RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 CD58P19256 250 aa20.89■□□□□ 0.94
CCDC88B-202ENST00000356786 ATP2B4P23634 1241 aa20.89■□□□□ 0.94
CCDC88B-202ENST00000356786 HSPA9P38646 679 aaKnown RBP20.89■□□□□ 0.94
CCDC88B-202ENST00000356786 EXOSC10Q01780 885 aaKnown RBP20.89■□□□□ 0.94
CCDC88B-202ENST00000356786 CYFIP2Q96F07 1278 aa20.89■□□□□ 0.94
CCDC88B-202ENST00000356786 NXF1Q9UBU9 619 aaKnown RBP20.89■□□□□ 0.94
CCDC88B-202ENST00000356786 SERPINB13Q9UIV8 391 aa20.89■□□□□ 0.94
CCDC88B-202ENST00000356786 CHN1P15882 459 aa20.89■□□□□ 0.93
CCDC88B-202ENST00000356786 GLYCTKQ8IVS8 523 aa20.89■□□□□ 0.93
CCDC88B-202ENST00000356786 ENAHQ8N8S7 591 aaPredicted RBP20.89■□□□□ 0.93
CCDC88B-202ENST00000356786 EDEM3Q9BZQ6 932 aa20.89■□□□□ 0.93
CCDC88B-202ENST00000356786 AGPAT5Q9NUQ2 364 aa20.89■□□□□ 0.93
CCDC88B-202ENST00000356786 SMARCAL1Q9NZC9 954 aa20.89■□□□□ 0.93
CCDC88B-202ENST00000356786 ADAM22Q9P0K1 906 aa20.89■□□□□ 0.93
CCDC88B-202ENST00000356786 FGFR4P22455 802 aa20.89■□□□□ 0.93
CCDC88B-202ENST00000356786 ERFP50548 548 aa20.89■□□□□ 0.93
CCDC88B-202ENST00000356786 KLC1Q07866 573 aa20.89■□□□□ 0.93
CCDC88B-202ENST00000356786 MKRN3Q13064 507 aaKnown RBP20.89■□□□□ 0.93
CCDC88B-202ENST00000356786 ATP6V0A1Q93050 837 aa20.89■□□□□ 0.93
CCDC88B-202ENST00000356786 KRT82Q9NSB4 513 aa20.89■□□□□ 0.93
CCDC88B-202ENST00000356786 RBM12Q9NTZ6 932 aaKnown RBP20.89■□□□□ 0.93
CCDC88B-202ENST00000356786 MID2Q9UJV3 735 aa20.89■□□□□ 0.93
CCDC88B-202ENST00000356786 SPATA31A3Q5VYP0 1347 aa20.89■□□□□ 0.93
CCDC88B-202ENST00000356786 KRT38O76015 456 aa20.88■□□□□ 0.93
CCDC88B-202ENST00000356786 FCER1AP12319 257 aa20.88■□□□□ 0.93
CCDC88B-202ENST00000356786 CNGA1P29973 690 aa20.88■□□□□ 0.93
CCDC88B-202ENST00000356786 COASYQ13057 564 aa20.88■□□□□ 0.93
CCDC88B-202ENST00000356786 RNPC3Q96LT9 517 aaKnown RBP20.88■□□□□ 0.93
CCDC88B-202ENST00000356786 XPO6Q96QU8 1125 aaKnown RBP20.88■□□□□ 0.93
CCDC88B-202ENST00000356786 SLC40A1Q9NP59 571 aa20.88■□□□□ 0.93
CCDC88B-202ENST00000356786 CTTNQ14247 550 aaKnown RBP20.88■□□□□ 0.93
CCDC88B-202ENST00000356786 ANKRD40Q6AI12 368 aa20.88■□□□□ 0.93
CCDC88B-202ENST00000356786 ANO5Q75V66 913 aa20.88■□□□□ 0.93
CCDC88B-202ENST00000356786 REXO1L1PQ8IX06 675 aa20.88■□□□□ 0.93
CCDC88B-202ENST00000356786 LBHD1Q9BQE6 289 aaPredicted RBP20.88■□□□□ 0.93
CCDC88B-202ENST00000356786 FAM107AO95990 144 aa20.88■□□□□ 0.93
CCDC88B-202ENST00000356786 HNRNPCP07910 306 aaKnown RBP eCLIP20.88■□□□□ 0.93
CCDC88B-202ENST00000356786 ZNF746Q6NUN9 644 aaPredicted RBP20.88■□□□□ 0.93
CCDC88B-202ENST00000356786 TTLL11Q8NHH1 800 aa20.88■□□□□ 0.93
CCDC88B-202ENST00000356786 CEP170P1Q96L14 293 aa20.88■□□□□ 0.93
CCDC88B-202ENST00000356786 CPVLQ9H3G5 476 aa20.88■□□□□ 0.93
CCDC88B-202ENST00000356786 SEPT9Q9UHD8 586 aaPredicted RBP20.88■□□□□ 0.93
CCDC88B-202ENST00000356786 PNMA2Q9UL42 364 aa20.88■□□□□ 0.93
CCDC88B-202ENST00000356786 ORC6Q9Y5N6 252 aa20.88■□□□□ 0.93
CCDC88B-202ENST00000356786 DYNC1LI1Q9Y6G9 523 aaKnown RBP20.88■□□□□ 0.93
CCDC88B-202ENST00000356786 LRRC7Q96NW7 1537 aa20.88■□□□□ 0.93
CCDC88B-202ENST00000356786 E9PMD0 336 aa20.88■□□□□ 0.93
CCDC88B-202ENST00000356786 STXBP3O00186 592 aa20.88■□□□□ 0.93
CCDC88B-202ENST00000356786 INPP1P49441 399 aa20.88■□□□□ 0.93
CCDC88B-202ENST00000356786 CARSP49589 748 aaKnown RBP20.88■□□□□ 0.93
CCDC88B-202ENST00000356786 TFAMQ00059 246 aaKnown RBP20.88■□□□□ 0.93
CCDC88B-202ENST00000356786 RABGAP1LQ5R372 815 aa20.88■□□□□ 0.93
CCDC88B-202ENST00000356786 LONP2Q86WA8 852 aa20.88■□□□□ 0.93
CCDC88B-202ENST00000356786 TRPC5Q9UL62 973 aaPredicted RBP20.88■□□□□ 0.93
CCDC88B-202ENST00000356786 USP15Q9Y4E8 981 aaPredicted RBP20.88■□□□□ 0.93
CCDC88B-202ENST00000356786 ARHGAP10A1A4S6 786 aa20.87■□□□□ 0.93
CCDC88B-202ENST00000356786 ATP2C1P98194 919 aaPredicted RBP20.87■□□□□ 0.93
CCDC88B-202ENST00000356786 DRAP1Q14919 205 aaPredicted RBP20.87■□□□□ 0.93
CCDC88B-202ENST00000356786 LARGE2Q8N3Y3 721 aa20.87■□□□□ 0.93
CCDC88B-202ENST00000356786 DTX3LQ8TDB6 740 aa20.87■□□□□ 0.93
CCDC88B-202ENST00000356786 PNKPQ96T60 521 aa20.87■□□□□ 0.93
CCDC88B-202ENST00000356786 DNAJC6O75061 913 aa20.87■□□□□ 0.93
CCDC88B-202ENST00000356786 AGTP01019 485 aa20.87■□□□□ 0.93
CCDC88B-202ENST00000356786 FTLP02792 175 aaPredicted RBP20.87■□□□□ 0.93
CCDC88B-202ENST00000356786 DHX34Q14147 1143 aaKnown RBP20.87■□□□□ 0.93
CCDC88B-202ENST00000356786 PRPSAP1Q14558 356 aa20.87■□□□□ 0.93
CCDC88B-202ENST00000356786 SGMS1Q86VZ5 419 aa20.87■□□□□ 0.93
CCDC88B-202ENST00000356786 SLC26A7Q8TE54 656 aa20.87■□□□□ 0.93
CCDC88B-202ENST00000356786 SLC7A3Q8WY07 619 aa20.87■□□□□ 0.93
CCDC88B-202ENST00000356786 ITIH6Q6UXX5 1313 aa20.87■□□□□ 0.93
CCDC88B-202ENST00000356786 TTI1O43156 1089 aa20.87■□□□□ 0.93
CCDC88B-202ENST00000356786 PRPSAP2O60256 369 aa20.87■□□□□ 0.93
CCDC88B-202ENST00000356786 GCLMP48507 274 aa20.87■□□□□ 0.93
CCDC88B-202ENST00000356786 NCAPHQ15003 741 aa20.87■□□□□ 0.93
CCDC88B-202ENST00000356786 LRRC31Q6UY01 552 aa20.87■□□□□ 0.93
CCDC88B-202ENST00000356786 ANO3Q9BYT9 981 aa20.87■□□□□ 0.93
CCDC88B-202ENST00000356786 ZWILCHQ9H900 591 aa20.87■□□□□ 0.93
CCDC88B-202ENST00000356786 OCRLQ01968 901 aa20.87■□□□□ 0.93
CCDC88B-202ENST00000356786 PIGOQ8TEQ8 1089 aa20.87■□□□□ 0.93
CCDC88B-202ENST00000356786 RFFLQ8WZ73 363 aa20.87■□□□□ 0.93
CCDC88B-202ENST00000356786 RAD54LQ92698 747 aa20.87■□□□□ 0.93
CCDC88B-202ENST00000356786 RNF25Q96BH1 459 aaPredicted RBP20.87■□□□□ 0.93
CCDC88B-202ENST00000356786 KANSL2Q9H9L4 492 aa20.87■□□□□ 0.93
CCDC88B-202ENST00000356786 PSMD14O00487 310 aa20.86■□□□□ 0.93
CCDC88B-202ENST00000356786 RCAN1P53805 252 aa20.86■□□□□ 0.93
CCDC88B-202ENST00000356786 KLHL38Q2WGJ6 581 aa20.86■□□□□ 0.93
CCDC88B-202ENST00000356786 RAB44Q7Z6P3 723 aaPredicted RBP20.86■□□□□ 0.93
CCDC88B-202ENST00000356786 FAF2Q96CS3 445 aa20.86■□□□□ 0.93
CCDC88B-202ENST00000356786 RBM41Q96IZ5 413 aaKnown RBP20.86■□□□□ 0.93
CCDC88B-202ENST00000356786 CYP4F11Q9HBI6 524 aa20.86■□□□□ 0.93
CCDC88B-202ENST00000356786 WARS2Q9UGM6 360 aaKnown RBP20.86■□□□□ 0.93
CCDC88B-202ENST00000356786 ZNF711Q9Y462 761 aa20.86■□□□□ 0.93
CCDC88B-202ENST00000356786 RFX7Q2KHR2 1363 aa20.86■□□□□ 0.93
CCDC88B-202ENST00000356786 LOC102724428A0A0B4J2F2 783 aa20.86■□□□□ 0.93
CCDC88B-202ENST00000356786 CYP27B1O15528 508 aa20.86■□□□□ 0.93
CCDC88B-202ENST00000356786 GYPCP04921 128 aa20.86■□□□□ 0.93
CCDC88B-202ENST00000356786 GUCY1A2P33402 732 aa20.86■□□□□ 0.93
CCDC88B-202ENST00000356786 ARL4AP40617 200 aa20.86■□□□□ 0.93
CCDC88B-202ENST00000356786 SIK1P57059 783 aa20.86■□□□□ 0.93
CCDC88B-202ENST00000356786 TBC1D9BQ66K14 1250 aa20.86■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms