RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 ZHX2Q9Y6X8 837 aa22.71■■□□□ 1.23
CCDC88B-203ENST00000359902 A0A0U1RQG5 324 aaPredicted RBP22.71■■□□□ 1.23
CCDC88B-203ENST00000359902 DGKZQ13574 1117 aa22.71■■□□□ 1.23
CCDC88B-203ENST00000359902 TNIP1Q15025 636 aa22.71■■□□□ 1.23
CCDC88B-203ENST00000359902 MUM1L1Q5H9M0 696 aa22.71■■□□□ 1.23
CCDC88B-203ENST00000359902 CIAPIN1Q6FI81 312 aa22.71■■□□□ 1.23
CCDC88B-203ENST00000359902 VPS36Q86VN1 386 aa22.71■■□□□ 1.23
CCDC88B-203ENST00000359902 SYCP3Q8IZU3 236 aa22.71■■□□□ 1.23
CCDC88B-203ENST00000359902 LRRC57Q8N9N7 239 aa22.71■■□□□ 1.23
CCDC88B-203ENST00000359902 SLC38A10Q9HBR0 1119 aa22.71■■□□□ 1.23
CCDC88B-203ENST00000359902 MYH11P35749 1972 aa22.71■■□□□ 1.23
CCDC88B-203ENST00000359902 TRIM49P0CI25 452 aa22.7■■□□□ 1.22
CCDC88B-203ENST00000359902 TRIM49CP0CI26 452 aa22.7■■□□□ 1.22
CCDC88B-203ENST00000359902 PLS1Q14651 629 aa22.7■■□□□ 1.22
CCDC88B-203ENST00000359902 MAEAQ7L5Y9 396 aa22.7■■□□□ 1.22
CCDC88B-203ENST00000359902 SYTL5Q8TDW5 730 aaPredicted RBP22.7■■□□□ 1.22
CCDC88B-203ENST00000359902 DNAJC12Q9UKB3 198 aa22.7■■□□□ 1.22
CCDC88B-203ENST00000359902 ATP8B3O60423 1300 aa22.7■■□□□ 1.22
CCDC88B-203ENST00000359902 CCDC66A2RUB6 948 aa22.7■■□□□ 1.22
CCDC88B-203ENST00000359902 F8VZ95 297 aa22.7■■□□□ 1.22
CCDC88B-203ENST00000359902 EVI5O60447 810 aa22.7■■□□□ 1.22
CCDC88B-203ENST00000359902 SOX5P35711 763 aa22.7■■□□□ 1.22
CCDC88B-203ENST00000359902 NOP2P46087 812 aaKnown RBP22.7■■□□□ 1.22
CCDC88B-203ENST00000359902 IFI16Q16666 785 aaKnown RBP22.7■■□□□ 1.22
CCDC88B-203ENST00000359902 OLIG1Q8TAK6 271 aa22.7■■□□□ 1.22
CCDC88B-203ENST00000359902 DBR1Q9UK59 544 aaKnown RBP22.7■■□□□ 1.22
CCDC88B-203ENST00000359902 LOXHD1Q8IVV2 1947 aa22.7■■□□□ 1.22
CCDC88B-203ENST00000359902 EXOC3O60645 756 aa22.69■■□□□ 1.22
CCDC88B-203ENST00000359902 TNFRSF8P28908 595 aa22.69■■□□□ 1.22
CCDC88B-203ENST00000359902 LMAN1P49257 510 aa22.69■■□□□ 1.22
CCDC88B-203ENST00000359902 DRAP1Q14919 205 aaPredicted RBP22.69■■□□□ 1.22
CCDC88B-203ENST00000359902 RPS6KA1Q15418 735 aa22.69■■□□□ 1.22
CCDC88B-203ENST00000359902 SLC30A5Q8TAD4 765 aa22.69■■□□□ 1.22
CCDC88B-203ENST00000359902 HOMER2Q9NSB8 354 aa22.69■■□□□ 1.22
CCDC88B-203ENST00000359902 K7ENM7 598 aa22.69■■□□□ 1.22
CCDC88B-203ENST00000359902 AGPSO00116 658 aa22.69■■□□□ 1.22
CCDC88B-203ENST00000359902 RNF40O75150 1001 aa22.69■■□□□ 1.22
CCDC88B-203ENST00000359902 H2AFZP0C0S5 128 aa22.69■■□□□ 1.22
CCDC88B-203ENST00000359902 RARRES1P49788 294 aa22.69■■□□□ 1.22
CCDC88B-203ENST00000359902 MYBPC2Q14324 1141 aa22.69■■□□□ 1.22
CCDC88B-203ENST00000359902 H2AFVQ71UI9 128 aa22.69■■□□□ 1.22
CCDC88B-203ENST00000359902 SND1Q7KZF4 910 aaKnown RBP eCLIP22.69■■□□□ 1.22
CCDC88B-203ENST00000359902 TPCN2Q8NHX9 752 aa22.69■■□□□ 1.22
CCDC88B-203ENST00000359902 TAAR1Q96RJ0 339 aa22.69■■□□□ 1.22
CCDC88B-203ENST00000359902 INTS2Q9H0H0 1204 aaKnown RBP22.69■■□□□ 1.22
CCDC88B-203ENST00000359902 LARSQ9P2J5 1176 aaKnown RBP22.69■■□□□ 1.22
CCDC88B-203ENST00000359902 INTUQ9ULD6 942 aa22.69■■□□□ 1.22
CCDC88B-203ENST00000359902 CES2O00748 559 aa22.68■■□□□ 1.22
CCDC88B-203ENST00000359902 EGFRP00533 1210 aa22.68■■□□□ 1.22
CCDC88B-203ENST00000359902 GGCXP38435 758 aa22.68■■□□□ 1.22
CCDC88B-203ENST00000359902 QARSP47897 775 aaKnown RBP22.68■■□□□ 1.22
CCDC88B-203ENST00000359902 BFSP1Q12934 665 aa22.68■■□□□ 1.22
CCDC88B-203ENST00000359902 MTMR1Q13613 665 aa22.68■■□□□ 1.22
CCDC88B-203ENST00000359902 RDH13Q8NBN7 331 aa22.68■■□□□ 1.22
CCDC88B-203ENST00000359902 U2AF1L4Q8WU68 220 aaKnown RBP22.68■■□□□ 1.22
CCDC88B-203ENST00000359902 GPR88Q9GZN0 384 aa22.68■■□□□ 1.22
CCDC88B-203ENST00000359902 GOLPH3Q9H4A6 298 aa22.68■■□□□ 1.22
CCDC88B-203ENST00000359902 SAMM50Q9Y512 469 aa22.68■■□□□ 1.22
CCDC88B-203ENST00000359902 KIF4AO95239 1232 aa22.68■■□□□ 1.22
CCDC88B-203ENST00000359902 MAPTP10636 758 aaKnown RBP22.68■■□□□ 1.22
CCDC88B-203ENST00000359902 SPP2Q13103 211 aa22.68■■□□□ 1.22
CCDC88B-203ENST00000359902 LNX1Q8TBB1 728 aaPredicted RBP22.68■■□□□ 1.22
CCDC88B-203ENST00000359902 TAF4BQ92750 862 aa22.68■■□□□ 1.22
CCDC88B-203ENST00000359902 MAP3K20Q9NYL2 800 aaKnown RBP22.68■■□□□ 1.22
CCDC88B-203ENST00000359902 A0A0A6YYK5 440 aaPredicted RBP22.67■■□□□ 1.22
CCDC88B-203ENST00000359902 GLI1P08151 1106 aa22.67■■□□□ 1.22
CCDC88B-203ENST00000359902 EPHB4P54760 987 aa22.67■■□□□ 1.22
CCDC88B-203ENST00000359902 RNASE9P60153 205 aaKnown RBP22.67■■□□□ 1.22
CCDC88B-203ENST00000359902 RPS6P62753 249 aaKnown RBP22.67■■□□□ 1.22
CCDC88B-203ENST00000359902 USP38Q8NB14 1042 aa22.67■■□□□ 1.22
CCDC88B-203ENST00000359902 RIN2Q8WYP3 895 aaPredicted RBP22.67■■□□□ 1.22
CCDC88B-203ENST00000359902 RGS17Q9UGC6 210 aaPredicted RBP22.67■■□□□ 1.22
CCDC88B-203ENST00000359902 KCNK3O14649 394 aa22.66■■□□□ 1.22
CCDC88B-203ENST00000359902 LYPLA2O95372 231 aa22.66■■□□□ 1.22
CCDC88B-203ENST00000359902 EIF2AK2P19525 551 aaKnown RBP22.66■■□□□ 1.22
CCDC88B-203ENST00000359902 MYL7Q01449 175 aa22.66■■□□□ 1.22
CCDC88B-203ENST00000359902 SYT11Q9BT88 431 aa22.66■■□□□ 1.22
CCDC88B-203ENST00000359902 GDF3Q9NR23 364 aa22.66■■□□□ 1.22
CCDC88B-203ENST00000359902 TBC1D22BQ9NU19 505 aa22.66■■□□□ 1.22
CCDC88B-203ENST00000359902 APEX2Q9UBZ4 518 aa22.66■■□□□ 1.22
CCDC88B-203ENST00000359902 CTNND1O60716 968 aaKnown RBP22.66■■□□□ 1.22
CCDC88B-203ENST00000359902 PLS3P13797 630 aa22.66■■□□□ 1.22
CCDC88B-203ENST00000359902 ALCAMQ13740 583 aa22.66■■□□□ 1.22
CCDC88B-203ENST00000359902 PGM5Q15124 567 aa22.66■■□□□ 1.22
CCDC88B-203ENST00000359902 EMBQ6PCB8 327 aa22.66■■□□□ 1.22
CCDC88B-203ENST00000359902 SLFN11Q7Z7L1 901 aa22.66■■□□□ 1.22
CCDC88B-203ENST00000359902 LMO3Q8TAP4 145 aa22.66■■□□□ 1.22
CCDC88B-203ENST00000359902 TMEM206Q9H813 350 aa22.66■■□□□ 1.22
CCDC88B-203ENST00000359902 FAM204AQ9H8W3 233 aa22.66■■□□□ 1.22
CCDC88B-203ENST00000359902 PIM2Q9P1W9 311 aa22.66■■□□□ 1.22
CCDC88B-203ENST00000359902 TMEM59LQ9UK28 342 aa22.66■■□□□ 1.22
CCDC88B-203ENST00000359902 PPP1R9AQ9ULJ8 1098 aa22.66■■□□□ 1.22
CCDC88B-203ENST00000359902 TISP43B9A030 160 aa22.65■■□□□ 1.22
CCDC88B-203ENST00000359902 GALCP54803 685 aa22.65■■□□□ 1.22
CCDC88B-203ENST00000359902 ZNF280AP59817 542 aaPredicted RBP22.65■■□□□ 1.22
CCDC88B-203ENST00000359902 FER1L6Q2WGJ9 1857 aa22.65■■□□□ 1.22
CCDC88B-203ENST00000359902 POTEAQ6S8J7 498 aa22.65■■□□□ 1.22
CCDC88B-203ENST00000359902 GLYCTKQ8IVS8 523 aa22.65■■□□□ 1.22
CCDC88B-203ENST00000359902 IFT20Q8IY31 132 aa22.65■■□□□ 1.22
CCDC88B-203ENST00000359902 SAMD3Q8N6K7 520 aa22.65■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms