RNA–Protein interactions for RNA: ENST00000296043.6

SHROOM3-201, Transcript of shroom family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHROOM3, Length 11,020 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-201ENST00000296043 RNPC3Q96LT9 517 aaKnown RBP12.51□□□□□ -0.41
SHROOM3-201ENST00000296043 EXOSC4Q9NPD3 245 aaKnown RBP12.51□□□□□ -0.41
SHROOM3-201ENST00000296043 SYNGAP1Q96PV0 1343 aa12.51□□□□□ -0.41
SHROOM3-201ENST00000296043 SYNDIG1LA6NDD5 238 aa12.51□□□□□ -0.41
SHROOM3-201ENST00000296043 DISC1Q9NRI5 854 aa12.51□□□□□ -0.41
SHROOM3-201ENST00000296043 PNMA2Q9UL42 364 aa12.51□□□□□ -0.41
SHROOM3-201ENST00000296043 TCN1P20061 433 aaPredicted RBP12.51□□□□□ -0.41
SHROOM3-201ENST00000296043 NR2F2P24468 414 aa12.51□□□□□ -0.41
SHROOM3-201ENST00000296043 LRRC41Q15345 812 aa12.51□□□□□ -0.41
SHROOM3-201ENST00000296043 AFAP1Q8N556 730 aa12.51□□□□□ -0.41
SHROOM3-201ENST00000296043 DTNAQ9Y4J8 743 aa12.51□□□□□ -0.41
SHROOM3-201ENST00000296043 ZNF839A8K0R7 811 aa12.5□□□□□ -0.41
SHROOM3-201ENST00000296043 SFSWAPQ12872 951 aaKnown RBP12.5□□□□□ -0.41
SHROOM3-201ENST00000296043 SARM1Q6SZW1 724 aa12.5□□□□□ -0.41
SHROOM3-201ENST00000296043 MICU2Q8IYU8 434 aa12.5□□□□□ -0.41
SHROOM3-201ENST00000296043 ZSCAN32Q9NX65 697 aa12.5□□□□□ -0.41
SHROOM3-201ENST00000296043 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.5□□□□□ -0.41
SHROOM3-201ENST00000296043 NINQ8N4C6 2090 aa12.5□□□□□ -0.41
SHROOM3-201ENST00000296043 IPO5O00410 1097 aaKnown RBP12.5□□□□□ -0.41
SHROOM3-201ENST00000296043 FAM107AO95990 144 aa12.5□□□□□ -0.41
SHROOM3-201ENST00000296043 BLMP54132 1417 aaPredicted RBP12.5□□□□□ -0.41
SHROOM3-201ENST00000296043 GPS1Q13098 491 aa12.5□□□□□ -0.41
SHROOM3-201ENST00000296043 SLC17A8Q8NDX2 589 aa12.5□□□□□ -0.41
SHROOM3-201ENST00000296043 PDS5BQ9NTI5 1447 aa12.5□□□□□ -0.41
SHROOM3-201ENST00000296043 GOLGA8CPA6NN73 597 aa12.5□□□□□ -0.41
SHROOM3-201ENST00000296043 GAS7O60861 476 aa12.5□□□□□ -0.41
SHROOM3-201ENST00000296043 GRIN1Q05586 938 aa12.5□□□□□ -0.41
SHROOM3-201ENST00000296043 SLC39A6Q13433 755 aa12.5□□□□□ -0.41
SHROOM3-201ENST00000296043 KCNB1Q14721 858 aa12.5□□□□□ -0.41
SHROOM3-201ENST00000296043 OASLQ15646 514 aaKnown RBP12.5□□□□□ -0.41
SHROOM3-201ENST00000296043 PRPF39Q86UA1 669 aaKnown RBP12.5□□□□□ -0.41
SHROOM3-201ENST00000296043 DHX40Q8IX18 779 aaKnown RBP12.5□□□□□ -0.41
SHROOM3-201ENST00000296043 MAP3K19Q56UN5 1328 aa12.5□□□□□ -0.41
SHROOM3-201ENST00000296043 RNF123Q5XPI4 1314 aa12.5□□□□□ -0.41
SHROOM3-201ENST00000296043 C16orf96A6NNT2 1141 aa12.5□□□□□ -0.41
SHROOM3-201ENST00000296043 MYO1GB0I1T2 1018 aa12.5□□□□□ -0.41
SHROOM3-201ENST00000296043 HNRNPRO43390 633 aaKnown RBP12.5□□□□□ -0.41
SHROOM3-201ENST00000296043 SEMA3DO95025 777 aa12.5□□□□□ -0.41
SHROOM3-201ENST00000296043 MRPL1Q9BYD6 325 aaKnown RBP12.5□□□□□ -0.41
SHROOM3-201ENST00000296043 MID2Q9UJV3 735 aa12.5□□□□□ -0.41
SHROOM3-201ENST00000296043 PNMA6EA0A0J9YXQ4 647 aa12.5□□□□□ -0.41
SHROOM3-201ENST00000296043 AIM2O14862 343 aa12.5□□□□□ -0.41
SHROOM3-201ENST00000296043 CCDC22O60826 627 aa12.5□□□□□ -0.41
SHROOM3-201ENST00000296043 ZNF211Q13398 564 aaPredicted RBP12.5□□□□□ -0.41
SHROOM3-201ENST00000296043 BNIPLQ7Z465 357 aa12.5□□□□□ -0.41
SHROOM3-201ENST00000296043 BLOC1S6Q9UL45 172 aa12.5□□□□□ -0.41
SHROOM3-201ENST00000296043 KLHL18O94889 574 aa12.5□□□□□ -0.41
SHROOM3-201ENST00000296043 TMED8Q6PL24 325 aaPredicted RBP12.5□□□□□ -0.41
SHROOM3-201ENST00000296043 FAM178BQ8IXR5 827 aa12.5□□□□□ -0.41
SHROOM3-201ENST00000296043 CCNYQ8ND76 341 aa12.5□□□□□ -0.41
SHROOM3-201ENST00000296043 LRRC1Q9BTT6 524 aa12.5□□□□□ -0.41
SHROOM3-201ENST00000296043 SUGCTQ9HAC7 445 aa12.5□□□□□ -0.41
SHROOM3-201ENST00000296043 ZNF654Q8IZM8 581 aa12.5□□□□□ -0.41
SHROOM3-201ENST00000296043 ZC3H15Q8WU90 426 aaKnown RBP12.5□□□□□ -0.41
SHROOM3-201ENST00000296043 VPS11Q9H270 941 aa12.5□□□□□ -0.41
SHROOM3-201ENST00000296043 KRT6AP02538 564 aa12.5□□□□□ -0.41
SHROOM3-201ENST00000296043 KRT6BP04259 564 aa12.5□□□□□ -0.41
SHROOM3-201ENST00000296043 KRT6CP48668 564 aa12.5□□□□□ -0.41
SHROOM3-201ENST00000296043 TRIM63Q969Q1 353 aa12.5□□□□□ -0.41
SHROOM3-201ENST00000296043 CNDP1Q96KN2 507 aa12.5□□□□□ -0.41
SHROOM3-201ENST00000296043 DBNDD2Q9BQY9 259 aa12.5□□□□□ -0.41
SHROOM3-201ENST00000296043 CCT3P49368 545 aaKnown RBP12.49□□□□□ -0.41
SHROOM3-201ENST00000296043 ARPP19P56211 112 aa12.49□□□□□ -0.41
SHROOM3-201ENST00000296043 PPM1NQ8N819 430 aa12.49□□□□□ -0.41
SHROOM3-201ENST00000296043 ADAM33Q9BZ11 813 aa12.49□□□□□ -0.41
SHROOM3-201ENST00000296043 RIMS2Q9UQ26 1411 aa12.49□□□□□ -0.41
SHROOM3-201ENST00000296043 HSPH1Q92598 858 aa12.49□□□□□ -0.41
SHROOM3-201ENST00000296043 MMS19Q96T76 1030 aa12.49□□□□□ -0.41
SHROOM3-201ENST00000296043 POLR3EQ9NVU0 708 aa12.49□□□□□ -0.41
SHROOM3-201ENST00000296043 LCMT1Q9UIC8 334 aa12.49□□□□□ -0.41
SHROOM3-201ENST00000296043 ZBED1O96006 694 aa12.49□□□□□ -0.41
SHROOM3-201ENST00000296043 LDHBP07195 334 aaKnown RBP12.49□□□□□ -0.41
SHROOM3-201ENST00000296043 DNAJC24Q6P3W2 148 aa12.49□□□□□ -0.41
SHROOM3-201ENST00000296043 TSHZ1Q6ZSZ6 1077 aa12.49□□□□□ -0.41
SHROOM3-201ENST00000296043 TTC25Q96NG3 672 aa12.49□□□□□ -0.41
SHROOM3-201ENST00000296043 ZCWPW1Q9H0M4 648 aa12.49□□□□□ -0.41
SHROOM3-201ENST00000296043 COL4A3BPQ9Y5P4 624 aa12.49□□□□□ -0.41
SHROOM3-201ENST00000296043 BTBD18B2RXH4 712 aa12.49□□□□□ -0.41
SHROOM3-201ENST00000296043 TSSK1BQ9BXA7 367 aa12.49□□□□□ -0.41
SHROOM3-201ENST00000296043 ABCC12Q96J65 1359 aa12.49□□□□□ -0.41
SHROOM3-201ENST00000296043 NEMP1O14524 444 aa12.49□□□□□ -0.41
SHROOM3-201ENST00000296043 SNPHO15079 494 aa12.49□□□□□ -0.41
SHROOM3-201ENST00000296043 SLC9A1P19634 815 aa12.49□□□□□ -0.41
SHROOM3-201ENST00000296043 KBTBD12Q3ZCT8 623 aa12.49□□□□□ -0.41
SHROOM3-201ENST00000296043 TBC1D10BQ4KMP7 808 aaPredicted RBP12.49□□□□□ -0.41
SHROOM3-201ENST00000296043 UBASH3BQ8TF42 649 aa12.49□□□□□ -0.41
SHROOM3-201ENST00000296043 RPAP3Q9H6T3 665 aaPredicted RBP12.49□□□□□ -0.41
SHROOM3-201ENST00000296043 UBE2TQ9NPD8 197 aaPredicted RBP12.49□□□□□ -0.41
SHROOM3-201ENST00000296043 DDX25Q9UHL0 483 aaKnown RBP12.49□□□□□ -0.41
SHROOM3-201ENST00000296043 ITGB1BP2Q9UKP3 347 aa12.49□□□□□ -0.41
SHROOM3-201ENST00000296043 ZNF18P17022 549 aa12.49□□□□□ -0.41
SHROOM3-201ENST00000296043 MFAP3P55082 362 aa12.49□□□□□ -0.41
SHROOM3-201ENST00000296043 TBCCQ15814 346 aa12.49□□□□□ -0.41
SHROOM3-201ENST00000296043 BLIDQ8IZY5 108 aa12.49□□□□□ -0.41
SHROOM3-201ENST00000296043 DCUN1D5Q9BTE7 237 aa12.49□□□□□ -0.41
SHROOM3-201ENST00000296043 HERC5Q9UII4 1024 aaKnown RBP12.49□□□□□ -0.41
SHROOM3-201ENST00000296043 GRID2IPA4D2P6 1211 aa12.49□□□□□ -0.41
SHROOM3-201ENST00000296043 RGS5O15539 181 aa12.49□□□□□ -0.41
SHROOM3-201ENST00000296043 ALKBH8Q96BT7 664 aaKnown RBP12.49□□□□□ -0.41
SHROOM3-201ENST00000296043 TRPC7Q9HCX4 862 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms