RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 SBK1Q52WX2 424 aa13.62□□□□□ -0.23
USP53-209ENST00000514665 CCDC93Q567U6 631 aa13.62□□□□□ -0.23
USP53-209ENST00000514665 TMEM270Q6UE05 265 aa13.62□□□□□ -0.23
USP53-209ENST00000514665 PDIK1LQ8N165 341 aa13.62□□□□□ -0.23
USP53-209ENST00000514665 DCLK2Q8N568 766 aa13.62□□□□□ -0.23
USP53-209ENST00000514665 PYROXD1Q8WU10 500 aa13.62□□□□□ -0.23
USP53-209ENST00000514665 NSMCE1Q8WV22 266 aa13.62□□□□□ -0.23
USP53-209ENST00000514665 GINM1Q9NU53 330 aa13.62□□□□□ -0.23
USP53-209ENST00000514665 FLT1P17948 1338 aa13.61□□□□□ -0.23
USP53-209ENST00000514665 EMSYQ7Z589 1322 aa13.61□□□□□ -0.23
USP53-209ENST00000514665 SART1O43290 800 aaKnown RBP13.61□□□□□ -0.23
USP53-209ENST00000514665 TOB1P50616 345 aaPredicted RBP13.61□□□□□ -0.23
USP53-209ENST00000514665 ORC2Q13416 577 aaPredicted RBP13.61□□□□□ -0.23
USP53-209ENST00000514665 ITPK1Q13572 414 aa13.61□□□□□ -0.23
USP53-209ENST00000514665 ALCAMQ13740 583 aa13.61□□□□□ -0.23
USP53-209ENST00000514665 PPP1R18Q6NYC8 613 aa13.61□□□□□ -0.23
USP53-209ENST00000514665 ERICH1Q86X53 443 aa13.61□□□□□ -0.23
USP53-209ENST00000514665 CDKL2Q92772 493 aa13.61□□□□□ -0.23
USP53-209ENST00000514665 NUF2Q9BZD4 464 aa13.61□□□□□ -0.23
USP53-209ENST00000514665 INTS2Q9H0H0 1204 aaKnown RBP13.61□□□□□ -0.23
USP53-209ENST00000514665 GOLPH3Q9H4A6 298 aa13.61□□□□□ -0.23
USP53-209ENST00000514665 NOL3O60936 208 aaKnown RBP13.61□□□□□ -0.23
USP53-209ENST00000514665 NTSR2O95665 410 aa13.61□□□□□ -0.23
USP53-209ENST00000514665 KLRK1P26718 216 aa13.61□□□□□ -0.23
USP53-209ENST00000514665 RPS6KA2Q15349 733 aa13.61□□□□□ -0.23
USP53-209ENST00000514665 CCDC117Q8IWD4 279 aaPredicted RBP13.61□□□□□ -0.23
USP53-209ENST00000514665 PDCD7Q8N8D1 485 aaKnown RBP13.61□□□□□ -0.23
USP53-209ENST00000514665 EDEM3Q9BZQ6 932 aa13.61□□□□□ -0.23
USP53-209ENST00000514665 TACC3Q9Y6A5 838 aa13.61□□□□□ -0.23
USP53-209ENST00000514665 STXBP3O00186 592 aa13.61□□□□□ -0.23
USP53-209ENST00000514665 TLR3O15455 904 aaKnown RBP13.61□□□□□ -0.23
USP53-209ENST00000514665 CPP00450 1065 aa13.61□□□□□ -0.23
USP53-209ENST00000514665 USP11P51784 963 aa13.61□□□□□ -0.23
USP53-209ENST00000514665 BEND6Q5SZJ8 279 aaPredicted RBP13.61□□□□□ -0.23
USP53-209ENST00000514665 RBM43Q6ZSC3 357 aaKnown RBP13.61□□□□□ -0.23
USP53-209ENST00000514665 C7orf25Q9BPX7 421 aa13.61□□□□□ -0.23
USP53-209ENST00000514665 WDR64B1ANS9 1081 aa13.6□□□□□ -0.23
USP53-209ENST00000514665 GOLGA8MH3BSY2 632 aa13.6□□□□□ -0.23
USP53-209ENST00000514665 ECE2O60344 883 aa13.6□□□□□ -0.23
USP53-209ENST00000514665 SLC9A1P19634 815 aa13.6□□□□□ -0.23
USP53-209ENST00000514665 QARSP47897 775 aaKnown RBP13.6□□□□□ -0.23
USP53-209ENST00000514665 ITKQ08881 620 aa13.6□□□□□ -0.23
USP53-209ENST00000514665 SPP2Q13103 211 aa13.6□□□□□ -0.23
USP53-209ENST00000514665 MKRN4PQ13434 485 aaPredicted RBP13.6□□□□□ -0.23
USP53-209ENST00000514665 LRRC14Q15048 493 aa13.6□□□□□ -0.23
USP53-209ENST00000514665 SLC18A3Q16572 532 aa13.6□□□□□ -0.23
USP53-209ENST00000514665 ZNF564Q8TBZ8 553 aaPredicted RBP13.6□□□□□ -0.23
USP53-209ENST00000514665 FAM81BQ96LP2 452 aa13.6□□□□□ -0.23
USP53-209ENST00000514665 NUB1Q9Y5A7 615 aa13.6□□□□□ -0.23
USP53-209ENST00000514665 ITIH6Q6UXX5 1313 aa13.6□□□□□ -0.23
USP53-209ENST00000514665 GBP5Q96PP8 586 aa13.6□□□□□ -0.23
USP53-209ENST00000514665 NUP85Q9BW27 656 aa13.6□□□□□ -0.23
USP53-209ENST00000514665 PITPNM3Q9BZ71 974 aa13.6□□□□□ -0.23
USP53-209ENST00000514665 ZSCAN20P17040 1043 aaPredicted RBP13.6□□□□□ -0.23
USP53-209ENST00000514665 CCNI2Q6ZMN8 369 aaPredicted RBP13.6□□□□□ -0.23
USP53-209ENST00000514665 DNAAF3Q8N9W5 541 aa13.6□□□□□ -0.23
USP53-209ENST00000514665 TBC1D16Q8TBP0 767 aa13.6□□□□□ -0.23
USP53-209ENST00000514665 HPSEQ9Y251 543 aa13.6□□□□□ -0.23
USP53-209ENST00000514665 INO80Q9ULG1 1556 aaPredicted RBP13.6□□□□□ -0.23
USP53-209ENST00000514665 GMNCA6NCL1 334 aa13.6□□□□□ -0.23
USP53-209ENST00000514665 PLEKP08567 350 aaPredicted RBP13.6□□□□□ -0.23
USP53-209ENST00000514665 SSTR3P32745 418 aaPredicted RBP13.6□□□□□ -0.23
USP53-209ENST00000514665 PPP6R3Q5H9R7 873 aaPredicted RBP13.6□□□□□ -0.23
USP53-209ENST00000514665 CIAPIN1Q6FI81 312 aa13.6□□□□□ -0.23
USP53-209ENST00000514665 TRIM59Q8IWR1 403 aa13.6□□□□□ -0.23
USP53-209ENST00000514665 HACE1Q8IYU2 909 aa13.6□□□□□ -0.23
USP53-209ENST00000514665 TTLL6Q8N841 843 aa13.6□□□□□ -0.23
USP53-209ENST00000514665 RFFLQ8WZ73 363 aa13.6□□□□□ -0.23
USP53-209ENST00000514665 DCPSQ96C86 337 aaKnown RBP13.6□□□□□ -0.23
USP53-209ENST00000514665 RNPC3Q96LT9 517 aaKnown RBP13.6□□□□□ -0.23
USP53-209ENST00000514665 ACTR5Q9H9F9 607 aaPredicted RBP13.6□□□□□ -0.23
USP53-209ENST00000514665 RBM12Q9NTZ6 932 aaKnown RBP13.6□□□□□ -0.23
USP53-209ENST00000514665 CPSF2Q9P2I0 782 aaKnown RBP13.6□□□□□ -0.23
USP53-209ENST00000514665 G3BP2Q9UN86 482 aaKnown RBP13.6□□□□□ -0.23
USP53-209ENST00000514665 RASA4BC9J798 803 aa13.59□□□□□ -0.23
USP53-209ENST00000514665 RASA4O43374 803 aa13.59□□□□□ -0.23
USP53-209ENST00000514665 OPHN1O60890 802 aa13.59□□□□□ -0.23
USP53-209ENST00000514665 KRT14P02533 472 aa13.59□□□□□ -0.23
USP53-209ENST00000514665 SERPINB6P35237 376 aa13.59□□□□□ -0.23
USP53-209ENST00000514665 PMS2P54278 862 aa13.59□□□□□ -0.23
USP53-209ENST00000514665 LMBRD2Q68DH5 695 aaPredicted RBP13.59□□□□□ -0.23
USP53-209ENST00000514665 CENPUQ71F23 418 aa13.59□□□□□ -0.23
USP53-209ENST00000514665 HAUS6Q7Z4H7 955 aa13.59□□□□□ -0.23
USP53-209ENST00000514665 C1orf54Q8WWF1 131 aa13.59□□□□□ -0.23
USP53-209ENST00000514665 ATP6V1G3Q96LB4 118 aa13.59□□□□□ -0.23
USP53-209ENST00000514665 HEXIM2Q96MH2 286 aaKnown RBP13.59□□□□□ -0.23
USP53-209ENST00000514665 MYCBPQ99417 103 aaPredicted RBP13.59□□□□□ -0.23
USP53-209ENST00000514665 L2HGDHQ9H9P8 463 aa13.59□□□□□ -0.23
USP53-209ENST00000514665 EHD2Q9NZN4 543 aa13.59□□□□□ -0.23
USP53-209ENST00000514665 PIK3C2BO00750 1634 aa13.59□□□□□ -0.23
USP53-209ENST00000514665 CLDN3O15551 220 aa13.59□□□□□ -0.23
USP53-209ENST00000514665 P4HBP07237 508 aaKnown RBP13.59□□□□□ -0.23
USP53-209ENST00000514665 PDHBP11177 359 aa13.59□□□□□ -0.23
USP53-209ENST00000514665 UCHL3P15374 230 aa13.59□□□□□ -0.23
USP53-209ENST00000514665 ZNF18P17022 549 aa13.59□□□□□ -0.23
USP53-209ENST00000514665 PSMA2P25787 234 aa13.59□□□□□ -0.23
USP53-209ENST00000514665 CYP2C19P33261 490 aa13.59□□□□□ -0.23
USP53-209ENST00000514665 PPP2R2AP63151 447 aa13.59□□□□□ -0.23
USP53-209ENST00000514665 CEP55Q53EZ4 464 aa13.59□□□□□ -0.23
USP53-209ENST00000514665 PDZD4Q76G19 769 aaPredicted RBP13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms