RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 KSR1Q8IVT5 923 aa17.68■□□□□ 0.42
CLN3-201ENST00000333496 ZNF710Q8N1W2 664 aa17.68■□□□□ 0.42
CLN3-201ENST00000333496 SP7Q8TDD2 431 aaPredicted RBP17.68■□□□□ 0.42
CLN3-201ENST00000333496 PIGOQ8TEQ8 1089 aa17.68■□□□□ 0.42
CLN3-201ENST00000333496 TUFT1Q9NNX1 390 aa17.68■□□□□ 0.42
CLN3-201ENST00000333496 BMP2KQ9NSY1 1161 aaPredicted RBP17.68■□□□□ 0.42
CLN3-201ENST00000333496 SUCLA2Q9P2R7 463 aaPredicted RBP17.68■□□□□ 0.42
CLN3-201ENST00000333496 LINC01553A4QN01 128 aa17.67■□□□□ 0.42
CLN3-201ENST00000333496 EPOPA6NHQ4 379 aa17.67■□□□□ 0.42
CLN3-201ENST00000333496 GPR182O15218 404 aa17.67■□□□□ 0.42
CLN3-201ENST00000333496 DNM2P50570 870 aa17.67■□□□□ 0.42
CLN3-201ENST00000333496 POLGP54098 1239 aaPredicted RBP17.67■□□□□ 0.42
CLN3-201ENST00000333496 ADGRE1Q14246 886 aa17.67■□□□□ 0.42
CLN3-201ENST00000333496 RHPN2Q8IUC4 686 aa17.67■□□□□ 0.42
CLN3-201ENST00000333496 SLC7A3Q8WY07 619 aa17.67■□□□□ 0.42
CLN3-201ENST00000333496 JPH2Q9BR39 696 aaPredicted RBP17.67■□□□□ 0.42
CLN3-201ENST00000333496 POLR3CQ9BUI4 534 aaPredicted RBP17.67■□□□□ 0.42
CLN3-201ENST00000333496 RC3H2Q9HBD1 1191 aaKnown RBP17.67■□□□□ 0.42
CLN3-201ENST00000333496 ANKEF1Q9NU02 776 aa17.67■□□□□ 0.42
CLN3-201ENST00000333496 A0A087WZ62 844 aa17.66■□□□□ 0.42
CLN3-201ENST00000333496 CSDE1O75534 798 aaKnown RBP17.66■□□□□ 0.42
CLN3-201ENST00000333496 DARSP14868 501 aaKnown RBP17.66■□□□□ 0.42
CLN3-201ENST00000333496 RPA1P27694 616 aa17.66■□□□□ 0.42
CLN3-201ENST00000333496 RFC5P40937 340 aa17.66■□□□□ 0.42
CLN3-201ENST00000333496 RARRES1P49788 294 aa17.66■□□□□ 0.42
CLN3-201ENST00000333496 EMC2Q15006 297 aa17.66■□□□□ 0.42
CLN3-201ENST00000333496 IGSF22Q8N9C0 903 aa17.66■□□□□ 0.42
CLN3-201ENST00000333496 NLRP7Q8WX94 980 aa17.66■□□□□ 0.42
CLN3-201ENST00000333496 TMEM143Q96AN5 459 aa17.66■□□□□ 0.42
CLN3-201ENST00000333496 ADAM2Q99965 735 aa17.66■□□□□ 0.42
CLN3-201ENST00000333496 FDXACB1Q9BRP7 624 aaPredicted RBP17.66■□□□□ 0.42
CLN3-201ENST00000333496 XPNPEP1Q9NQW7 623 aa17.66■□□□□ 0.42
CLN3-201ENST00000333496 FOXD4L1Q9NU39 408 aa17.66■□□□□ 0.42
CLN3-201ENST00000333496 RFXAPO00287 272 aa17.65■□□□□ 0.42
CLN3-201ENST00000333496 LAD1O00515 517 aa17.65■□□□□ 0.42
CLN3-201ENST00000333496 XRCC6P12956 609 aaKnown RBP eCLIP17.65■□□□□ 0.42
CLN3-201ENST00000333496 FOSL2P15408 326 aa17.65■□□□□ 0.42
CLN3-201ENST00000333496 SYT1P21579 422 aa17.65■□□□□ 0.42
CLN3-201ENST00000333496 FGFR4P22455 802 aa17.65■□□□□ 0.42
CLN3-201ENST00000333496 ATP2C1P98194 919 aaPredicted RBP17.65■□□□□ 0.42
CLN3-201ENST00000333496 CDC42EP1Q00587 391 aa17.65■□□□□ 0.42
CLN3-201ENST00000333496 PDIA5Q14554 519 aa17.65■□□□□ 0.42
CLN3-201ENST00000333496 DSC3Q14574 896 aa17.65■□□□□ 0.42
CLN3-201ENST00000333496 ECM1Q16610 540 aa17.65■□□□□ 0.42
CLN3-201ENST00000333496 ODR4Q5SWX8 454 aa17.65■□□□□ 0.42
CLN3-201ENST00000333496 YME1L1Q96TA2 773 aa17.65■□□□□ 0.42
CLN3-201ENST00000333496 RGS18Q9NS28 235 aa17.65■□□□□ 0.42
CLN3-201ENST00000333496 MYH15Q9Y2K3 1946 aa17.65■□□□□ 0.42
CLN3-201ENST00000333496 VPS37CA5D8V6 355 aaPredicted RBP17.65■□□□□ 0.42
CLN3-201ENST00000333496 PRPHP41219 470 aa17.65■□□□□ 0.42
CLN3-201ENST00000333496 POTEGQ6S5H5 508 aa17.65■□□□□ 0.42
CLN3-201ENST00000333496 FERMT3Q86UX7 667 aa17.65■□□□□ 0.42
CLN3-201ENST00000333496 ZNF410Q86VK4 478 aa17.65■□□□□ 0.42
CLN3-201ENST00000333496 EXOC8Q8IYI6 725 aa17.65■□□□□ 0.42
CLN3-201ENST00000333496 PRPF31Q8WWY3 499 aaKnown RBP17.65■□□□□ 0.42
CLN3-201ENST00000333496 ARNTL2Q8WYA1 636 aa17.65■□□□□ 0.42
CLN3-201ENST00000333496 ZNF689Q96CS4 500 aaPredicted RBP17.65■□□□□ 0.42
CLN3-201ENST00000333496 SCLT1Q96NL6 688 aa17.65■□□□□ 0.42
CLN3-201ENST00000333496 IFT122Q9HBG6 1241 aa17.65■□□□□ 0.42
CLN3-201ENST00000333496 LRWD1Q9UFC0 647 aa17.65■□□□□ 0.42
CLN3-201ENST00000333496 COL4A3BPQ9Y5P4 624 aa17.65■□□□□ 0.42
CLN3-201ENST00000333496 SPTBN5Q9NRC6 3674 aaKnown RBP17.64■□□□□ 0.41
CLN3-201ENST00000333496 C9IYK1 514 aa17.64■□□□□ 0.41
CLN3-201ENST00000333496 GAS2O43903 313 aaKnown RBP17.64■□□□□ 0.41
CLN3-201ENST00000333496 DGKIO75912 1065 aa17.64■□□□□ 0.41
CLN3-201ENST00000333496 PDCP20941 246 aa17.64■□□□□ 0.41
CLN3-201ENST00000333496 ERVK-21P61565 698 aa17.64■□□□□ 0.41
CLN3-201ENST00000333496 FAM43BQ6ZT52 329 aaPredicted RBP17.64■□□□□ 0.41
CLN3-201ENST00000333496 ERMNQ8TAM6 284 aa17.64■□□□□ 0.41
CLN3-201ENST00000333496 GAS2L1Q99501 681 aaPredicted RBP17.64■□□□□ 0.41
CLN3-201ENST00000333496 MTRQ99707 1265 aa17.64■□□□□ 0.41
CLN3-201ENST00000333496 GCOM2Q9BZD3 368 aaPredicted RBP17.64■□□□□ 0.41
CLN3-201ENST00000333496 PRRC2BQ5JSZ5 2229 aaKnown RBP17.63■□□□□ 0.41
CLN3-201ENST00000333496 PP2D1A8MPX8 630 aa17.63■□□□□ 0.41
CLN3-201ENST00000333496 DGAT1O75907 488 aa17.63■□□□□ 0.41
CLN3-201ENST00000333496 CDC25AP30304 524 aa17.63■□□□□ 0.41
CLN3-201ENST00000333496 SARSP49591 514 aaKnown RBP17.63■□□□□ 0.41
CLN3-201ENST00000333496 LAMTOR4Q0VGL1 99 aa17.63■□□□□ 0.41
CLN3-201ENST00000333496 BRAPQ7Z569 592 aa17.63■□□□□ 0.41
CLN3-201ENST00000333496 NPAS4Q8IUM7 802 aa17.63■□□□□ 0.41
CLN3-201ENST00000333496 PSPC1Q8WXF1 523 aaKnown RBP17.63■□□□□ 0.41
CLN3-201ENST00000333496 NLRP4Q96MN2 994 aa17.63■□□□□ 0.41
CLN3-201ENST00000333496 NACC1Q96RE7 527 aa17.63■□□□□ 0.41
CLN3-201ENST00000333496 TGS1Q96RS0 853 aaKnown RBP17.63■□□□□ 0.41
CLN3-201ENST00000333496 DBR1Q9UK59 544 aaKnown RBP17.63■□□□□ 0.41
CLN3-201ENST00000333496 ATG2AQ2TAZ0 1938 aa17.63■□□□□ 0.41
CLN3-201ENST00000333496 DENND3A2RUS2 1198 aa17.62■□□□□ 0.41
CLN3-201ENST00000333496 LPXNO60711 386 aa17.62■□□□□ 0.41
CLN3-201ENST00000333496 LINC00271P0C7V0 271 aa17.62■□□□□ 0.41
CLN3-201ENST00000333496 MUTP22033 750 aa17.62■□□□□ 0.41
CLN3-201ENST00000333496 CCT6AP40227 531 aaKnown RBP17.62■□□□□ 0.41
CLN3-201ENST00000333496 HAUS3Q68CZ6 603 aa17.62■□□□□ 0.41
CLN3-201ENST00000333496 DTHD1Q6ZMT9 781 aa17.62■□□□□ 0.41
CLN3-201ENST00000333496 SLC24A5Q71RS6 500 aa17.62■□□□□ 0.41
CLN3-201ENST00000333496 MAFAQ8NHW3 353 aaPredicted RBP17.62■□□□□ 0.41
CLN3-201ENST00000333496 TCP11Q8WWU5 503 aa17.62■□□□□ 0.41
CLN3-201ENST00000333496 C17orf80Q9BSJ5 609 aa17.62■□□□□ 0.41
CLN3-201ENST00000333496 MMTAG2Q9BU76 263 aaKnown RBP17.62■□□□□ 0.41
CLN3-201ENST00000333496 ATP6V0A4Q9HBG4 840 aa17.62■□□□□ 0.41
CLN3-201ENST00000333496 C1orf112Q9NSG2 853 aa17.62■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms