RNA–Protein interactions for RNA: ENST00000267199.8

VPS33A-201, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS33A, Length 4,586 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-201ENST00000267199 MYCBPAPQ8TBZ2 947 aa12.42□□□□□ -0.42
VPS33A-201ENST00000267199 DYDC2Q96IM9 177 aa12.42□□□□□ -0.42
VPS33A-201ENST00000267199 NUF2Q9BZD4 464 aa12.42□□□□□ -0.42
VPS33A-201ENST00000267199 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.42□□□□□ -0.42
VPS33A-201ENST00000267199 IFT172Q9UG01 1749 aa12.42□□□□□ -0.42
VPS33A-201ENST00000267199 ANKRD26Q9UPS8 1709 aa12.42□□□□□ -0.42
VPS33A-201ENST00000267199 ZNF18P17022 549 aa12.42□□□□□ -0.42
VPS33A-201ENST00000267199 HSPA6P17066 643 aa12.42□□□□□ -0.42
VPS33A-201ENST00000267199 RASA1P20936 1047 aa12.42□□□□□ -0.42
VPS33A-201ENST00000267199 GPSM2P81274 684 aa12.42□□□□□ -0.42
VPS33A-201ENST00000267199 RFX8Q6ZV50 586 aa12.42□□□□□ -0.42
VPS33A-201ENST00000267199 DDX27Q96GQ7 796 aaKnown RBP12.42□□□□□ -0.42
VPS33A-201ENST00000267199 RIOK1Q9BRS2 568 aaKnown RBP12.42□□□□□ -0.42
VPS33A-201ENST00000267199 TMOD4Q9NZQ9 345 aa12.42□□□□□ -0.42
VPS33A-201ENST00000267199 GINS2Q9Y248 185 aa12.42□□□□□ -0.42
VPS33A-201ENST00000267199 SIGLEC1Q9BZZ2 1709 aa12.42□□□□□ -0.42
VPS33A-201ENST00000267199 TCP11X1B4DZS4 312 aa12.42□□□□□ -0.42
VPS33A-201ENST00000267199 MAP3K7O43318 606 aa12.42□□□□□ -0.42
VPS33A-201ENST00000267199 INHBAP08476 426 aa12.42□□□□□ -0.42
VPS33A-201ENST00000267199 PTK2Q05397 1052 aa12.42□□□□□ -0.42
VPS33A-201ENST00000267199 NFIXQ14938 502 aa12.42□□□□□ -0.42
VPS33A-201ENST00000267199 KNOP1Q1ED39 458 aaKnown RBP12.42□□□□□ -0.42
VPS33A-201ENST00000267199 BBOF1Q8ND07 529 aa12.42□□□□□ -0.42
VPS33A-201ENST00000267199 VCX3AQ9NNX9 186 aa12.42□□□□□ -0.42
VPS33A-201ENST00000267199 MAD1L1Q9Y6D9 718 aa12.42□□□□□ -0.42
VPS33A-201ENST00000267199 TCRBV5S4A2TA0A5A2 114 aa12.41□□□□□ -0.42
VPS33A-201ENST00000267199 AOC3Q16853 763 aa12.41□□□□□ -0.42
VPS33A-201ENST00000267199 EARS2Q5JPH6 523 aaKnown RBP12.41□□□□□ -0.42
VPS33A-201ENST00000267199 CYB5D1Q6P9G0 228 aa12.41□□□□□ -0.42
VPS33A-201ENST00000267199 ADGRA1Q86SQ6 560 aa12.41□□□□□ -0.42
VPS33A-201ENST00000267199 ZNF354CQ86Y25 554 aa12.41□□□□□ -0.42
VPS33A-201ENST00000267199 MCF2L2Q86YR7 1114 aa12.41□□□□□ -0.42
VPS33A-201ENST00000267199 NIM1KQ8IY84 436 aa12.41□□□□□ -0.42
VPS33A-201ENST00000267199 RPUSD2Q8IZ73 545 aaKnown RBP12.41□□□□□ -0.42
VPS33A-201ENST00000267199 HOOK2Q96ED9 719 aa12.41□□□□□ -0.42
VPS33A-201ENST00000267199 ACCSQ96QU6 501 aa12.41□□□□□ -0.42
VPS33A-201ENST00000267199 TGS1Q96RS0 853 aaKnown RBP12.41□□□□□ -0.42
VPS33A-201ENST00000267199 CELF4Q9BZC1 486 aaKnown RBP12.41□□□□□ -0.42
VPS33A-201ENST00000267199 FAF1Q9UNN5 650 aaPredicted RBP12.41□□□□□ -0.42
VPS33A-201ENST00000267199 GRID2IPA4D2P6 1211 aa12.41□□□□□ -0.42
VPS33A-201ENST00000267199 GOLGA8IPA6NC78 632 aa12.41□□□□□ -0.42
VPS33A-201ENST00000267199 GOLGA8JA6NMD2 632 aa12.41□□□□□ -0.42
VPS33A-201ENST00000267199 NOP56O00567 594 aaKnown RBP12.41□□□□□ -0.42
VPS33A-201ENST00000267199 TMEM179Q6ZVK1 233 aa12.41□□□□□ -0.42
VPS33A-201ENST00000267199 MAML1Q92585 1016 aa12.41□□□□□ -0.42
VPS33A-201ENST00000267199 HAUS1Q96CS2 278 aa12.41□□□□□ -0.42
VPS33A-201ENST00000267199 SGSM3Q96HU1 749 aa12.41□□□□□ -0.42
VPS33A-201ENST00000267199 MXD3Q9BW11 206 aa12.41□□□□□ -0.42
VPS33A-201ENST00000267199 EDEM3Q9BZQ6 932 aa12.41□□□□□ -0.42
VPS33A-201ENST00000267199 GEMIN8Q9NWZ8 242 aaKnown RBP12.41□□□□□ -0.42
VPS33A-201ENST00000267199 LRRIQ4A6NIV6 560 aa12.41□□□□□ -0.42
VPS33A-201ENST00000267199 PDIA5Q14554 519 aa12.41□□□□□ -0.42
VPS33A-201ENST00000267199 NAALADL2Q58DX5 795 aa12.41□□□□□ -0.42
VPS33A-201ENST00000267199 NUDCD1Q96RS6 583 aa12.41□□□□□ -0.42
VPS33A-201ENST00000267199 TRPA1O75762 1119 aa12.4□□□□□ -0.42
VPS33A-201ENST00000267199 KLRC1P26715 233 aa12.4□□□□□ -0.42
VPS33A-201ENST00000267199 HDAC7Q8WUI4 952 aa12.4□□□□□ -0.42
VPS33A-201ENST00000267199 LRRC37BQ96QE4 947 aa12.4□□□□□ -0.42
VPS33A-201ENST00000267199 XPO6Q96QU8 1125 aaKnown RBP12.4□□□□□ -0.42
VPS33A-201ENST00000267199 STK32BQ9NY57 414 aa12.4□□□□□ -0.42
VPS33A-201ENST00000267199 MTMR4Q9NYA4 1195 aa12.4□□□□□ -0.42
VPS33A-201ENST00000267199 BCS1LQ9Y276 419 aa12.4□□□□□ -0.42
VPS33A-201ENST00000267199 PDS5AQ29RF7 1337 aaKnown RBP12.4□□□□□ -0.42
VPS33A-201ENST00000267199 GYG2O15488 501 aa12.4□□□□□ -0.42
VPS33A-201ENST00000267199 CRKP46108 304 aa12.4□□□□□ -0.42
VPS33A-201ENST00000267199 IRX4P78413 519 aa12.4□□□□□ -0.42
VPS33A-201ENST00000267199 PKN1Q16512 942 aa12.4□□□□□ -0.42
VPS33A-201ENST00000267199 RNF168Q8IYW5 571 aaPredicted RBP12.4□□□□□ -0.42
VPS33A-201ENST00000267199 MMGT1Q8N4V1 131 aa12.4□□□□□ -0.42
VPS33A-201ENST00000267199 CNKSR1Q969H4 720 aa12.4□□□□□ -0.42
VPS33A-201ENST00000267199 DBR1Q9UK59 544 aaKnown RBP12.4□□□□□ -0.42
VPS33A-201ENST00000267199 TTC7AQ9ULT0 858 aaPredicted RBP12.4□□□□□ -0.42
VPS33A-201ENST00000267199 NWD1Q149M9 1564 aa12.4□□□□□ -0.42
VPS33A-201ENST00000267199 NPHP3-ACAD11A0A0J9YXS1 232 aa12.4□□□□□ -0.42
VPS33A-201ENST00000267199 F5H6K3 240 aa12.4□□□□□ -0.42
VPS33A-201ENST00000267199 PODXLO00592 558 aa12.4□□□□□ -0.42
VPS33A-201ENST00000267199 NDC80O14777 642 aa12.4□□□□□ -0.42
VPS33A-201ENST00000267199 KLRC3Q07444 240 aa12.4□□□□□ -0.42
VPS33A-201ENST00000267199 BBS9Q3SYG4 887 aa12.4□□□□□ -0.42
VPS33A-201ENST00000267199 LARP7Q4G0J3 582 aaKnown RBP eCLIP12.4□□□□□ -0.42
VPS33A-201ENST00000267199 SCYL2Q6P3W7 929 aa12.4□□□□□ -0.42
VPS33A-201ENST00000267199 TMEM206Q9H813 350 aa12.4□□□□□ -0.42
VPS33A-201ENST00000267199 RAB21Q9UL25 225 aa12.4□□□□□ -0.42
VPS33A-201ENST00000267199 ZSCAN5CA6NGD5 496 aaPredicted RBP12.4□□□□□ -0.43
VPS33A-201ENST00000267199 SKAP2O75563 359 aaPredicted RBP12.4□□□□□ -0.43
VPS33A-201ENST00000267199 RWDD2BP57060 319 aa12.4□□□□□ -0.43
VPS33A-201ENST00000267199 PPP2R5CQ13362 524 aa12.4□□□□□ -0.43
VPS33A-201ENST00000267199 CCDC14Q49A88 953 aa12.4□□□□□ -0.43
VPS33A-201ENST00000267199 CDKAL1Q5VV42 579 aa12.4□□□□□ -0.43
VPS33A-201ENST00000267199 NXNQ6DKJ4 435 aa12.4□□□□□ -0.43
VPS33A-201ENST00000267199 PPP1R18Q6NYC8 613 aa12.4□□□□□ -0.43
VPS33A-201ENST00000267199 MIGA2Q7L4E1 593 aa12.4□□□□□ -0.43
VPS33A-201ENST00000267199 NSMCE1Q8WV22 266 aa12.4□□□□□ -0.43
VPS33A-201ENST00000267199 GLG1Q92896 1179 aa12.4□□□□□ -0.43
VPS33A-201ENST00000267199 SAYSD1Q9NPB0 183 aa12.4□□□□□ -0.43
VPS33A-201ENST00000267199 ANKFY1Q9P2R3 1169 aa12.4□□□□□ -0.43
VPS33A-201ENST00000267199 FLT1P17948 1338 aa12.39□□□□□ -0.43
VPS33A-201ENST00000267199 CFAP73A6NFT4 308 aa12.39□□□□□ -0.43
VPS33A-201ENST00000267199 SPAG7O75391 227 aa12.39□□□□□ -0.43
VPS33A-201ENST00000267199 ACTN1P12814 892 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms