UHL3 310 aa23.1■■□□□ 1.29
VPS28-205ENST00000526204 ZBTB48P10074 688 aaPredicted RBP23.09■■□□□ 1.29
VPS28-205ENST00000526204 IRAK1P51617 712 aa23.09■■□□□ 1.29
VPS28-205ENST00000526204 GALCP54803 685 aa23.09■■□□□ 1.29
VPS28-205ENST00000526204 FKBP1CQ5VVH2 108 aa23.09■■□□□ 1.29
VPS28-205ENST00000526204 SYCP3Q8IZU3 236 aa23.09■■□□□ 1.29
VPS28-205ENST00000526204 TMEM253P0C7T8 217 aa23.09■■□□□ 1.29
VPS28-205ENST00000526204 MYL7Q01449 175 aa23.09■■□□□ 1.29
VPS28-205ENST00000526204 BFSP1Q12934 665 aa23.09■■□□□ 1.29
VPS28-205ENST00000526204 ALCAMQ13740 583 aa23.09■■□□□ 1.29
VPS28-205ENST00000526204 CBWD6Q4V339 395 aa23.09■■□□□ 1.29
VPS28-205ENST00000526204 CBWD3Q5JTY5 395 aa23.09■■□□□ 1.29
VPS28-205ENST00000526204 CBWD5Q5RIA9 395 aa23.09■■□□□ 1.29
VPS28-205ENST00000526204 NT5DC3Q86UY8 548 aa23.09■■□□□ 1.29
VPS28-205ENST00000526204 KSR1Q8IVT5 923 aa23.09■■□□□ 1.29
VPS28-205ENST00000526204 C1orf131Q8NDD1 294 aaKnown RBP23.09■■□□□ 1.29
VPS28-205ENST00000526204 LNX1Q8TBB1 728 aaPredicted RBP23.09■■□□□ 1.29
VPS28-205ENST00000526204 GOLPH3Q9H4A6 298 aa23.09■■□□□ 1.29
VPS28-205ENST00000526204 NCANO14594 1321 aa23.08■■□□□ 1.29
VPS28-205ENST00000526204 EXOC3O60645 756 aa23.08■■□□□ 1.29
VPS28-205ENST00000526204 HIP1RO75146 1068 aa23.08■■□□□ 1.29
VPS28-205ENST00000526204 PPP1R37O75864 691 aa23.08■■□□□ 1.29
VPS28-205ENST00000526204 MAPTP10636 758 aaKnown RBP23.08■■□□□ 1.29
VPS28-205ENST00000526204 IRX5P78411 483 aaPredicted RBP23.08■■□□□ 1.29
VPS28-205ENST00000526204 SKOR1P84550 965 aa23.08■■□□□ 1.29
VPS28-205ENST00000526204 SPDYE2Q495Y8 402 aa23.08■■□□□ 1.29
VPS28-205ENST00000526204 TTMPQ5BVD1 217 aa23.08■■□□□ 1.29
VPS28-205ENST00000526204 FOXR1Q6PIV2 292 aa23.08■■□□□ 1.29
VPS28-205ENST00000526204 TMEM174Q8WUU8 243 aa23.08■■□□□ 1.29
VPS28-205ENST00000526204 RFFLQ8WZ73 363 aa23.08■■□□□ 1.29
VPS28-205ENST00000526204 HES6Q96HZ4 224 aa23.08■■□□□ 1.29
VPS28-205ENST00000526204 NOC2LQ9Y3T9 749 aaKnown RBP23.08■■□□□ 1.29
VPS28-205ENST00000526204 CNTNAP1P78357 1384 aa23.08■■□□□ 1.28
VPS28-205ENST00000526204 MYO1CO00159 1063 aa23.08■■□□□ 1.28
VPS28-205ENST00000526204 HSPA9P38646 679 aaKnown RBP23.08■■□□□ 1.28
VPS28-205ENST00000526204 HSD17B4P51659 736 aa23.08■■□□□ 1.28
VPS28-205ENST00000526204 TNIP1Q15025 636 aa23.08■■□□□ 1.28
VPS28-205ENST00000526204 NIPA1Q7RTP0 329 aa23.08■■□□□ 1.28
VPS28-205ENST00000526204 DNAAF5Q86Y56 855 aa23.08■■□□□ 1.28
VPS28-205ENST00000526204 GLYCTKQ8IVS8 523 aa23.08■■□□□ 1.28
VPS28-205ENST00000526204 CTNNBL1Q8WYA6 563 aaPredicted RBP23.08■■□□□ 1.28
VPS28-205ENST00000526204 VTI1AQ96AJ9 217 aa23.08■■□□□ 1.28
VPS28-205ENST00000526204 ARL8AQ96BM9 186 aa23.08■■□□□ 1.28
VPS28-205ENST00000526204 GMLQ99445 158 aa23.08■■□□□ 1.28
VPS28-205ENST00000526204 SYT11Q9BT88 431 aa23.08■■□□□ 1.28
VPS28-205ENST00000526204 LARSQ9P2J5 1176 aaKnown RBP23.08■■□□□ 1.28
VPS28-205ENST00000526204 RSPH14Q9UHP6 348 aa23.08■■□□□ 1.28
VPS28-205ENST00000526204 AMFRQ9UKV5 643 aa23.08■■□□□ 1.28
VPS28-205ENST00000526204 DIS3Q9Y2L1 958 aaKnown RBP23.08■■□□□ 1.28
VPS28-205ENST00000526204 KRIT1O00522 736 aa23.07■■□□□ 1.28
VPS28-205ENST00000526204 SART1O43290 800 aaKnown RBP23.07■■□□□ 1.28
VPS28-205ENST00000526204 KRT13P13646 458 aa23.07■■□□□ 1.28
VPS28-205ENST00000526204 GUCY2FP51841 1108 aa23.07■■□□□ 1.28
VPS28-205ENST00000526204 MAPK7Q13164 816 aa23.07■■□□□ 1.28
VPS28-205ENST00000526204 OLIG1Q8TAK6 271 aa23.07■■□□□ 1.28
VPS28-205ENST00000526204 TRERF1Q96PN7 1200 aa23.07■■□□□ 1.28
VPS28-205ENST00000526204 SLITRK6Q9H5Y7 841 aa23.07■■□□□ 1.28
VPS28-205ENST00000526204 TMEM206Q9H813 350 aa23.07■■□□□ 1.28
VPS28-205ENST00000526204 P4HBP07237 508 aaKnown RBP23.06■■□□□ 1.28
VPS28-205ENST00000526204 CAP2P40123 477 aa23.06■■□□□ 1.28
VPS28-205ENST00000526204 ZYXQ15942 572 aaKnown RBP23.06■■□□□ 1.28
VPS28-205ENST00000526204 BANK1Q8NDB2 785 aa23.06■■□□□ 1.28
VPS28-205ENST00000526204 GPR88Q9GZN0 384 aa23.06■■□□□ 1.28
VPS28-205ENST00000526204 TTC7AQ9ULT0 858 aaPredicted RBP23.06■■□□□ 1.28
VPS28-205ENST00000526204 C21orf2O43822 256 aa23.06■■□□□ 1.28
VPS28-205ENST00000526204 ICAM1P05362 532 aa23.06■■□□□ 1.28
VPS28-205ENST00000526204 TRIM49P0CI25 452 aa23.06■■□□□ 1.28
VPS28-205ENST00000526204 TRIM49CP0CI26 452 aa23.06■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms