RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 PSMC5P62195 406 aa23.32■■□□□ 1.32
SDC1-205ENST00000447124 ZNF579Q8NAF0 562 aaKnown RBP23.32■■□□□ 1.32
SDC1-205ENST00000447124 KLHL23Q8NBE8 558 aa23.32■■□□□ 1.32
SDC1-205ENST00000447124 NEK9Q8TD19 979 aa23.32■■□□□ 1.32
SDC1-205ENST00000447124 P2RX5Q93086 422 aa23.32■■□□□ 1.32
SDC1-205ENST00000447124 WRAP73Q9P2S5 460 aaPredicted RBP23.32■■□□□ 1.32
SDC1-205ENST00000447124 HCSTQ9UBK5 93 aa23.32■■□□□ 1.32
SDC1-205ENST00000447124 TBKBP1A7MCY6 615 aa23.31■■□□□ 1.32
SDC1-205ENST00000447124 KRT2P35908 639 aa23.31■■□□□ 1.32
SDC1-205ENST00000447124 POTEDQ86YR6 584 aa23.31■■□□□ 1.32
SDC1-205ENST00000447124 ZNF710Q8N1W2 664 aa23.31■■□□□ 1.32
SDC1-205ENST00000447124 ELAC1Q9H777 363 aaKnown RBP23.31■■□□□ 1.32
SDC1-205ENST00000447124 RNF19AQ9NV58 838 aa23.31■■□□□ 1.32
SDC1-205ENST00000447124 BTBD18B2RXH4 712 aa23.3■■□□□ 1.32
SDC1-205ENST00000447124 H3BQ06 376 aaPredicted RBP23.3■■□□□ 1.32
SDC1-205ENST00000447124 TBX3O15119 743 aa23.3■■□□□ 1.32
SDC1-205ENST00000447124 MAFO75444 373 aaPredicted RBP23.3■■□□□ 1.32
SDC1-205ENST00000447124 CSPG5O95196 566 aa23.3■■□□□ 1.32
SDC1-205ENST00000447124 MMP1P03956 469 aa23.3■■□□□ 1.32
SDC1-205ENST00000447124 CENPBP07199 599 aaPredicted RBP23.3■■□□□ 1.32
SDC1-205ENST00000447124 FGFR1P11362 822 aa23.3■■□□□ 1.32
SDC1-205ENST00000447124 LTBRP36941 435 aa23.3■■□□□ 1.32
SDC1-205ENST00000447124 QARSP47897 775 aaKnown RBP23.3■■□□□ 1.32
SDC1-205ENST00000447124 FOSBP53539 338 aa23.3■■□□□ 1.32
SDC1-205ENST00000447124 NPEPPSP55786 919 aa23.3■■□□□ 1.32
SDC1-205ENST00000447124 HYAL1Q12794 435 aa23.3■■□□□ 1.32
SDC1-205ENST00000447124 NAALADL2Q58DX5 795 aa23.3■■□□□ 1.32
SDC1-205ENST00000447124 PLA2G4FQ68DD2 849 aa23.3■■□□□ 1.32
SDC1-205ENST00000447124 PABPC5Q96DU9 382 aaKnown RBP23.3■■□□□ 1.32
SDC1-205ENST00000447124 ATP6V0A4Q9HBG4 840 aa23.3■■□□□ 1.32
SDC1-205ENST00000447124 CD320Q9NPF0 282 aa23.3■■□□□ 1.32
SDC1-205ENST00000447124 TYW1Q9NV66 732 aaKnown RBP23.3■■□□□ 1.32
SDC1-205ENST00000447124 TMEM161AQ9NX61 479 aa23.3■■□□□ 1.32
SDC1-205ENST00000447124 WNT7AO00755 349 aa23.29■■□□□ 1.32
SDC1-205ENST00000447124 EIF5BO60841 1220 aaKnown RBP23.29■■□□□ 1.32
SDC1-205ENST00000447124 GTF2F1P35269 517 aaKnown RBP eCLIP23.29■■□□□ 1.32
SDC1-205ENST00000447124 IRS1P35568 1242 aa23.29■■□□□ 1.32
SDC1-205ENST00000447124 SPIRE1Q08AE8 756 aa23.29■■□□□ 1.32
SDC1-205ENST00000447124 EPHA7Q15375 998 aa23.29■■□□□ 1.32
SDC1-205ENST00000447124 CWH43Q9H720 699 aa23.29■■□□□ 1.32
SDC1-205ENST00000447124 RGL1Q9NZL6 768 aa23.29■■□□□ 1.32
SDC1-205ENST00000447124 SUCLA2Q9P2R7 463 aaPredicted RBP23.29■■□□□ 1.32
SDC1-205ENST00000447124 A0A087WZ62 844 aa23.28■■□□□ 1.32
SDC1-205ENST00000447124 P4HBP07237 508 aaKnown RBP23.28■■□□□ 1.32
SDC1-205ENST00000447124 IL9P15248 144 aa23.28■■□□□ 1.32
SDC1-205ENST00000447124 ZSCAN20P17040 1043 aaPredicted RBP23.28■■□□□ 1.32
SDC1-205ENST00000447124 CTC1Q2NKJ3 1217 aa23.28■■□□□ 1.32
SDC1-205ENST00000447124 LRRC55Q6ZSA7 311 aa23.28■■□□□ 1.32
SDC1-205ENST00000447124 ECHDC2Q86YB7 292 aa23.28■■□□□ 1.32
SDC1-205ENST00000447124 KSR1Q8IVT5 923 aa23.28■■□□□ 1.32
SDC1-205ENST00000447124 POF1BQ8WVV4 589 aa23.28■■□□□ 1.32
SDC1-205ENST00000447124 NLRP7Q8WX94 980 aa23.28■■□□□ 1.32
SDC1-205ENST00000447124 NAP1L4Q99733 375 aaKnown RBP23.28■■□□□ 1.32
SDC1-205ENST00000447124 FDXACB1Q9BRP7 624 aaPredicted RBP23.28■■□□□ 1.32
SDC1-205ENST00000447124 GRXCR2A6NFK2 248 aa23.27■■□□□ 1.32
SDC1-205ENST00000447124 ZBTB39O15060 712 aa23.27■■□□□ 1.32
SDC1-205ENST00000447124 DLX2Q07687 328 aaPredicted RBP23.27■■□□□ 1.32
SDC1-205ENST00000447124 PTCRAQ6ISU1 281 aaPredicted RBP23.27■■□□□ 1.32
SDC1-205ENST00000447124 EP400NLQ6ZTU2 488 aa23.27■■□□□ 1.32
SDC1-205ENST00000447124 CASD1Q96PB1 797 aa23.27■■□□□ 1.32
SDC1-205ENST00000447124 KIF2CQ99661 725 aa23.27■■□□□ 1.32
SDC1-205ENST00000447124 GCOM2Q9BZD3 368 aaPredicted RBP23.27■■□□□ 1.32
SDC1-205ENST00000447124 CYP26B1Q9NR63 512 aa23.27■■□□□ 1.32
SDC1-205ENST00000447124 RNF216Q9NWF9 866 aaPredicted RBP23.27■■□□□ 1.32
SDC1-205ENST00000447124 CLDND1Q9NY35 253 aa23.27■■□□□ 1.32
SDC1-205ENST00000447124 FNDC1Q4ZHG4 1894 aaPredicted RBP23.27■■□□□ 1.32
SDC1-205ENST00000447124 ATG2AQ2TAZ0 1938 aa23.27■■□□□ 1.32
SDC1-205ENST00000447124 MARCH6O60337 910 aa23.26■■□□□ 1.31
SDC1-205ENST00000447124 CDC42EP1Q00587 391 aa23.26■■□□□ 1.31
SDC1-205ENST00000447124 NCAPH2Q6IBW4 605 aa23.26■■□□□ 1.31
SDC1-205ENST00000447124 ADGRD2Q7Z7M1 963 aa23.26■■□□□ 1.31
SDC1-205ENST00000447124 ZNF598Q86UK7 904 aaKnown RBP23.26■■□□□ 1.31
SDC1-205ENST00000447124 C4orf19Q8IY42 314 aa23.26■■□□□ 1.31
SDC1-205ENST00000447124 DIS3L2Q8IYB7 885 aaKnown RBP23.26■■□□□ 1.31
SDC1-205ENST00000447124 KHSRPQ92945 711 aaKnown RBP eCLIP23.26■■□□□ 1.31
SDC1-205ENST00000447124 DYDC2Q96IM9 177 aa23.26■■□□□ 1.31
SDC1-205ENST00000447124 SCLT1Q96NL6 688 aa23.26■■□□□ 1.31
SDC1-205ENST00000447124 TMEM117Q9H0C3 514 aa23.26■■□□□ 1.31
SDC1-205ENST00000447124 IGFLR1Q9H665 355 aa23.26■■□□□ 1.31
SDC1-205ENST00000447124 LIMCH1Q9UPQ0 1083 aa23.26■■□□□ 1.31
SDC1-205ENST00000447124 PCDHGC5Q9Y5F6 944 aa23.26■■□□□ 1.31
SDC1-205ENST00000447124 KIAA1671Q9BY89 1806 aa23.25■■□□□ 1.31
SDC1-205ENST00000447124 A0A0U1RQF3 1178 aa23.25■■□□□ 1.31
SDC1-205ENST00000447124 SLITRK3O94933 977 aa23.25■■□□□ 1.31
SDC1-205ENST00000447124 DNM2P50570 870 aa23.25■■□□□ 1.31
SDC1-205ENST00000447124 CTTNQ14247 550 aaKnown RBP23.25■■□□□ 1.31
SDC1-205ENST00000447124 SPOUT1Q5T280 376 aaKnown RBP23.25■■□□□ 1.31
SDC1-205ENST00000447124 RHPN2Q8IUC4 686 aa23.25■■□□□ 1.31
SDC1-205ENST00000447124 FAM178BQ8IXR5 827 aa23.25■■□□□ 1.31
SDC1-205ENST00000447124 CEP170P1Q96L14 293 aa23.25■■□□□ 1.31
SDC1-205ENST00000447124 DHX33Q9H6R0 707 aaKnown RBP23.25■■□□□ 1.31
SDC1-205ENST00000447124 BRMS1Q9HCU9 246 aa23.25■■□□□ 1.31
SDC1-205ENST00000447124 LINC01565O15544 149 aa23.24■■□□□ 1.31
SDC1-205ENST00000447124 NCK2O43639 380 aa23.24■■□□□ 1.31
SDC1-205ENST00000447124 BAG4O95429 457 aaKnown RBP23.24■■□□□ 1.31
SDC1-205ENST00000447124 ATF7P17544 494 aaPredicted RBP23.24■■□□□ 1.31
SDC1-205ENST00000447124 ADAM15Q13444 863 aa23.24■■□□□ 1.31
SDC1-205ENST00000447124 C8orf34Q49A92 452 aa23.24■■□□□ 1.31
SDC1-205ENST00000447124 SLFN12Q8IYM2 578 aa23.24■■□□□ 1.31
SDC1-205ENST00000447124 COLGALT1Q8NBJ5 622 aa23.24■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms