RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 FBXO16Q8IX29 292 aaPredicted RBP12.62□□□□□ -0.39
VPS4A-201ENST00000254950 UBE4BO95155 1302 aa12.62□□□□□ -0.39
VPS4A-201ENST00000254950 HBP1O60381 514 aa12.61□□□□□ -0.39
VPS4A-201ENST00000254950 PSMD10O75832 226 aa12.61□□□□□ -0.39
VPS4A-201ENST00000254950 SLITRK3O94933 977 aa12.61□□□□□ -0.39
VPS4A-201ENST00000254950 MCM3P25205 808 aa12.61□□□□□ -0.39
VPS4A-201ENST00000254950 NOVP48745 357 aa12.61□□□□□ -0.39
VPS4A-201ENST00000254950 PSMC6P62333 389 aa12.61□□□□□ -0.39
VPS4A-201ENST00000254950 ARID5BQ14865 1188 aa12.61□□□□□ -0.39
VPS4A-201ENST00000254950 METTL7BQ6UX53 244 aa12.61□□□□□ -0.39
VPS4A-201ENST00000254950 C17orf75Q9HAS0 396 aa12.61□□□□□ -0.39
VPS4A-201ENST00000254950 ZNF112Q9UJU3 913 aa12.61□□□□□ -0.39
VPS4A-201ENST00000254950 TMEM110-MUSTN1A8MSY1 372 aa12.61□□□□□ -0.39
VPS4A-201ENST00000254950 MAGEB2O15479 319 aa12.61□□□□□ -0.39
VPS4A-201ENST00000254950 RGS2P41220 211 aa12.61□□□□□ -0.39
VPS4A-201ENST00000254950 CLK2P49760 499 aaKnown RBP12.61□□□□□ -0.39
VPS4A-201ENST00000254950 TFAMQ00059 246 aaKnown RBP12.61□□□□□ -0.39
VPS4A-201ENST00000254950 CCDC144BQ3MJ40 725 aa12.61□□□□□ -0.39
VPS4A-201ENST00000254950 LIN9Q5TKA1 542 aa12.61□□□□□ -0.39
VPS4A-201ENST00000254950 IL31RAQ8NI17 732 aa12.61□□□□□ -0.39
VPS4A-201ENST00000254950 ETNPPLQ8TBG4 499 aa12.61□□□□□ -0.39
VPS4A-201ENST00000254950 ZBED3Q96IU2 234 aaPredicted RBP12.61□□□□□ -0.39
VPS4A-201ENST00000254950 ANKRD36BP1Q96IX9 119 aa12.61□□□□□ -0.39
VPS4A-201ENST00000254950 MRPL4Q9BYD3 311 aaKnown RBP12.61□□□□□ -0.39
VPS4A-201ENST00000254950 RSPH10B2B2RC85 870 aa12.61□□□□□ -0.39
VPS4A-201ENST00000254950 RSPH10BP0C881 870 aa12.61□□□□□ -0.39
VPS4A-201ENST00000254950 ITGB5P18084 799 aa12.61□□□□□ -0.39
VPS4A-201ENST00000254950 INHBEP58166 350 aa12.61□□□□□ -0.39
VPS4A-201ENST00000254950 ETF1P62495 437 aaKnown RBP12.61□□□□□ -0.39
VPS4A-201ENST00000254950 MXD4Q14582 209 aaPredicted RBP12.61□□□□□ -0.39
VPS4A-201ENST00000254950 RNF149Q8NC42 400 aa12.61□□□□□ -0.39
VPS4A-201ENST00000254950 XPOTO43592 962 aaKnown RBP12.6□□□□□ -0.39
VPS4A-201ENST00000254950 H2AFZP0C0S5 128 aa12.6□□□□□ -0.39
VPS4A-201ENST00000254950 PPFIA1Q13136 1202 aa12.6□□□□□ -0.39
VPS4A-201ENST00000254950 ZC2HC1CQ53FD0 456 aaPredicted RBP12.6□□□□□ -0.39
VPS4A-201ENST00000254950 H2AFVQ71UI9 128 aa12.6□□□□□ -0.39
VPS4A-201ENST00000254950 THNSL1Q8IYQ7 743 aa12.6□□□□□ -0.39
VPS4A-201ENST00000254950 CYP26B1Q9NR63 512 aa12.6□□□□□ -0.39
VPS4A-201ENST00000254950 LAMB2P55268 1798 aa12.6□□□□□ -0.39
VPS4A-201ENST00000254950 RREB1Q92766 1687 aa12.6□□□□□ -0.39
VPS4A-201ENST00000254950 CASZ1Q86V15 1759 aa12.6□□□□□ -0.39
VPS4A-201ENST00000254950 BPIFB4P59827 614 aa12.6□□□□□ -0.39
VPS4A-201ENST00000254950 KIAA1755Q5JYT7 1200 aa12.6□□□□□ -0.39
VPS4A-201ENST00000254950 KCNK18Q7Z418 384 aa12.6□□□□□ -0.39
VPS4A-201ENST00000254950 RNF169Q8NCN4 708 aa12.6□□□□□ -0.39
VPS4A-201ENST00000254950 FAM213AQ9BRX8 229 aa12.6□□□□□ -0.39
VPS4A-201ENST00000254950 CCDC94Q9BW85 323 aaPredicted RBP12.6□□□□□ -0.39
VPS4A-201ENST00000254950 RPF1Q9H9Y2 349 aaKnown RBP12.6□□□□□ -0.39
VPS4A-201ENST00000254950 CTTNBP2NLQ9P2B4 639 aa12.6□□□□□ -0.39
VPS4A-201ENST00000254950 SUCLA2Q9P2R7 463 aaPredicted RBP12.6□□□□□ -0.39
VPS4A-201ENST00000254950 DBR1Q9UK59 544 aaKnown RBP12.6□□□□□ -0.39
VPS4A-201ENST00000254950 RIPK3Q9Y572 518 aa12.6□□□□□ -0.39
VPS4A-201ENST00000254950 COL24A1Q17RW2 1714 aa12.6□□□□□ -0.39
VPS4A-201ENST00000254950 GOLGA6L10A0A0M3HER8 536 aa12.6□□□□□ -0.39
VPS4A-201ENST00000254950 SLC16A3O15427 465 aaKnown RBP12.6□□□□□ -0.39
VPS4A-201ENST00000254950 GUCY2CP25092 1073 aa12.6□□□□□ -0.39
VPS4A-201ENST00000254950 ADORA2AP29274 412 aa12.6□□□□□ -0.39
VPS4A-201ENST00000254950 VAMP7P51809 220 aa12.6□□□□□ -0.39
VPS4A-201ENST00000254950 FCGRTP55899 365 aa12.6□□□□□ -0.39
VPS4A-201ENST00000254950 OSTNP61366 133 aa12.6□□□□□ -0.39
VPS4A-201ENST00000254950 MDM2Q00987 491 aaPredicted RBP12.6□□□□□ -0.39
VPS4A-201ENST00000254950 TUBB2AQ13885 445 aa12.6□□□□□ -0.39
VPS4A-201ENST00000254950 DLK2Q6UY11 383 aa12.6□□□□□ -0.39
VPS4A-201ENST00000254950 CCDC170Q8IYT3 715 aa12.6□□□□□ -0.39
VPS4A-201ENST00000254950 HVCN1Q96D96 273 aa12.6□□□□□ -0.39
VPS4A-201ENST00000254950 TUBB2BQ9BVA1 445 aa12.6□□□□□ -0.39
VPS4A-201ENST00000254950 ALDH1A1P00352 501 aa12.6□□□□□ -0.39
VPS4A-201ENST00000254950 PDE6CP51160 858 aa12.6□□□□□ -0.39
VPS4A-201ENST00000254950 ZNF568Q3ZCX4 644 aa12.6□□□□□ -0.39
VPS4A-201ENST00000254950 MAP9Q49MG5 647 aa12.6□□□□□ -0.39
VPS4A-201ENST00000254950 IER5Q5VY09 327 aa12.6□□□□□ -0.39
VPS4A-201ENST00000254950 TMCO3Q6UWJ1 677 aa12.6□□□□□ -0.39
VPS4A-201ENST00000254950 APOL6Q9BWW8 343 aa12.6□□□□□ -0.39
VPS4A-201ENST00000254950 GCLMP48507 274 aa12.59□□□□□ -0.39
VPS4A-201ENST00000254950 RARRES1P49788 294 aa12.59□□□□□ -0.39
VPS4A-201ENST00000254950 TNFAIP2Q03169 654 aa12.59□□□□□ -0.39
VPS4A-201ENST00000254950 PTK2Q05397 1052 aa12.59□□□□□ -0.39
VPS4A-201ENST00000254950 CENPPQ6IPU0 288 aa12.59□□□□□ -0.39
VPS4A-201ENST00000254950 TTI2Q6NXR4 508 aa12.59□□□□□ -0.39
VPS4A-201ENST00000254950 C7orf31Q8N865 590 aa12.59□□□□□ -0.39
VPS4A-201ENST00000254950 SAAL1Q96ER3 474 aa12.59□□□□□ -0.39
VPS4A-201ENST00000254950 ZNF668Q96K58 619 aaPredicted RBP12.59□□□□□ -0.39
VPS4A-201ENST00000254950 PURBQ96QR8 312 aaKnown RBP12.59□□□□□ -0.39
VPS4A-201ENST00000254950 CEP72Q9P209 647 aa12.59□□□□□ -0.39
VPS4A-201ENST00000254950 CACNA1SQ13698 1873 aa12.59□□□□□ -0.39
VPS4A-201ENST00000254950 SBF2Q86WG5 1849 aa12.59□□□□□ -0.39
VPS4A-201ENST00000254950 KIAA0391O15091 583 aaKnown RBP12.59□□□□□ -0.39
VPS4A-201ENST00000254950 GAS2O43903 313 aaKnown RBP12.59□□□□□ -0.39
VPS4A-201ENST00000254950 LRRN2O75325 713 aa12.59□□□□□ -0.39
VPS4A-201ENST00000254950 SLC8A3P57103 927 aa12.59□□□□□ -0.39
VPS4A-201ENST00000254950 NR1I3Q14994 352 aa12.59□□□□□ -0.39
VPS4A-201ENST00000254950 RGMBQ6NW40 437 aa12.59□□□□□ -0.39
VPS4A-201ENST00000254950 RAET1EQ8TD07 263 aa12.59□□□□□ -0.39
VPS4A-201ENST00000254950 MAF1Q9H063 256 aa12.59□□□□□ -0.39
VPS4A-201ENST00000254950 UBE2TQ9NPD8 197 aaPredicted RBP12.59□□□□□ -0.39
VPS4A-201ENST00000254950 TAF1LQ8IZX4 1826 aa12.59□□□□□ -0.39
VPS4A-201ENST00000254950 IGSF9BQ9UPX0 1349 aa12.59□□□□□ -0.39
VPS4A-201ENST00000254950 ASAP2O43150 1006 aa12.59□□□□□ -0.39
VPS4A-201ENST00000254950 C6orf222P0C671 652 aaPredicted RBP12.59□□□□□ -0.39
VPS4A-201ENST00000254950 ATF7P17544 494 aaPredicted RBP12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms