RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-216ENST00000525293 IFT57Q9NWB7 429 aa3.45□□□□□ -1.86
CD44-216ENST00000525293 OXSMQ9NWU1 459 aa3.45□□□□□ -1.86
CD44-216ENST00000525293 PLA2G3Q9NZ20 509 aa3.45□□□□□ -1.86
CD44-216ENST00000525293 DENND2AQ9ULE3 1009 aa3.45□□□□□ -1.86
CD44-216ENST00000525293 VWA7Q9Y334 891 aa3.45□□□□□ -1.86
CD44-216ENST00000525293 CTDP1Q9Y5B0 961 aaPredicted RBP3.45□□□□□ -1.86
CD44-216ENST00000525293 C2orf78A6NCI8 922 aa3.44□□□□□ -1.86
CD44-216ENST00000525293 FAM83GA6ND36 823 aa3.44□□□□□ -1.86
CD44-216ENST00000525293 ZNF891A8MT65 544 aaPredicted RBP3.44□□□□□ -1.86
CD44-216ENST00000525293 PLSCR1O15162 318 aa3.44□□□□□ -1.86
CD44-216ENST00000525293 SLC26A4O43511 780 aa3.44□□□□□ -1.86
CD44-216ENST00000525293 AKAP8O43823 692 aaKnown RBP3.44□□□□□ -1.86
CD44-216ENST00000525293 APOL3O95236 402 aa3.44□□□□□ -1.86
CD44-216ENST00000525293 TACR2P21452 398 aa3.44□□□□□ -1.86
CD44-216ENST00000525293 MSX2P35548 267 aaPredicted RBP3.44□□□□□ -1.86
CD44-216ENST00000525293 SESN2P58004 480 aaPredicted RBP3.44□□□□□ -1.86
CD44-216ENST00000525293 ADCY1Q08828 1119 aa3.44□□□□□ -1.86
CD44-216ENST00000525293 GRM7Q14831 915 aa3.44□□□□□ -1.86
CD44-216ENST00000525293 MYBPC3Q14896 1274 aa3.44□□□□□ -1.86
CD44-216ENST00000525293 NRN1LQ496H8 165 aa3.44□□□□□ -1.86
CD44-216ENST00000525293 USP39Q53GS9 565 aaKnown RBP3.44□□□□□ -1.86
CD44-216ENST00000525293 CREB3L3Q68CJ9 461 aa3.44□□□□□ -1.86
CD44-216ENST00000525293 ESRP1Q6NXG1 681 aaKnown RBP3.44□□□□□ -1.86
CD44-216ENST00000525293 MAMDC4Q6UXC1 1216 aa3.44□□□□□ -1.86
CD44-216ENST00000525293 LRRTM3Q86VH5 581 aa3.44□□□□□ -1.86
CD44-216ENST00000525293 NME9Q86XW9 330 aa3.44□□□□□ -1.86
CD44-216ENST00000525293 KIF18BQ86Y91 864 aa3.44□□□□□ -1.86
CD44-216ENST00000525293 DHX37Q8IY37 1157 aaKnown RBP3.44□□□□□ -1.86
CD44-216ENST00000525293 ZNF808Q8N4W9 903 aaPredicted RBP3.44□□□□□ -1.86
CD44-216ENST00000525293 SLC16A11Q8NCK7 471 aa3.44□□□□□ -1.86
CD44-216ENST00000525293 OR5AN1Q8NGI8 311 aa3.44□□□□□ -1.86
CD44-216ENST00000525293 UBE2Q2Q8WVN8 375 aa3.44□□□□□ -1.86
CD44-216ENST00000525293 RTF1Q92541 710 aaKnown RBP3.44□□□□□ -1.86
CD44-216ENST00000525293 EXTL1Q92935 676 aa3.44□□□□□ -1.86
CD44-216ENST00000525293 GCDHQ92947 438 aaPredicted RBP3.44□□□□□ -1.86
CD44-216ENST00000525293 NINJ1Q92982 152 aa3.44□□□□□ -1.86
CD44-216ENST00000525293 GFM2Q969S9 779 aaKnown RBP3.44□□□□□ -1.86
CD44-216ENST00000525293 FAM89AQ96GI7 184 aa3.44□□□□□ -1.86
CD44-216ENST00000525293 RPL10LQ96L21 214 aaKnown RBP3.44□□□□□ -1.86
CD44-216ENST00000525293 MTFR1LQ9H019 292 aa3.44□□□□□ -1.86
CD44-216ENST00000525293 NELFAQ9H3P2 528 aa3.44□□□□□ -1.86
CD44-216ENST00000525293 KCMF1Q9P0J7 381 aa3.44□□□□□ -1.86
CD44-216ENST00000525293 SPO11Q9Y5K1 396 aa3.44□□□□□ -1.86
CD44-216ENST00000525293 RBM8AQ9Y5S9 174 aaKnown RBP3.44□□□□□ -1.86
CD44-216ENST00000525293 MRPL42Q9Y6G3 142 aaKnown RBP3.44□□□□□ -1.86
CD44-216ENST00000525293 GOLGA8BA8MQT2 603 aa3.43□□□□□ -1.86
CD44-216ENST00000525293 GAS7O60861 476 aa3.43□□□□□ -1.86
CD44-216ENST00000525293 PRPF6O94906 941 aaKnown RBP3.43□□□□□ -1.86
CD44-216ENST00000525293 F2P00734 622 aa3.43□□□□□ -1.86
CD44-216ENST00000525293 HIBADHP31937 336 aaKnown RBP3.43□□□□□ -1.86
CD44-216ENST00000525293 ADCY7P51828 1080 aa3.43□□□□□ -1.86
CD44-216ENST00000525293 BCAR1P56945 870 aa3.43□□□□□ -1.86
CD44-216ENST00000525293 DSG1Q02413 1049 aa3.43□□□□□ -1.86
CD44-216ENST00000525293 ADCY2Q08462 1091 aa3.43□□□□□ -1.86
CD44-216ENST00000525293 RIN1Q13671 783 aa3.43□□□□□ -1.86
CD44-216ENST00000525293 SAFB2Q14151 953 aaKnown RBP eCLIP3.43□□□□□ -1.86
CD44-216ENST00000525293 PCBP1Q15365 356 aaKnown RBP eCLIP3.43□□□□□ -1.86
CD44-216ENST00000525293 TIGD7Q6NT04 549 aaPredicted RBP3.43□□□□□ -1.86
CD44-216ENST00000525293 CRIP3Q6Q6R5 217 aa3.43□□□□□ -1.86
CD44-216ENST00000525293 SGMS1Q86VZ5 419 aa3.43□□□□□ -1.86
CD44-216ENST00000525293 PHYKPLQ8IUZ5 450 aa3.43□□□□□ -1.86
CD44-216ENST00000525293 NIM1KQ8IY84 436 aa3.43□□□□□ -1.86
CD44-216ENST00000525293 Q8N1X5 172 aa3.43□□□□□ -1.86
CD44-216ENST00000525293 D2HGDHQ8N465 521 aa3.43□□□□□ -1.86
CD44-216ENST00000525293 C7orf31Q8N865 590 aa3.43□□□□□ -1.86
CD44-216ENST00000525293 CHTF18Q8WVB6 975 aa3.43□□□□□ -1.86
CD44-216ENST00000525293 RABGGTAQ92696 567 aa3.43□□□□□ -1.86
CD44-216ENST00000525293 RPGRQ92834 1020 aaKnown RBP3.43□□□□□ -1.86
CD44-216ENST00000525293 NKD2Q969F2 451 aaPredicted RBP3.43□□□□□ -1.86
CD44-216ENST00000525293 DYDC2Q96IM9 177 aa3.43□□□□□ -1.86
CD44-216ENST00000525293 ORAI3Q9BRQ5 295 aa3.43□□□□□ -1.86
CD44-216ENST00000525293 MYL10Q9BUA6 226 aa3.43□□□□□ -1.86
CD44-216ENST00000525293 ZNF341Q9BYN7 854 aa3.43□□□□□ -1.86
CD44-216ENST00000525293 SCAND2PQ9GZW5 306 aaPredicted RBP3.43□□□□□ -1.86
CD44-216ENST00000525293 SLC6A15Q9H2J7 730 aa3.43□□□□□ -1.86
CD44-216ENST00000525293 POFUT1Q9H488 388 aa3.43□□□□□ -1.86
CD44-216ENST00000525293 MSL2Q9HCI7 577 aa3.43□□□□□ -1.86
CD44-216ENST00000525293 TLR9Q9NR96 1032 aa3.43□□□□□ -1.86
CD44-216ENST00000525293 THG1LQ9NWX6 298 aaKnown RBP3.43□□□□□ -1.86
CD44-216ENST00000525293 DNAI1Q9UI46 699 aa3.43□□□□□ -1.86
CD44-216ENST00000525293 A0A1W2PRX2 142 aa3.42□□□□□ -1.86
CD44-216ENST00000525293 PMS2P1A4D2B8 440 aa3.42□□□□□ -1.86
CD44-216ENST00000525293 IGSF3O75054 1194 aa3.42□□□□□ -1.86
CD44-216ENST00000525293 FZD7O75084 574 aa3.42□□□□□ -1.86
CD44-216ENST00000525293 CDC45O75419 566 aa3.42□□□□□ -1.86
CD44-216ENST00000525293 POU3F2P20265 443 aaPredicted RBP3.42□□□□□ -1.86
CD44-216ENST00000525293 GDF5P43026 501 aa3.42□□□□□ -1.86
CD44-216ENST00000525293 SCNN1BP51168 640 aa3.42□□□□□ -1.86
CD44-216ENST00000525293 BPIFB4P59827 614 aa3.42□□□□□ -1.86
CD44-216ENST00000525293 HHEXQ03014 270 aa3.42□□□□□ -1.86
CD44-216ENST00000525293 FOXE3Q13461 319 aa3.42□□□□□ -1.86
CD44-216ENST00000525293 TCIRG1Q13488 830 aa3.42□□□□□ -1.86
CD44-216ENST00000525293 UNQ6494/PRO21346Q6UXR6 183 aa3.42□□□□□ -1.86
CD44-216ENST00000525293 RNF207Q6ZRF8 634 aa3.42□□□□□ -1.86
CD44-216ENST00000525293 BMP8AQ7Z5Y6 402 aa3.42□□□□□ -1.86
CD44-216ENST00000525293 ADGRE4PQ86SQ3 457 aa3.42□□□□□ -1.86
CD44-216ENST00000525293 JAZF1Q86VZ6 243 aa3.42□□□□□ -1.86
CD44-216ENST00000525293 PASD1Q8IV76 773 aa3.42□□□□□ -1.86
CD44-216ENST00000525293 C1orf210Q8IVY1 113 aa3.42□□□□□ -1.86
CD44-216ENST00000525293 ZZZ3Q8IYH5 903 aa3.42□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms