RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 MAFO75444 373 aaPredicted RBP23.78■■□□□ 1.4
HMGB3-205ENST00000455596 LINC00271P0C7V0 271 aa23.78■■□□□ 1.4
HMGB3-205ENST00000455596 BMPR1AP36894 532 aa23.78■■□□□ 1.4
HMGB3-205ENST00000455596 DRP2Q13474 957 aa23.78■■□□□ 1.4
HMGB3-205ENST00000455596 AAK1Q2M2I8 961 aa23.78■■□□□ 1.4
HMGB3-205ENST00000455596 C4orf19Q8IY42 314 aa23.78■■□□□ 1.4
HMGB3-205ENST00000455596 LXNQ9BS40 222 aa23.78■■□□□ 1.4
HMGB3-205ENST00000455596 WRAP73Q9P2S5 460 aaPredicted RBP23.78■■□□□ 1.4
HMGB3-205ENST00000455596 PLXNA4Q9HCM2 1894 aa23.77■■□□□ 1.4
HMGB3-205ENST00000455596 DARSP14868 501 aaKnown RBP23.77■■□□□ 1.4
HMGB3-205ENST00000455596 DSC3Q14574 896 aa23.77■■□□□ 1.4
HMGB3-205ENST00000455596 PAN2Q504Q3 1202 aaKnown RBP23.77■■□□□ 1.4
HMGB3-205ENST00000455596 IL27Q8NEV9 243 aa23.77■■□□□ 1.4
HMGB3-205ENST00000455596 DYDC2Q96IM9 177 aa23.77■■□□□ 1.4
HMGB3-205ENST00000455596 CEP170P1Q96L14 293 aa23.77■■□□□ 1.4
HMGB3-205ENST00000455596 C11orf84Q9BUA3 381 aaPredicted RBP23.77■■□□□ 1.4
HMGB3-205ENST00000455596 TTC12Q9H892 705 aaPredicted RBP23.77■■□□□ 1.4
HMGB3-205ENST00000455596 RGL1Q9NZL6 768 aa23.77■■□□□ 1.4
HMGB3-205ENST00000455596 PPME1Q9Y570 386 aa23.77■■□□□ 1.4
HMGB3-205ENST00000455596 MRPL42Q9Y6G3 142 aaKnown RBP23.77■■□□□ 1.4
HMGB3-205ENST00000455596 WNT7AO00755 349 aa23.76■■□□□ 1.39
HMGB3-205ENST00000455596 ST18O60284 1047 aa23.76■■□□□ 1.39
HMGB3-205ENST00000455596 ZSCAN20P17040 1043 aaPredicted RBP23.76■■□□□ 1.39
HMGB3-205ENST00000455596 NPEPPSP55786 919 aa23.76■■□□□ 1.39
HMGB3-205ENST00000455596 CTTNQ14247 550 aaKnown RBP23.76■■□□□ 1.39
HMGB3-205ENST00000455596 OTUD6AQ7L8S5 288 aa23.76■■□□□ 1.39
HMGB3-205ENST00000455596 EXOC8Q8IYI6 725 aa23.76■■□□□ 1.39
HMGB3-205ENST00000455596 SLC7A3Q8WY07 619 aa23.76■■□□□ 1.39
HMGB3-205ENST00000455596 HLA-CQ95604 372 aa23.76■■□□□ 1.39
HMGB3-205ENST00000455596 PLVAPQ9BX97 442 aa23.76■■□□□ 1.39
HMGB3-205ENST00000455596 GCOM2Q9BZD3 368 aaPredicted RBP23.76■■□□□ 1.39
HMGB3-205ENST00000455596 FOXP1Q9H334 677 aaPredicted RBP23.76■■□□□ 1.39
HMGB3-205ENST00000455596 ZSWIM4Q9H7M6 989 aa23.76■■□□□ 1.39
HMGB3-205ENST00000455596 SUCLA2Q9P2R7 463 aaPredicted RBP23.76■■□□□ 1.39
HMGB3-205ENST00000455596 YWHABP31946 246 aaKnown RBP23.75■■□□□ 1.39
HMGB3-205ENST00000455596 TXKP42681 527 aa23.75■■□□□ 1.39
HMGB3-205ENST00000455596 GATMP50440 423 aa23.75■■□□□ 1.39
HMGB3-205ENST00000455596 POLGP54098 1239 aaPredicted RBP23.75■■□□□ 1.39
HMGB3-205ENST00000455596 CYP4A11Q02928 519 aa23.75■■□□□ 1.39
HMGB3-205ENST00000455596 TFF2Q03403 129 aa23.75■■□□□ 1.39
HMGB3-205ENST00000455596 TIGD5Q53EQ6 642 aa23.75■■□□□ 1.39
HMGB3-205ENST00000455596 ZNF410Q86VK4 478 aa23.75■■□□□ 1.39
HMGB3-205ENST00000455596 RHPN2Q8IUC4 686 aa23.75■■□□□ 1.39
HMGB3-205ENST00000455596 FBXO18Q8NFZ0 1043 aa23.75■■□□□ 1.39
HMGB3-205ENST00000455596 ELAC1Q9H777 363 aaKnown RBP23.75■■□□□ 1.39
HMGB3-205ENST00000455596 TMEM161AQ9NX61 479 aa23.75■■□□□ 1.39
HMGB3-205ENST00000455596 REV3LO60673 3130 aa23.74■■□□□ 1.39
HMGB3-205ENST00000455596 A0A087WZ62 844 aa23.74■■□□□ 1.39
HMGB3-205ENST00000455596 ATP2B1P20020 1258 aa23.74■■□□□ 1.39
HMGB3-205ENST00000455596 MCM7P33993 719 aa23.74■■□□□ 1.39
HMGB3-205ENST00000455596 RFC5P40937 340 aa23.74■■□□□ 1.39
HMGB3-205ENST00000455596 FAM189BP81408 668 aa23.74■■□□□ 1.39
HMGB3-205ENST00000455596 GNL2Q13823 731 aaKnown RBP23.74■■□□□ 1.39
HMGB3-205ENST00000455596 TPH2Q8IWU9 490 aa23.74■■□□□ 1.39
HMGB3-205ENST00000455596 NEK9Q8TD19 979 aa23.74■■□□□ 1.39
HMGB3-205ENST00000455596 MTMR9Q96QG7 549 aa23.74■■□□□ 1.39
HMGB3-205ENST00000455596 EIF2AK1Q9BQI3 630 aaKnown RBP23.74■■□□□ 1.39
HMGB3-205ENST00000455596 FDXACB1Q9BRP7 624 aaPredicted RBP23.74■■□□□ 1.39
HMGB3-205ENST00000455596 INO80BQ9C086 356 aaPredicted RBP23.74■■□□□ 1.39
HMGB3-205ENST00000455596 LMAN2LQ9H0V9 348 aa23.74■■□□□ 1.39
HMGB3-205ENST00000455596 DHX33Q9H6R0 707 aaKnown RBP23.74■■□□□ 1.39
HMGB3-205ENST00000455596 ATP6V0A4Q9HBG4 840 aa23.74■■□□□ 1.39
HMGB3-205ENST00000455596 SLITRK3O94933 977 aa23.73■■□□□ 1.39
HMGB3-205ENST00000455596 FGFR4P22455 802 aa23.73■■□□□ 1.39
HMGB3-205ENST00000455596 ZNF579Q8NAF0 562 aaKnown RBP23.73■■□□□ 1.39
HMGB3-205ENST00000455596 P2RX5Q93086 422 aa23.73■■□□□ 1.39
HMGB3-205ENST00000455596 TBKBP1A7MCY6 615 aa23.72■■□□□ 1.39
HMGB3-205ENST00000455596 SFPQP23246 707 aaKnown RBP eCLIP23.72■■□□□ 1.39
HMGB3-205ENST00000455596 NAALADL2Q58DX5 795 aa23.72■■□□□ 1.39
HMGB3-205ENST00000455596 XKR9Q5GH70 373 aa23.72■■□□□ 1.39
HMGB3-205ENST00000455596 FAM102BQ5T8I3 360 aa23.72■■□□□ 1.39
HMGB3-205ENST00000455596 NLRP4Q96MN2 994 aa23.72■■□□□ 1.39
HMGB3-205ENST00000455596 TMEM60Q9H2L4 133 aa23.72■■□□□ 1.39
HMGB3-205ENST00000455596 GRM6O15303 877 aa23.71■■□□□ 1.39
HMGB3-205ENST00000455596 GAS2O43903 313 aaKnown RBP23.71■■□□□ 1.39
HMGB3-205ENST00000455596 CSDE1O75534 798 aaKnown RBP23.71■■□□□ 1.39
HMGB3-205ENST00000455596 ORC2Q13416 577 aaPredicted RBP23.71■■□□□ 1.39
HMGB3-205ENST00000455596 KSR1Q8IVT5 923 aa23.71■■□□□ 1.39
HMGB3-205ENST00000455596 TCP11Q8WWU5 503 aa23.71■■□□□ 1.39
HMGB3-205ENST00000455596 HSD17B14Q9BPX1 270 aa23.71■■□□□ 1.39
HMGB3-205ENST00000455596 NSUN3Q9H649 340 aaKnown RBP23.71■■□□□ 1.39
HMGB3-205ENST00000455596 DACT1Q9NYF0 836 aa23.71■■□□□ 1.39
HMGB3-205ENST00000455596 COL4A3BPQ9Y5P4 624 aa23.71■■□□□ 1.39
HMGB3-205ENST00000455596 HOXA2O43364 376 aa23.7■■□□□ 1.38
HMGB3-205ENST00000455596 LYPLA2O95372 231 aa23.7■■□□□ 1.38
HMGB3-205ENST00000455596 FGFR1P11362 822 aa23.7■■□□□ 1.38
HMGB3-205ENST00000455596 KCNQ1P51787 676 aa23.7■■□□□ 1.38
HMGB3-205ENST00000455596 EMC2Q15006 297 aa23.7■■□□□ 1.38
HMGB3-205ENST00000455596 SPOUT1Q5T280 376 aaKnown RBP23.7■■□□□ 1.38
HMGB3-205ENST00000455596 ECHDC2Q86YB7 292 aa23.7■■□□□ 1.38
HMGB3-205ENST00000455596 NOSTRINQ8IVI9 506 aa23.7■■□□□ 1.38
HMGB3-205ENST00000455596 ADAMTS19Q8TE59 1207 aa23.7■■□□□ 1.38
HMGB3-205ENST00000455596 PSPC1Q8WXF1 523 aaKnown RBP23.7■■□□□ 1.38
HMGB3-205ENST00000455596 TMEM143Q96AN5 459 aa23.7■■□□□ 1.38
HMGB3-205ENST00000455596 MTRQ99707 1265 aa23.7■■□□□ 1.38
HMGB3-205ENST00000455596 CHST12Q9NRB3 414 aa23.7■■□□□ 1.38
HMGB3-205ENST00000455596 AAASQ9NRG9 546 aa23.7■■□□□ 1.38
HMGB3-205ENST00000455596 BMP2KQ9NSY1 1161 aaPredicted RBP23.7■■□□□ 1.38
HMGB3-205ENST00000455596 PLAGL2Q9UPG8 496 aa23.7■■□□□ 1.38
HMGB3-205ENST00000455596 POTEMA6NI47 508 aa23.69■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms