RNA–Protein interactions for RNA: ENST00000468211.6

PTCH1-210, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 1,254 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-210ENST00000468211 RDM1Q8NG50 284 aa27.58■■■□□ 2.01
PTCH1-210ENST00000468211 ELAC1Q9H777 363 aaKnown RBP27.58■■■□□ 2.01
PTCH1-210ENST00000468211 PCDHB12Q9Y5F1 795 aa27.58■■■□□ 2.01
PTCH1-210ENST00000468211 C19orf67A6NJJ6 358 aa27.57■■■□□ 2
PTCH1-210ENST00000468211 CSDE1O75534 798 aaKnown RBP27.57■■■□□ 2
PTCH1-210ENST00000468211 DARSP14868 501 aaKnown RBP27.57■■■□□ 2
PTCH1-210ENST00000468211 NRIP1P48552 1158 aa27.57■■■□□ 2
PTCH1-210ENST00000468211 TBC1D8BQ0IIM8 1120 aa27.57■■■□□ 2
PTCH1-210ENST00000468211 NONOQ15233 471 aaKnown RBP eCLIP27.57■■■□□ 2
PTCH1-210ENST00000468211 SMAD2Q15796 467 aaKnown RBP27.57■■■□□ 2
PTCH1-210ENST00000468211 MTERF2Q49AM1 385 aa27.57■■■□□ 2
PTCH1-210ENST00000468211 GALNT17Q6IS24 598 aa27.57■■■□□ 2
PTCH1-210ENST00000468211 CPLX2Q6PUV4 134 aaKnown RBP27.57■■■□□ 2
PTCH1-210ENST00000468211 MOXD1Q6UVY6 613 aa27.57■■■□□ 2
PTCH1-210ENST00000468211 LRRC55Q6ZSA7 311 aa27.57■■■□□ 2
PTCH1-210ENST00000468211 MSLNLQ96KJ4 702 aa27.57■■■□□ 2
PTCH1-210ENST00000468211 NIFKQ9BYG3 293 aaKnown RBP27.57■■■□□ 2
PTCH1-210ENST00000468211 CLEC1BQ9P126 229 aa27.57■■■□□ 2
PTCH1-210ENST00000468211 PRKAG3Q9UGI9 489 aa27.57■■■□□ 2
PTCH1-210ENST00000468211 SEPT9Q9UHD8 586 aaPredicted RBP27.57■■■□□ 2
PTCH1-210ENST00000468211 DDX25Q9UHL0 483 aaKnown RBP27.57■■■□□ 2
PTCH1-210ENST00000468211 TPCN1Q9ULQ1 816 aa27.57■■■□□ 2
PTCH1-210ENST00000468211 FAM50BQ9Y247 325 aa27.57■■■□□ 2
PTCH1-210ENST00000468211 FGF18O76093 207 aa27.56■■■□□ 2
PTCH1-210ENST00000468211 ERVFC1P60507 584 aa27.56■■■□□ 2
PTCH1-210ENST00000468211 ADHFE1Q8IWW8 467 aa27.56■■■□□ 2
PTCH1-210ENST00000468211 EFHBQ8N7U6 833 aa27.56■■■□□ 2
PTCH1-210ENST00000468211 CASD1Q96PB1 797 aa27.56■■■□□ 2
PTCH1-210ENST00000468211 PHF20Q9BVI0 1012 aa27.56■■■□□ 2
PTCH1-210ENST00000468211 RNF216Q9NWF9 866 aaPredicted RBP27.56■■■□□ 2
PTCH1-210ENST00000468211 CD207Q9UJ71 328 aa27.56■■■□□ 2
PTCH1-210ENST00000468211 GLP2RO95838 553 aa27.55■■■□□ 2
PTCH1-210ENST00000468211 NDUFV1P49821 464 aa27.55■■■□□ 2
PTCH1-210ENST00000468211 XKR3Q5GH77 459 aa27.55■■■□□ 2
PTCH1-210ENST00000468211 KRT25Q7Z3Z0 450 aa27.55■■■□□ 2
PTCH1-210ENST00000468211 ECHDC2Q86YB7 292 aa27.55■■■□□ 2
PTCH1-210ENST00000468211 FAM177A1Q8N128 213 aaPredicted RBP27.55■■■□□ 2
PTCH1-210ENST00000468211 TMEM117Q9H0C3 514 aa27.55■■■□□ 2
PTCH1-210ENST00000468211 AAASQ9NRG9 546 aa27.55■■■□□ 2
PTCH1-210ENST00000468211 EML1O00423 815 aa27.54■■■□□ 2
PTCH1-210ENST00000468211 RBM10P98175 930 aaKnown RBP27.54■■■□□ 2
PTCH1-210ENST00000468211 SMAD4Q13485 552 aaKnown RBP27.54■■■□□ 2
PTCH1-210ENST00000468211 LETM2Q2VYF4 491 aa27.54■■■□□ 2
PTCH1-210ENST00000468211 THNSL1Q8IYQ7 743 aa27.54■■■□□ 2
PTCH1-210ENST00000468211 OXER1Q8TDS5 423 aa27.54■■■□□ 2
PTCH1-210ENST00000468211 NLRP7Q8WX94 980 aa27.54■■■□□ 2
PTCH1-210ENST00000468211 PPP2R3CQ969Q6 453 aa27.54■■■□□ 2
PTCH1-210ENST00000468211 SCLT1Q96NL6 688 aa27.54■■■□□ 2
PTCH1-210ENST00000468211 SLKQ9H2G2 1235 aaPredicted RBP27.54■■■□□ 2
PTCH1-210ENST00000468211 IGKV6-21A0A0C4DH24 114 aa27.53■■■□□ 2
PTCH1-210ENST00000468211 PER2O15055 1255 aa27.53■■■□□ 2
PTCH1-210ENST00000468211 PFKFB2O60825 505 aa27.53■■■□□ 2
PTCH1-210ENST00000468211 CTDNEP1O95476 244 aa27.53■■■□□ 2
PTCH1-210ENST00000468211 ZSCAN20P17040 1043 aaPredicted RBP27.53■■■□□ 2
PTCH1-210ENST00000468211 UBE3AQ05086 875 aa27.53■■■□□ 2
PTCH1-210ENST00000468211 CLLU1OSQ5K130 101 aa27.53■■■□□ 2
PTCH1-210ENST00000468211 ANO5Q75V66 913 aa27.53■■■□□ 2
PTCH1-210ENST00000468211 ZNF710Q8N1W2 664 aa27.53■■■□□ 2
PTCH1-210ENST00000468211 MICAL1Q8TDZ2 1067 aa27.53■■■□□ 2
PTCH1-210ENST00000468211 TLR9Q9NR96 1032 aa27.53■■■□□ 2
PTCH1-210ENST00000468211 VAV3Q9UKW4 847 aa27.53■■■□□ 2
PTCH1-210ENST00000468211 STK36Q9NRP7 1315 aa27.52■■■□□ 2
PTCH1-210ENST00000468211 DDX11L8A8MPP1 907 aa27.52■■■□□ 2
PTCH1-210ENST00000468211 PBX3P40426 434 aa27.52■■■□□ 2
PTCH1-210ENST00000468211 RNF169Q8NCN4 708 aa27.52■■■□□ 2
PTCH1-210ENST00000468211 TLE6Q9H808 572 aa27.52■■■□□ 2
PTCH1-210ENST00000468211 KCNMB3Q9NPA1 279 aa27.52■■■□□ 2
PTCH1-210ENST00000468211 BARX2Q9UMQ3 279 aaPredicted RBP27.52■■■□□ 2
PTCH1-210ENST00000468211 TRIOO75962 3097 aa27.52■■■□□ 2
PTCH1-210ENST00000468211 EYA4O95677 639 aa27.51■■□□□ 1.99
PTCH1-210ENST00000468211 ATF7P17544 494 aaPredicted RBP27.51■■□□□ 1.99
PTCH1-210ENST00000468211 LAG3P18627 525 aa27.51■■□□□ 1.99
PTCH1-210ENST00000468211 EARS2Q5JPH6 523 aaKnown RBP27.51■■□□□ 1.99
PTCH1-210ENST00000468211 PLA2G4FQ68DD2 849 aa27.51■■□□□ 1.99
PTCH1-210ENST00000468211 ZNF598Q86UK7 904 aaKnown RBP27.51■■□□□ 1.99
PTCH1-210ENST00000468211 VN1R2Q8NFZ6 395 aa27.51■■□□□ 1.99
PTCH1-210ENST00000468211 A0A087WZ62 844 aa27.5■■□□□ 1.99
PTCH1-210ENST00000468211 CCDC194A0A1B0GVG4 234 aa27.5■■□□□ 1.99
PTCH1-210ENST00000468211 FSCN2O14926 492 aa27.5■■□□□ 1.99
PTCH1-210ENST00000468211 CDKL5O76039 1030 aa27.5■■□□□ 1.99
PTCH1-210ENST00000468211 NEK8Q86SG6 692 aa27.5■■□□□ 1.99
PTCH1-210ENST00000468211 KSR1Q8IVT5 923 aa27.5■■□□□ 1.99
PTCH1-210ENST00000468211 FDXACB1Q9BRP7 624 aaPredicted RBP27.5■■□□□ 1.99
PTCH1-210ENST00000468211 WRAP73Q9P2S5 460 aaPredicted RBP27.5■■□□□ 1.99
PTCH1-210ENST00000468211 ARID2Q68CP9 1835 aa27.49■■□□□ 1.99
PTCH1-210ENST00000468211 A0A0U1RQF3 1178 aa27.49■■□□□ 1.99
PTCH1-210ENST00000468211 FAM205CA6NFA0 338 aa27.49■■□□□ 1.99
PTCH1-210ENST00000468211 DCXO43602 365 aa27.49■■□□□ 1.99
PTCH1-210ENST00000468211 MAFO75444 373 aaPredicted RBP27.49■■□□□ 1.99
PTCH1-210ENST00000468211 NEFLP07196 543 aa27.49■■□□□ 1.99
PTCH1-210ENST00000468211 ALADP13716 330 aa27.49■■□□□ 1.99
PTCH1-210ENST00000468211 AK2P54819 239 aa27.49■■□□□ 1.99
PTCH1-210ENST00000468211 PSMC5P62195 406 aa27.49■■□□□ 1.99
PTCH1-210ENST00000468211 COASYQ13057 564 aa27.49■■□□□ 1.99
PTCH1-210ENST00000468211 PPP2R5CQ13362 524 aa27.49■■□□□ 1.99
PTCH1-210ENST00000468211 CSPP1Q1MSJ5 1256 aa27.49■■□□□ 1.99
PTCH1-210ENST00000468211 KCNT2Q6UVM3 1135 aa27.49■■□□□ 1.99
PTCH1-210ENST00000468211 PIK3AP1Q6ZUJ8 805 aa27.49■■□□□ 1.99
PTCH1-210ENST00000468211 ZNF579Q8NAF0 562 aaKnown RBP27.49■■□□□ 1.99
PTCH1-210ENST00000468211 SMRP1Q8NCR6 262 aa27.49■■□□□ 1.99
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms