RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 FAM178BQ8IXR5 827 aa19.85■□□□□ 0.77
COL7A1-205ENST00000465238 CKAP2LQ8IYA6 745 aa19.85■□□□□ 0.77
COL7A1-205ENST00000465238 CMTR2Q8IYT2 770 aaKnown RBP19.85■□□□□ 0.77
COL7A1-205ENST00000465238 TTC12Q9H892 705 aaPredicted RBP19.85■□□□□ 0.77
COL7A1-205ENST00000465238 VAV3Q9UKW4 847 aa19.85■□□□□ 0.77
COL7A1-205ENST00000465238 ATG2AQ2TAZ0 1938 aa19.84■□□□□ 0.77
COL7A1-205ENST00000465238 GRXCR2A6NFK2 248 aa19.84■□□□□ 0.77
COL7A1-205ENST00000465238 GRM6O15303 877 aa19.84■□□□□ 0.77
COL7A1-205ENST00000465238 NCAPH2Q6IBW4 605 aa19.84■□□□□ 0.77
COL7A1-205ENST00000465238 KIAA0319LQ8IZA0 1049 aa19.84■□□□□ 0.77
COL7A1-205ENST00000465238 ZSCAN16Q9H4T2 348 aaPredicted RBP19.84■□□□□ 0.77
COL7A1-205ENST00000465238 EPHX3Q9H6B9 360 aa19.84■□□□□ 0.77
COL7A1-205ENST00000465238 EIF4ENIF1Q9NRA8 985 aaKnown RBP19.84■□□□□ 0.77
COL7A1-205ENST00000465238 MAFBQ9Y5Q3 323 aaPredicted RBP19.84■□□□□ 0.77
COL7A1-205ENST00000465238 H3BQ06 376 aaPredicted RBP19.83■□□□□ 0.77
COL7A1-205ENST00000465238 EML1O00423 815 aa19.83■□□□□ 0.77
COL7A1-205ENST00000465238 LAD1O00515 517 aa19.83■□□□□ 0.77
COL7A1-205ENST00000465238 RESTQ13127 1097 aa19.83■□□□□ 0.77
COL7A1-205ENST00000465238 PTGDRQ13258 359 aa19.83■□□□□ 0.77
COL7A1-205ENST00000465238 EPHA7Q15375 998 aa19.83■□□□□ 0.77
COL7A1-205ENST00000465238 NAALADL2Q58DX5 795 aa19.83■□□□□ 0.77
COL7A1-205ENST00000465238 ODR4Q5SWX8 454 aa19.83■□□□□ 0.77
COL7A1-205ENST00000465238 BBXQ8WY36 941 aaPredicted RBP19.83■□□□□ 0.77
COL7A1-205ENST00000465238 P2RX5Q93086 422 aa19.83■□□□□ 0.77
COL7A1-205ENST00000465238 FAM50BQ9Y247 325 aa19.83■□□□□ 0.77
COL7A1-205ENST00000465238 KIAA1671Q9BY89 1806 aa19.82■□□□□ 0.76
COL7A1-205ENST00000465238 ZBTB42B2RXF5 422 aa19.82■□□□□ 0.76
COL7A1-205ENST00000465238 RPS6KA5O75582 802 aa19.82■□□□□ 0.76
COL7A1-205ENST00000465238 IL9P15248 144 aa19.82■□□□□ 0.76
COL7A1-205ENST00000465238 ATP4AP20648 1035 aa19.82■□□□□ 0.76
COL7A1-205ENST00000465238 NFX1Q12986 1120 aaKnown RBP19.82■□□□□ 0.76
COL7A1-205ENST00000465238 TMEM266Q2M3C6 531 aa19.82■□□□□ 0.76
COL7A1-205ENST00000465238 EP400NLQ6ZTU2 488 aa19.82■□□□□ 0.76
COL7A1-205ENST00000465238 GJD3Q8N144 294 aa19.82■□□□□ 0.76
COL7A1-205ENST00000465238 C4orf32Q8N8J7 132 aa19.82■□□□□ 0.76
COL7A1-205ENST00000465238 TMX1Q9H3N1 280 aa19.82■□□□□ 0.76
COL7A1-205ENST00000465238 CD320Q9NPF0 282 aa19.82■□□□□ 0.76
COL7A1-205ENST00000465238 RNF216Q9NWF9 866 aaPredicted RBP19.82■□□□□ 0.76
COL7A1-205ENST00000465238 CLDND1Q9NY35 253 aa19.82■□□□□ 0.76
COL7A1-205ENST00000465238 LRFN2Q9ULH4 789 aa19.82■□□□□ 0.76
COL7A1-205ENST00000465238 GINS2Q9Y248 185 aa19.82■□□□□ 0.76
COL7A1-205ENST00000465238 MRPL42Q9Y6G3 142 aaKnown RBP19.82■□□□□ 0.76
COL7A1-205ENST00000465238 DKC1O60832 514 aaKnown RBP eCLIP19.81■□□□□ 0.76
COL7A1-205ENST00000465238 TECP42680 631 aa19.81■□□□□ 0.76
COL7A1-205ENST00000465238 SARSP49591 514 aaKnown RBP19.81■□□□□ 0.76
COL7A1-205ENST00000465238 SPIRE1Q08AE8 756 aa19.81■□□□□ 0.76
COL7A1-205ENST00000465238 TRMT1LQ7Z2T5 733 aaKnown RBP19.81■□□□□ 0.76
COL7A1-205ENST00000465238 FAM167AQ96KS9 214 aa19.81■□□□□ 0.76
COL7A1-205ENST00000465238 ERVK-5Q9HDB9 667 aa19.81■□□□□ 0.76
COL7A1-205ENST00000465238 NRBP2Q9NSY0 501 aa19.81■□□□□ 0.76
COL7A1-205ENST00000465238 PLAGL2Q9UPG8 496 aa19.81■□□□□ 0.76
COL7A1-205ENST00000465238 CEP131Q9UPN4 1083 aa19.81■□□□□ 0.76
COL7A1-205ENST00000465238 NOC2LQ9Y3T9 749 aaKnown RBP19.81■□□□□ 0.76
COL7A1-205ENST00000465238 GPR182O15218 404 aa19.8■□□□□ 0.76
COL7A1-205ENST00000465238 C22orf31O95567 290 aa19.8■□□□□ 0.76
COL7A1-205ENST00000465238 P4HBP07237 508 aaKnown RBP19.8■□□□□ 0.76
COL7A1-205ENST00000465238 ZSCAN22P10073 491 aaPredicted RBP19.8■□□□□ 0.76
COL7A1-205ENST00000465238 PSMC5P62195 406 aa19.8■□□□□ 0.76
COL7A1-205ENST00000465238 CTC1Q2NKJ3 1217 aa19.8■□□□□ 0.76
COL7A1-205ENST00000465238 PAN2Q504Q3 1202 aaKnown RBP19.8■□□□□ 0.76
COL7A1-205ENST00000465238 TMEM31Q5JXX7 168 aa19.8■□□□□ 0.76
COL7A1-205ENST00000465238 FOXD4L5Q5VV16 416 aaPredicted RBP19.8■□□□□ 0.76
COL7A1-205ENST00000465238 FOXD4L4Q8WXT5 416 aaPredicted RBP19.8■□□□□ 0.76
COL7A1-205ENST00000465238 KHSRPQ92945 711 aaKnown RBP eCLIP19.8■□□□□ 0.76
COL7A1-205ENST00000465238 CDHR5Q9HBB8 845 aa19.8■□□□□ 0.76
COL7A1-205ENST00000465238 ALG13Q9NP73 1137 aaKnown RBP19.8■□□□□ 0.76
COL7A1-205ENST00000465238 C1orf112Q9NSG2 853 aa19.8■□□□□ 0.76
COL7A1-205ENST00000465238 RAPGEFL1Q9UHV5 662 aa19.8■□□□□ 0.76
COL7A1-205ENST00000465238 PCDHB7Q9Y5E2 793 aa19.8■□□□□ 0.76
COL7A1-205ENST00000465238 DENND3A2RUS2 1198 aa19.79■□□□□ 0.76
COL7A1-205ENST00000465238 PI4K2BG5E9Z4 385 aa19.79■□□□□ 0.76
COL7A1-205ENST00000465238 BMP15O95972 392 aa19.79■□□□□ 0.76
COL7A1-205ENST00000465238 SSTR3P32745 418 aaPredicted RBP19.79■□□□□ 0.76
COL7A1-205ENST00000465238 PRPHP41219 470 aa19.79■□□□□ 0.76
COL7A1-205ENST00000465238 QARSP47897 775 aaKnown RBP19.79■□□□□ 0.76
COL7A1-205ENST00000465238 CRYBB1P53674 252 aaPredicted RBP19.79■□□□□ 0.76
COL7A1-205ENST00000465238 HYAL1Q12794 435 aa19.79■□□□□ 0.76
COL7A1-205ENST00000465238 UGCGQ16739 394 aa19.79■□□□□ 0.76
COL7A1-205ENST00000465238 FAM173BQ6P4H8 233 aa19.79■□□□□ 0.76
COL7A1-205ENST00000465238 DTHD1Q6ZMT9 781 aa19.79■□□□□ 0.76
COL7A1-205ENST00000465238 SLC24A5Q71RS6 500 aa19.79■□□□□ 0.76
COL7A1-205ENST00000465238 METTL13Q8N6R0 699 aa19.79■□□□□ 0.76
COL7A1-205ENST00000465238 TMEM40Q8WWA1 233 aa19.79■□□□□ 0.76
COL7A1-205ENST00000465238 PPP2R3CQ969Q6 453 aa19.79■□□□□ 0.76
COL7A1-205ENST00000465238 LRFN3Q9BTN0 628 aa19.79■□□□□ 0.76
COL7A1-205ENST00000465238 RAB34Q9BZG1 259 aa19.79■□□□□ 0.76
COL7A1-205ENST00000465238 RGS18Q9NS28 235 aa19.79■□□□□ 0.76
COL7A1-205ENST00000465238 DAXXQ9UER7 740 aaPredicted RBP19.79■□□□□ 0.76
COL7A1-205ENST00000465238 ST3GAL5Q9UNP4 418 aa19.79■□□□□ 0.76
COL7A1-205ENST00000465238 POTEMA6NI47 508 aa19.78■□□□□ 0.76
COL7A1-205ENST00000465238 MAGEB2O15479 319 aa19.78■□□□□ 0.76
COL7A1-205ENST00000465238 ZNF862O60290 1169 aa19.78■□□□□ 0.76
COL7A1-205ENST00000465238 MGEA5O60502 916 aa19.78■□□□□ 0.76
COL7A1-205ENST00000465238 GPR37L1O60883 481 aa19.78■□□□□ 0.76
COL7A1-205ENST00000465238 OATP04181 439 aa19.78■□□□□ 0.76
COL7A1-205ENST00000465238 ITGB1P05556 798 aa19.78■□□□□ 0.76
COL7A1-205ENST00000465238 LTBRP36941 435 aa19.78■□□□□ 0.76
COL7A1-205ENST00000465238 ANP32AP39687 249 aaKnown RBP19.78■□□□□ 0.76
COL7A1-205ENST00000465238 FXR2P51116 673 aaKnown RBP eCLIP19.78■□□□□ 0.76
COL7A1-205ENST00000465238 ATP2C1P98194 919 aaPredicted RBP19.78■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms