RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 KSR1Q8IVT5 923 aa13.21□□□□□ -0.29
CUX1-210ENST00000497815 GRAMD1CQ8IYS0 662 aa13.21□□□□□ -0.29
CUX1-210ENST00000497815 LINC01465Q8N7H1 131 aa13.21□□□□□ -0.29
CUX1-210ENST00000497815 MCPH1Q8NEM0 835 aa13.21□□□□□ -0.29
CUX1-210ENST00000497815 TCP11Q8WWU5 503 aa13.21□□□□□ -0.29
CUX1-210ENST00000497815 TRIM43Q96BQ3 446 aaPredicted RBP13.21□□□□□ -0.29
CUX1-210ENST00000497815 SCLT1Q96NL6 688 aa13.21□□□□□ -0.29
CUX1-210ENST00000497815 NOC4LQ9BVI4 516 aaKnown RBP13.21□□□□□ -0.29
CUX1-210ENST00000497815 POLR3FQ9H1D9 316 aaPredicted RBP13.21□□□□□ -0.29
CUX1-210ENST00000497815 CUEDC2Q9H467 287 aa13.21□□□□□ -0.29
CUX1-210ENST00000497815 LMBRD1Q9NUN5 540 aa13.21□□□□□ -0.29
CUX1-210ENST00000497815 PRKAG2Q9UGJ0 569 aa13.21□□□□□ -0.29
CUX1-210ENST00000497815 ZMYND8Q9ULU4 1186 aaPredicted RBP13.21□□□□□ -0.29
CUX1-210ENST00000497815 GINS2Q9Y248 185 aa13.21□□□□□ -0.29
CUX1-210ENST00000497815 MYMKA6NI61 221 aa13.2□□□□□ -0.3
CUX1-210ENST00000497815 M0QZ92 97 aa13.2□□□□□ -0.3
CUX1-210ENST00000497815 GAS2O43903 313 aaKnown RBP13.2□□□□□ -0.3
CUX1-210ENST00000497815 NR1I2O75469 434 aa13.2□□□□□ -0.3
CUX1-210ENST00000497815 SLFN14P0C7P3 912 aa13.2□□□□□ -0.3
CUX1-210ENST00000497815 RAG1P15918 1043 aa13.2□□□□□ -0.3
CUX1-210ENST00000497815 CCL23P55773 120 aa13.2□□□□□ -0.3
CUX1-210ENST00000497815 MRPS6P82932 125 aaKnown RBP13.2□□□□□ -0.3
CUX1-210ENST00000497815 FAM160A1Q05DH4 1040 aa13.2□□□□□ -0.3
CUX1-210ENST00000497815 KIZQ2M2Z5 673 aa13.2□□□□□ -0.3
CUX1-210ENST00000497815 IER5Q5VY09 327 aa13.2□□□□□ -0.3
CUX1-210ENST00000497815 FMR1NBQ8N0W7 255 aaPredicted RBP13.2□□□□□ -0.3
CUX1-210ENST00000497815 CNNM3Q8NE01 707 aa13.2□□□□□ -0.3
CUX1-210ENST00000497815 CAGE1Q8TC20 777 aa13.2□□□□□ -0.3
CUX1-210ENST00000497815 PRPF31Q8WWY3 499 aaKnown RBP13.2□□□□□ -0.3
CUX1-210ENST00000497815 PSPC1Q8WXF1 523 aaKnown RBP13.2□□□□□ -0.3
CUX1-210ENST00000497815 NLRP4Q96MN2 994 aa13.2□□□□□ -0.3
CUX1-210ENST00000497815 REEP2Q9BRK0 252 aa13.2□□□□□ -0.3
CUX1-210ENST00000497815 ZHX3Q9H4I2 956 aa13.2□□□□□ -0.3
CUX1-210ENST00000497815 ALPK3Q96L96 1907 aa13.19□□□□□ -0.3
CUX1-210ENST00000497815 SFI1A8K8P3 1242 aa13.19□□□□□ -0.3
CUX1-210ENST00000497815 RSPH10B2B2RC85 870 aa13.19□□□□□ -0.3
CUX1-210ENST00000497815 KIAA0355O15063 1070 aa13.19□□□□□ -0.3
CUX1-210ENST00000497815 RSPH10BP0C881 870 aa13.19□□□□□ -0.3
CUX1-210ENST00000497815 SRGAP2CP0DJJ0 459 aa13.19□□□□□ -0.3
CUX1-210ENST00000497815 SELPP16109 830 aa13.19□□□□□ -0.3
CUX1-210ENST00000497815 ITGB8P26012 769 aa13.19□□□□□ -0.3
CUX1-210ENST00000497815 CASP1P29466 404 aa13.19□□□□□ -0.3
CUX1-210ENST00000497815 ARL2P36404 184 aa13.19□□□□□ -0.3
CUX1-210ENST00000497815 NLRP11P59045 1033 aaKnown RBP13.19□□□□□ -0.3
CUX1-210ENST00000497815 LAMTOR4Q0VGL1 99 aa13.19□□□□□ -0.3
CUX1-210ENST00000497815 SNW1Q13573 536 aaKnown RBP13.19□□□□□ -0.3
CUX1-210ENST00000497815 KRBA2Q6ZNG9 492 aa13.19□□□□□ -0.3
CUX1-210ENST00000497815 LRRC8DQ7L1W4 858 aa13.19□□□□□ -0.3
CUX1-210ENST00000497815 NME8Q8N427 588 aa13.19□□□□□ -0.3
CUX1-210ENST00000497815 ENGASEQ8NFI3 743 aa13.19□□□□□ -0.3
CUX1-210ENST00000497815 ASAP3Q8TDY4 903 aa13.19□□□□□ -0.3
CUX1-210ENST00000497815 NLRP7Q8WX94 980 aa13.19□□□□□ -0.3
CUX1-210ENST00000497815 DDX12PQ92771 950 aa13.19□□□□□ -0.3
CUX1-210ENST00000497815 PAGE5Q96GU1 130 aa13.19□□□□□ -0.3
CUX1-210ENST00000497815 SCLYQ96I15 445 aa13.19□□□□□ -0.3
CUX1-210ENST00000497815 BLZF1Q9H2G9 400 aa13.19□□□□□ -0.3
CUX1-210ENST00000497815 TNMDQ9H2S6 317 aa13.19□□□□□ -0.3
CUX1-210ENST00000497815 KBTBD4Q9NVX7 518 aa13.19□□□□□ -0.3
CUX1-210ENST00000497815 KCND2Q9NZV8 630 aa13.19□□□□□ -0.3
CUX1-210ENST00000497815 USP25Q9UHP3 1055 aa13.19□□□□□ -0.3
CUX1-210ENST00000497815 COL4A3BPQ9Y5P4 624 aa13.19□□□□□ -0.3
CUX1-210ENST00000497815 CDY2AQ9Y6F7 541 aa13.19□□□□□ -0.3
CUX1-210ENST00000497815 PITPNM1O00562 1244 aa13.18□□□□□ -0.3
CUX1-210ENST00000497815 KINO60870 393 aaKnown RBP13.18□□□□□ -0.3
CUX1-210ENST00000497815 TBCAO75347 108 aaKnown RBP13.18□□□□□ -0.3
CUX1-210ENST00000497815 FAM13AO94988 1023 aa13.18□□□□□ -0.3
CUX1-210ENST00000497815 TIMP1P01033 207 aa13.18□□□□□ -0.3
CUX1-210ENST00000497815 CHRNA1P02708 482 aa13.18□□□□□ -0.3
CUX1-210ENST00000497815 IDEP14735 1019 aa13.18□□□□□ -0.3
CUX1-210ENST00000497815 GLRA2P23416 452 aa13.18□□□□□ -0.3
CUX1-210ENST00000497815 GUCY2CP25092 1073 aa13.18□□□□□ -0.3
CUX1-210ENST00000497815 MCM4P33991 863 aa13.18□□□□□ -0.3
CUX1-210ENST00000497815 GPC3P51654 580 aa13.18□□□□□ -0.3
CUX1-210ENST00000497815 AMPD3Q01432 767 aa13.18□□□□□ -0.3
CUX1-210ENST00000497815 MAPK7Q13164 816 aa13.18□□□□□ -0.3
CUX1-210ENST00000497815 GIT2Q14161 759 aa13.18□□□□□ -0.3
CUX1-210ENST00000497815 RPAINQ86UA6 219 aa13.18□□□□□ -0.3
CUX1-210ENST00000497815 DAW1Q8N136 415 aa13.18□□□□□ -0.3
CUX1-210ENST00000497815 BSNDQ8WZ55 320 aa13.18□□□□□ -0.3
CUX1-210ENST00000497815 KIFAP3Q92845 792 aa13.18□□□□□ -0.3
CUX1-210ENST00000497815 DRC1Q96MC2 740 aa13.18□□□□□ -0.3
CUX1-210ENST00000497815 OSMRQ99650 979 aa13.18□□□□□ -0.3
CUX1-210ENST00000497815 TIPINQ9BVW5 301 aa13.18□□□□□ -0.3
CUX1-210ENST00000497815 CELF4Q9BZC1 486 aaKnown RBP13.18□□□□□ -0.3
CUX1-210ENST00000497815 LRRC27Q9C0I9 530 aa13.18□□□□□ -0.3
CUX1-210ENST00000497815 WNT8AQ9H1J5 351 aa13.18□□□□□ -0.3
CUX1-210ENST00000497815 MAGEF1Q9HAY2 307 aa13.18□□□□□ -0.3
CUX1-210ENST00000497815 CDHR5Q9HBB8 845 aa13.18□□□□□ -0.3
CUX1-210ENST00000497815 DACT1Q9NYF0 836 aa13.18□□□□□ -0.3
CUX1-210ENST00000497815 TRPV2Q9Y5S1 764 aa13.18□□□□□ -0.3
CUX1-210ENST00000497815 NR2E3Q9Y5X4 410 aa13.18□□□□□ -0.3
CUX1-210ENST00000497815 DNAH12Q6ZR08 3092 aa13.17□□□□□ -0.3
CUX1-210ENST00000497815 A0A087WZ62 844 aa13.17□□□□□ -0.3
CUX1-210ENST00000497815 LRRIQ4A6NIV6 560 aa13.17□□□□□ -0.3
CUX1-210ENST00000497815 CCDC169A6NNP5 214 aa13.17□□□□□ -0.3
CUX1-210ENST00000497815 CAND2O75155 1236 aa13.17□□□□□ -0.3
CUX1-210ENST00000497815 GPR32O75388 356 aa13.17□□□□□ -0.3
CUX1-210ENST00000497815 RPLP2P05387 115 aaKnown RBP13.17□□□□□ -0.3
CUX1-210ENST00000497815 IQCF3P0C7M6 154 aa13.17□□□□□ -0.3
CUX1-210ENST00000497815 RGS19P49795 217 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms