RNA–Protein interactions for RNA: ENST00000481999.1

CHD3-211, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 2,515 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-211ENST00000481999 SH3D19Q5HYK7 790 aa15.82■□□□□ 0.12
CHD3-211ENST00000481999 SWSAP1Q6NVH7 229 aa15.82■□□□□ 0.12
CHD3-211ENST00000481999 LBX2Q6XYB7 198 aa15.82■□□□□ 0.12
CHD3-211ENST00000481999 NEK11Q8NG66 645 aa15.82■□□□□ 0.12
CHD3-211ENST00000481999 EIF3CQ99613 913 aaKnown RBP15.82■□□□□ 0.12
CHD3-211ENST00000481999 RHOXF2Q9BQY4 288 aa15.82■□□□□ 0.12
CHD3-211ENST00000481999 MAP3K20Q9NYL2 800 aaKnown RBP15.82■□□□□ 0.12
CHD3-211ENST00000481999 ZKSCAN7Q9P0L1 754 aaPredicted RBP15.82■□□□□ 0.12
CHD3-211ENST00000481999 USP20Q9Y2K6 914 aa15.82■□□□□ 0.12
CHD3-211ENST00000481999 WDR81Q562E7 1941 aa15.82■□□□□ 0.12
CHD3-211ENST00000481999 WDR64B1ANS9 1081 aa15.82■□□□□ 0.12
CHD3-211ENST00000481999 SLC16A4O15374 487 aa15.82■□□□□ 0.12
CHD3-211ENST00000481999 GAP43P17677 238 aa15.82■□□□□ 0.12
CHD3-211ENST00000481999 GUCY2CP25092 1073 aa15.82■□□□□ 0.12
CHD3-211ENST00000481999 HOXA7P31268 230 aaPredicted RBP15.82■□□□□ 0.12
CHD3-211ENST00000481999 EIF4A3P38919 411 aaKnown RBP15.82■□□□□ 0.12
CHD3-211ENST00000481999 OAZ1P54368 228 aa15.82■□□□□ 0.12
CHD3-211ENST00000481999 MARSP56192 900 aaKnown RBP15.82■□□□□ 0.12
CHD3-211ENST00000481999 PEX3P56589 373 aa15.82■□□□□ 0.12
CHD3-211ENST00000481999 Q3C1V9 767 aa15.82■□□□□ 0.12
CHD3-211ENST00000481999 CYFIP1Q7L576 1253 aa15.82■□□□□ 0.12
CHD3-211ENST00000481999 SLC35C1Q96A29 364 aa15.82■□□□□ 0.12
CHD3-211ENST00000481999 JAKMIP2Q96AA8 810 aa15.82■□□□□ 0.12
CHD3-211ENST00000481999 CCDC43Q96MW1 224 aaKnown RBP15.82■□□□□ 0.12
CHD3-211ENST00000481999 CALUO43852 315 aaPredicted RBP15.81■□□□□ 0.12
CHD3-211ENST00000481999 FDX1P10109 184 aa15.81■□□□□ 0.12
CHD3-211ENST00000481999 XRCC5P13010 732 aaKnown RBP15.81■□□□□ 0.12
CHD3-211ENST00000481999 GFPT1Q06210 699 aaPredicted RBP15.81■□□□□ 0.12
CHD3-211ENST00000481999 FAM102BQ5T8I3 360 aa15.81■□□□□ 0.12
CHD3-211ENST00000481999 PPP4R3CPQ6ZMV5 832 aa15.81■□□□□ 0.12
CHD3-211ENST00000481999 ANKRD13CQ8N6S4 541 aa15.81■□□□□ 0.12
CHD3-211ENST00000481999 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.81■□□□□ 0.12
CHD3-211ENST00000481999 AGPAT3Q9NRZ7 376 aa15.81■□□□□ 0.12
CHD3-211ENST00000481999 L1RE1Q9UN81 338 aa15.81■□□□□ 0.12
CHD3-211ENST00000481999 MACROD2A1Z1Q3 448 aa15.81■□□□□ 0.12
CHD3-211ENST00000481999 ATP2A1O14983 1001 aa15.81■□□□□ 0.12
CHD3-211ENST00000481999 EIF3JO75822 258 aaKnown RBP15.81■□□□□ 0.12
CHD3-211ENST00000481999 PAPD7Q5XG87 772 aaKnown RBP15.81■□□□□ 0.12
CHD3-211ENST00000481999 BSNDQ8WZ55 320 aa15.81■□□□□ 0.12
CHD3-211ENST00000481999 CBWD1Q9BRT8 395 aa15.81■□□□□ 0.12
CHD3-211ENST00000481999 ASCC2Q9H1I8 757 aaPredicted RBP15.81■□□□□ 0.12
CHD3-211ENST00000481999 ABCB6Q9NP58 842 aa15.81■□□□□ 0.12
CHD3-211ENST00000481999 HDAC6Q9UBN7 1215 aa15.81■□□□□ 0.12
CHD3-211ENST00000481999 ODF2LQ9ULJ1 636 aa15.81■□□□□ 0.12
CHD3-211ENST00000481999 SAR1BQ9Y6B6 198 aa15.81■□□□□ 0.12
CHD3-211ENST00000481999 ERICH4A6NGS2 130 aa15.8■□□□□ 0.12
CHD3-211ENST00000481999 IREB2P48200 963 aaKnown RBP15.8■□□□□ 0.12
CHD3-211ENST00000481999 PSMC5P62195 406 aa15.8■□□□□ 0.12
CHD3-211ENST00000481999 DLG4P78352 724 aa15.8■□□□□ 0.12
CHD3-211ENST00000481999 HGSNATQ68CP4 663 aa15.8■□□□□ 0.12
CHD3-211ENST00000481999 WDR93Q6P2C0 686 aa15.8■□□□□ 0.12
CHD3-211ENST00000481999 FOXR2Q6PJQ5 311 aa15.8■□□□□ 0.12
CHD3-211ENST00000481999 SYCP3Q8IZU3 236 aa15.8■□□□□ 0.12
CHD3-211ENST00000481999 FAM133AQ8N9E0 248 aa15.8■□□□□ 0.12
CHD3-211ENST00000481999 NOA1Q8NC60 698 aaKnown RBP15.8■□□□□ 0.12
CHD3-211ENST00000481999 RBM46Q8TBY0 533 aaKnown RBP15.8■□□□□ 0.12
CHD3-211ENST00000481999 OPTNQ96CV9 577 aa15.8■□□□□ 0.12
CHD3-211ENST00000481999 FAM84AQ96KN4 292 aa15.8■□□□□ 0.12
CHD3-211ENST00000481999 CCDC42Q96M95 316 aa15.8■□□□□ 0.12
CHD3-211ENST00000481999 MOV10L1Q9BXT6 1211 aaKnown RBP15.8■□□□□ 0.12
CHD3-211ENST00000481999 JPH1Q9HDC5 661 aaPredicted RBP15.8■□□□□ 0.12
CHD3-211ENST00000481999 ZCCHC17Q9NP64 241 aaKnown RBP15.8■□□□□ 0.12
CHD3-211ENST00000481999 GLTPD2A6NH11 291 aa15.79■□□□□ 0.12
CHD3-211ENST00000481999 PPP1R37O75864 691 aa15.79■□□□□ 0.12
CHD3-211ENST00000481999 GNA14O95837 355 aa15.79■□□□□ 0.12
CHD3-211ENST00000481999 GJA5P36382 358 aa15.79■□□□□ 0.12
CHD3-211ENST00000481999 VSNL1P62760 191 aa15.79■□□□□ 0.12
CHD3-211ENST00000481999 IRX3P78415 501 aaPredicted RBP15.79■□□□□ 0.12
CHD3-211ENST00000481999 RAPGEF1Q13905 1077 aa15.79■□□□□ 0.12
CHD3-211ENST00000481999 TDRD12Q587J7 1177 aaKnown RBP15.79■□□□□ 0.12
CHD3-211ENST00000481999 TMEM63BQ5T3F8 832 aa15.79■□□□□ 0.12
CHD3-211ENST00000481999 DPY19L2Q6NUT2 758 aa15.79■□□□□ 0.12
CHD3-211ENST00000481999 DPY19L2P1Q6NXN4 242 aa15.79■□□□□ 0.12
CHD3-211ENST00000481999 PDXDC1Q6P996 788 aa15.79■□□□□ 0.12
CHD3-211ENST00000481999 BORCS6Q96GS4 357 aa15.79■□□□□ 0.12
CHD3-211ENST00000481999 RPGRIP1Q96KN7 1286 aa15.79■□□□□ 0.12
CHD3-211ENST00000481999 SPATC1LQ9H0A9 340 aa15.79■□□□□ 0.12
CHD3-211ENST00000481999 PCDHA10Q9Y5I2 948 aa15.79■□□□□ 0.12
CHD3-211ENST00000481999 EIF3DO15371 548 aaKnown RBP eCLIP15.79■□□□□ 0.12
CHD3-211ENST00000481999 ECM2O94769 699 aaPredicted RBP15.79■□□□□ 0.12
CHD3-211ENST00000481999 KIF11P52732 1056 aa15.79■□□□□ 0.12
CHD3-211ENST00000481999 ACTR2P61160 394 aa15.79■□□□□ 0.12
CHD3-211ENST00000481999 KRT76Q01546 638 aa15.79■□□□□ 0.12
CHD3-211ENST00000481999 CBWD6Q4V339 395 aa15.79■□□□□ 0.12
CHD3-211ENST00000481999 CBWD3Q5JTY5 395 aa15.79■□□□□ 0.12
CHD3-211ENST00000481999 CBWD5Q5RIA9 395 aa15.79■□□□□ 0.12
CHD3-211ENST00000481999 C4orf19Q8IY42 314 aa15.79■□□□□ 0.12
CHD3-211ENST00000481999 ELMO3Q96BJ8 720 aa15.79■□□□□ 0.12
CHD3-211ENST00000481999 GPRASP2Q96D09 838 aa15.79■□□□□ 0.12
CHD3-211ENST00000481999 TSGA10Q9BZW7 698 aa15.79■□□□□ 0.12
CHD3-211ENST00000481999 A0A0G2JLL6 359 aaPredicted RBP15.78■□□□□ 0.12
CHD3-211ENST00000481999 ANO9A1A5B4 782 aa15.78■□□□□ 0.12
CHD3-211ENST00000481999 AFPP02771 609 aaKnown RBP15.78■□□□□ 0.12
CHD3-211ENST00000481999 ATP1A1P05023 1023 aaKnown RBP15.78■□□□□ 0.12
CHD3-211ENST00000481999 EPB41P11171 864 aaKnown RBP15.78■□□□□ 0.12
CHD3-211ENST00000481999 PON1P27169 355 aa15.78■□□□□ 0.12
CHD3-211ENST00000481999 HNRNPH3P31942 346 aaKnown RBP15.78■□□□□ 0.12
CHD3-211ENST00000481999 CKAP4Q07065 602 aaKnown RBP15.78■□□□□ 0.12
CHD3-211ENST00000481999 WDR78Q5VTH9 848 aa15.78■□□□□ 0.12
CHD3-211ENST00000481999 MAP1SQ66K74 1059 aaPredicted RBP15.78■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms