RNA–Protein interactions for RNA: ENST00000481502.5

SYNE1-225, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 585 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-225ENST00000481502 MTERF2Q49AM1 385 aa9.14□□□□□ -0.95
SYNE1-225ENST00000481502 IFNLR1Q8IU57 520 aaPredicted RBP9.14□□□□□ -0.95
SYNE1-225ENST00000481502 LINC01465Q8N7H1 131 aa9.14□□□□□ -0.95
SYNE1-225ENST00000481502 HVCN1Q96D96 273 aa9.14□□□□□ -0.95
SYNE1-225ENST00000481502 IFT74Q96LB3 600 aa9.14□□□□□ -0.95
SYNE1-225ENST00000481502 REEP2Q9BRK0 252 aa9.14□□□□□ -0.95
SYNE1-225ENST00000481502 TMEM106CQ9BVX2 250 aa9.14□□□□□ -0.95
SYNE1-225ENST00000481502 EXOC1Q9NV70 894 aa9.14□□□□□ -0.95
SYNE1-225ENST00000481502 CGNQ9P2M7 1197 aaKnown RBP9.14□□□□□ -0.95
SYNE1-225ENST00000481502 GTF2IRD1Q9UHL9 959 aa9.14□□□□□ -0.95
SYNE1-225ENST00000481502 PCDHB13Q9Y5F0 798 aa9.14□□□□□ -0.95
SYNE1-225ENST00000481502 A0A0U1RQG5 324 aaPredicted RBP9.13□□□□□ -0.95
SYNE1-225ENST00000481502 FAM13AO94988 1023 aa9.13□□□□□ -0.95
SYNE1-225ENST00000481502 C22orf31O95567 290 aa9.13□□□□□ -0.95
SYNE1-225ENST00000481502 ZNF286BP0CG31 522 aa9.13□□□□□ -0.95
SYNE1-225ENST00000481502 SMIM10L2AP0DMW4 78 aa9.13□□□□□ -0.95
SYNE1-225ENST00000481502 SMIM10L2BP0DMW5 78 aa9.13□□□□□ -0.95
SYNE1-225ENST00000481502 KLRC1P26715 233 aa9.13□□□□□ -0.95
SYNE1-225ENST00000481502 EFNA5P52803 228 aa9.13□□□□□ -0.95
SYNE1-225ENST00000481502 NLRP12P59046 1061 aa9.13□□□□□ -0.95
SYNE1-225ENST00000481502 MAPK7Q13164 816 aa9.13□□□□□ -0.95
SYNE1-225ENST00000481502 DMP1Q13316 513 aaPredicted RBP9.13□□□□□ -0.95
SYNE1-225ENST00000481502 TFDP1Q14186 410 aa9.13□□□□□ -0.95
SYNE1-225ENST00000481502 STX1AQ16623 288 aa9.13□□□□□ -0.95
SYNE1-225ENST00000481502 KMT5BQ4FZB7 885 aa9.13□□□□□ -0.95
SYNE1-225ENST00000481502 HERC4Q5GLZ8 1057 aaPredicted RBP9.13□□□□□ -0.95
SYNE1-225ENST00000481502 MARCH8Q5T0T0 291 aa9.13□□□□□ -0.95
SYNE1-225ENST00000481502 MTHFD1LQ6UB35 978 aa9.13□□□□□ -0.95
SYNE1-225ENST00000481502 LRSAM1Q6UWE0 723 aa9.13□□□□□ -0.95
SYNE1-225ENST00000481502 CXCL17Q6UXB2 119 aa9.13□□□□□ -0.95
SYNE1-225ENST00000481502 DYMQ7RTS9 669 aa9.13□□□□□ -0.95
SYNE1-225ENST00000481502 ZNF720Q7Z2F6 126 aa9.13□□□□□ -0.95
SYNE1-225ENST00000481502 RSPH3Q86UC2 560 aa9.13□□□□□ -0.95
SYNE1-225ENST00000481502 ZNF410Q86VK4 478 aa9.13□□□□□ -0.95
SYNE1-225ENST00000481502 TRIM50Q86XT4 487 aa9.13□□□□□ -0.95
SYNE1-225ENST00000481502 GUF1Q8N442 669 aaKnown RBP9.13□□□□□ -0.95
SYNE1-225ENST00000481502 U2AF1L4Q8WU68 220 aaKnown RBP9.13□□□□□ -0.95
SYNE1-225ENST00000481502 PSPC1Q8WXF1 523 aaKnown RBP9.13□□□□□ -0.95
SYNE1-225ENST00000481502 DHTKD1Q96HY7 919 aaPredicted RBP9.13□□□□□ -0.95
SYNE1-225ENST00000481502 TOX2Q96NM4 488 aa9.13□□□□□ -0.95
SYNE1-225ENST00000481502 DEFB118Q96PH6 123 aa9.13□□□□□ -0.95
SYNE1-225ENST00000481502 MAP7D2Q96T17 732 aa9.13□□□□□ -0.95
SYNE1-225ENST00000481502 BPIFA3Q9BQP9 254 aa9.13□□□□□ -0.95
SYNE1-225ENST00000481502 FUCA2Q9BTY2 467 aa9.13□□□□□ -0.95
SYNE1-225ENST00000481502 RUSC1Q9BVN2 902 aa9.13□□□□□ -0.95
SYNE1-225ENST00000481502 INO80BQ9C086 356 aaPredicted RBP9.13□□□□□ -0.95
SYNE1-225ENST00000481502 C2orf40Q9H1Z8 148 aa9.13□□□□□ -0.95
SYNE1-225ENST00000481502 TMEM134Q9H6X4 195 aa9.13□□□□□ -0.95
SYNE1-225ENST00000481502 TMEM206Q9H813 350 aa9.13□□□□□ -0.95
SYNE1-225ENST00000481502 XPNPEP1Q9NQW7 623 aa9.13□□□□□ -0.95
SYNE1-225ENST00000481502 TELO2Q9Y4R8 837 aa9.13□□□□□ -0.95
SYNE1-225ENST00000481502 SQORQ9Y6N5 450 aa9.13□□□□□ -0.95
SYNE1-225ENST00000481502 DOCK5Q9H7D0 1870 aa9.13□□□□□ -0.95
SYNE1-225ENST00000481502 MYADML2A6NDP7 307 aa9.12□□□□□ -0.95
SYNE1-225ENST00000481502 ARVCFO00192 962 aa9.12□□□□□ -0.95
SYNE1-225ENST00000481502 SORBS3O60504 671 aa9.12□□□□□ -0.95
SYNE1-225ENST00000481502 USO1O60763 962 aaKnown RBP9.12□□□□□ -0.95
SYNE1-225ENST00000481502 HIP1RO75146 1068 aa9.12□□□□□ -0.95
SYNE1-225ENST00000481502 PARNO95453 639 aaKnown RBP9.12□□□□□ -0.95
SYNE1-225ENST00000481502 IDEP14735 1019 aa9.12□□□□□ -0.95
SYNE1-225ENST00000481502 CDK7P50613 346 aa9.12□□□□□ -0.95
SYNE1-225ENST00000481502 NCKAP1LP55160 1127 aa9.12□□□□□ -0.95
SYNE1-225ENST00000481502 GTF2BQ00403 316 aa9.12□□□□□ -0.95
SYNE1-225ENST00000481502 COASYQ13057 564 aa9.12□□□□□ -0.95
SYNE1-225ENST00000481502 ITGA7Q13683 1181 aa9.12□□□□□ -0.95
SYNE1-225ENST00000481502 MYBPC2Q14324 1141 aa9.12□□□□□ -0.95
SYNE1-225ENST00000481502 DHX8Q14562 1220 aaKnown RBP9.12□□□□□ -0.95
SYNE1-225ENST00000481502 MTFR1Q15390 333 aa9.12□□□□□ -0.95
SYNE1-225ENST00000481502 BMT2Q1RMZ1 405 aa9.12□□□□□ -0.95
SYNE1-225ENST00000481502 NBPF20Q3BBV1 942 aa9.12□□□□□ -0.95
SYNE1-225ENST00000481502 TPRNQ4KMQ1 711 aa9.12□□□□□ -0.95
SYNE1-225ENST00000481502 FAM26FQ5R3K3 315 aa9.12□□□□□ -0.95
SYNE1-225ENST00000481502 ODR4Q5SWX8 454 aa9.12□□□□□ -0.95
SYNE1-225ENST00000481502 PLA2G4FQ68DD2 849 aa9.12□□□□□ -0.95
SYNE1-225ENST00000481502 EFCAB12Q6NXP0 572 aa9.12□□□□□ -0.95
SYNE1-225ENST00000481502 FAM178BQ8IXR5 827 aa9.12□□□□□ -0.95
SYNE1-225ENST00000481502 DAW1Q8N136 415 aa9.12□□□□□ -0.95
SYNE1-225ENST00000481502 MYCT1Q8N699 235 aa9.12□□□□□ -0.95
SYNE1-225ENST00000481502 ZNF507Q8TCN5 953 aa9.12□□□□□ -0.95
SYNE1-225ENST00000481502 LMBR1Q8WVP7 490 aa9.12□□□□□ -0.95
SYNE1-225ENST00000481502 LENG1Q96BZ8 264 aaPredicted RBP9.12□□□□□ -0.95
SYNE1-225ENST00000481502 PRIMPOLQ96LW4 560 aa9.12□□□□□ -0.95
SYNE1-225ENST00000481502 STRA6Q9BX79 667 aa9.12□□□□□ -0.95
SYNE1-225ENST00000481502 BLZF1Q9H2G9 400 aa9.12□□□□□ -0.95
SYNE1-225ENST00000481502 STARD7Q9NQZ5 370 aa9.12□□□□□ -0.95
SYNE1-225ENST00000481502 HDAC6Q9UBN7 1215 aa9.12□□□□□ -0.95
SYNE1-225ENST00000481502 MAN1B1Q9UKM7 699 aa9.12□□□□□ -0.95
SYNE1-225ENST00000481502 EXOC7Q9UPT5 735 aa9.12□□□□□ -0.95
SYNE1-225ENST00000481502 KAT6AQ92794 2004 aa9.11□□□□□ -0.95
SYNE1-225ENST00000481502 A0A1W2PQ45 241 aaPredicted RBP9.11□□□□□ -0.95
SYNE1-225ENST00000481502 A0A1W2PQY0 241 aa9.11□□□□□ -0.95
SYNE1-225ENST00000481502 BICDL2A1A5D9 508 aa9.11□□□□□ -0.95
SYNE1-225ENST00000481502 SYCE3A1L190 88 aa9.11□□□□□ -0.95
SYNE1-225ENST00000481502 SPDYE4A6NLX3 237 aa9.11□□□□□ -0.95
SYNE1-225ENST00000481502 PSMA7O14818 248 aa9.11□□□□□ -0.95
SYNE1-225ENST00000481502 KIAA0391O15091 583 aaKnown RBP9.11□□□□□ -0.95
SYNE1-225ENST00000481502 TFRCP02786 760 aaKnown RBP9.11□□□□□ -0.95
SYNE1-225ENST00000481502 PRR29P0C7W0 189 aa9.11□□□□□ -0.95
SYNE1-225ENST00000481502 COL6A1P12109 1028 aa9.11□□□□□ -0.95
SYNE1-225ENST00000481502 MARK3P27448 753 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms